TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000018_1.0 # Protein # Selenoprotein N (SelN) # Hs
         (590 letters)

Database: genome.fa 
           4921 sequences; 228,543,505 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

supercont1.159 of Phytophthora infestans                               33   3.0  

>supercont1.159 of Phytophthora infestans
          Length = 200993

 Score = 33.5 bits (75), Expect = 3.0,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 11/77 (14%)
 Frame = -2

Query: 218    GEPWWIIPSELSMFTG-----------YLSNNRFYPPPPKGKEVIIHRLLSMFHPRPFVK 266
              G+ WWI+PS  S+ +            +L ++R   P P     ++ R+L  F      K
Sbjct: 107737 GKSWWILPSRTSLISDPSSFHTGCCSPWLIHHRQLAPVPNNPNHVMERMLEAF------K 107576

Query: 267    TRFAPQGAVACLTAISD 283
              T   P  A+   TA  D
Sbjct: 107575 TNITPAQAMKLFTAPKD 107525