TBLASTN 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|45550694|ref|NP_649556.2| CG1427 CG1427-PA, isoform A [Drosophila (448 letters) Database: genome.fa 2809 sequences; 26,957,458 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Plasmodium_vivax_SaI-1|ctg_6877|2005-09-01|ds-DNA|Plasmodium_viv... 220 3e-62 Plasmodium_vivax_SaI-1|ctg_7202|2005-09-01|ds-DNA|Plasmodium_viv... 31 1.7 Plasmodium_vivax_SaI-1|ctg_7164|2005-09-01|ds-DNA|Plasmodium_viv... 29 5.1 >Plasmodium_vivax_SaI-1|ctg_6877|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR Length = 2031768 Score = 220 bits (560), Expect(2) = 3e-62, Method: Composition-based stats. Identities = 118/315 (37%), Positives = 186/315 (59%), Gaps = 5/315 (1%) Frame = -1 Query: 97 RSGDLLEAQPKAAGSTLLARLTNALILDLIRGIGLPSCAGCFLVPMCTGMTLTLCLQSLR 156 RSG+L + QPK+AG+++LA+ T + + DLI+ G+ C +++P TGM L+ C+ + Sbjct: 145971 RSGNLDDVQPKSAGNSVLAKATTSFVKDLIKSFGIKGCEDVYILPYATGMCLSTCILYTK 145792 Query: 157 KRRPGARYVLWSRIDQKSCFKAITATGLVPVVIPCLIKGESLNTNVDLFREKIKSLGVDS 216 K R + YV+ SRID K+C+K I L +V+ + + E L+TN+ + I++ G + Sbjct: 145791 KEREKSEYVIVSRIDHKTCYKCIDFCALKYLVVDMVYRDEELHTNLSEIEKLIQTYG-EK 145615 Query: 217 ILCLYTTTSCFAPRNSDDIAEVSKLSKQWQIPHLVNNAYGLQAKEIVNQLE-CANRVGRI 275 I C+ + TS +APRNSDDI ++ + +++ IPH++NNA+GLQ + +++ C GR+ Sbjct: 145614 ICCVMSVTSSYAPRNSDDIVKIGHMCRRYNIPHIINNAFGLQCNYLCKEIQKCFETKGRV 145435 Query: 276 DYFVQSSDKNLLVPVGSAIVASFNESVLHDVASTYAGRASGSQSLDVLMTLLSLGRNGFR 335 D+ VQS DKN LVPV IV S ++ + ++ Y GR LD+ +TLL LG+ Sbjct: 145434 DFVVQSCDKNFLVPVNGGIVFSSDKKKMKELKKHYPGRTPVHAYLDLFITLLELGKRKIL 145255 Query: 336 LLFDQRGENFNYLRENLRKFAEPRGEIVIDSRFNSISLAITLATLAG----DQMKSITKL 391 L +R ENF +L+ + +I + N IS+AI L L + +SIT L Sbjct: 145254 NLRKEREENFAWLKNKVSTLCSKYNLSLIKASKNKISMAINLNELYKIYHVENPRSITLL 145075 Query: 392 GSMLHMRGVSGARVI 406 GS+L R V+G RVI Sbjct: 145074 GSLLFYRNVTGHRVI 145030 Score = 37.4 bits (85), Expect(2) = 3e-62, Method: Composition-based stats. Identities = 18/35 (51%), Positives = 21/35 (60%) Frame = -3 Query: 65 NYPHKVGLGEREARIACKLVARRHYNFGHGIGRSG 99 N V +GERE RI LV ++ FGHGIGR G Sbjct: 146173 NSEKNVKIGERENRIYSALVRNKYIGFGHGIGR*G 146069 >Plasmodium_vivax_SaI-1|ctg_7202|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR Length = 2132789 Score = 30.8 bits (68), Expect = 1.7, Method: Composition-based stats. Identities = 14/33 (42%), Positives = 19/33 (57%) Frame = +1 Query: 226 CFAPRNSDDIAEVSKLSKQWQIPHLVNNAYGLQ 258 CFAP A ++L K QIPH+ +N G+Q Sbjct: 393922 CFAPSLGRRQAGAARLQKGLQIPHITDNLRGVQ 394020 >Plasmodium_vivax_SaI-1|ctg_7164|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR Length = 664090 Score = 29.3 bits (64), Expect = 5.1, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 25/67 (37%), Gaps = 2/67 (2%) Frame = -3 Query: 128 GIGLPSCAGCFLVPMCTGMTLTLCLQSLRKRRPGARYVLWSRIDQKSC--FKAITATGLV 185 G G C+GCF C+G + CL + P R W R SC TGL Sbjct: 142916 GFGCSGCSGCFGCSGCSGCSALRCLGCWFRLCP*GRKT-WRRPCSASCLGLSGSARTGLW 142740 Query: 186 PVVIPCL 192 CL Sbjct: 142739 SCYYCCL 142719 Database: genome.fa Posted date: Mar 10, 2008 4:00 PM Number of letters in database: 26,957,458 Number of sequences in database: 2809 Lambda K H 0.320 0.136 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2809 Number of Hits to DB: 14,025,003 Number of extensions: 217635 Number of successful extensions: 1101 Number of sequences better than 10.0: 3 Number of HSP's gapped: 1097 Number of HSP's successfully gapped: 5 Length of query: 448 Length of database: 8,985,819 Length adjustment: 102 Effective length of query: 346 Effective length of database: 8,699,301 Effective search space: 3009958146 Effective search space used: 3009958146 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 46 (22.3 bits) # TBLASTN 2.2.17 [Aug-26-2007] # Query: gi|45550694|ref|NP_649556.2| CG1427 CG1427-PA, isoform A [Drosophila # Database: genome.fa # Fields: Query id, Subject id, % identity, alignment length, mismatches, gap openings, q. start, q. end, s. start, s. end, e-value, bit score gi|45550694|ref|NP_649556.2| Plasmodium_vivax_SaI-1|ctg_6877|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR 37.46 315 192 3 97 406 145971 145030 3e-62 220 gi|45550694|ref|NP_649556.2| Plasmodium_vivax_SaI-1|ctg_6877|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR 51.43 35 17 0 65 99 146173 146069 3e-62 37.4 gi|45550694|ref|NP_649556.2| Plasmodium_vivax_SaI-1|ctg_7202|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR 42.42 33 19 0 226 258 393922 394020 1.7 30.8 gi|45550694|ref|NP_649556.2| Plasmodium_vivax_SaI-1|ctg_7164|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR 31.34 67 44 2 128 192 142916 142719 5.1 29.3