genewise output Score 265.22 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info sbp2 1 MKKEIIVDVKSNPRTHTNGDKDIIREKQKKLKKKNENVKVSINANANAN K ++VD+ + + + K+KKLKK N V AN RKNTLLVDILYGHDFYYS----LSGAKEKKLKKHNIFVCYYGMHAKKAN Plasmodium_viva23525 aaaaccggactgcgtttt caggagaacaacaatgtttgacgaaga gaactttattagaataac tggcaaaataaaatttgaagtacaaca gaccccgccgcccctctc gcagagaggggtcccgcctcgtggggt sbp2 50 VNVENRKNVENRKCIK-N KSIKN + N K KCIK N + I + KKLVNYKKHAILKCIKKN I:G[ggg] ERIPH Plasmodium_viva23660 aatgataacgatataaaaGGGTACAAT Intron 1 CAGGgaacc aattaaaaacttagtaaa <2-----[23716:190776-2> agtca aagcctggcctggccaat ggtcc sbp2 73 IKNAKHIKNIKS--IKYYDDRKKEEKTYQTKNTNNNI-QFGNRLVRITF + + +K ++K E + QT T Q+G+R+V+ITF LGRGNPPEGPMGPPLKSVANKKTEPRMNQTDITKQRYTQIGDRVVKITF Plasmodium_viv190793 tgagaccggcagcctaaggaaaagccaacagaaacatacaggaggaaat tgggaccagctgcctagtcaaacacgtaacatcaagacatgagttatct ggaccgtgaggcctgataacaagacagcaacccaggccacacatggccc sbp2 119 SSDKKKRKELIKKKKMNILMKQKKKKRKEFEEKKKLINKLTNILNVEKE +SDKKKRKE K+K+MN+L+ QK+KK+KEFE+KKK++ K+ +++ E+E TSDKKKRKEYKKRKQMNMLISQKRKKKKEFEKKKKMLRKMNHMIETERE Plasmodium_viv190940 aagaaacagtaaaacaaacaacaaaaaagtgaaaaaccaaacaagagcg cgaaaagaaaaagaatatttgaagaaaaataaaaattgataattacaga gctaaaagataaagagtgctcaagaaaaataagaggccggccgtgggga sbp2 168 KGNYYFLPKCLKKKKISKLKKIIILEKKIKNDIYQELLKQKENINSIND KGN YFLPK ++KK +K K++I+LEK+ K +Y +LL +N + KGNAYFLPKNFRQKKKTKRKRLILLEKEAKQSVYSDLLGGIQNGSFERK Plasmodium_viv191087 agagtttcaatacaaaaacaacaccgaggacagtagccggacagttgaa agacattcaatgaaaacagagttttaaacaagtagattggtaagctaga acccttgcattaaaaacgaggtcgcggacgaccctcagggtatatcgga sbp2 217 HHTGIY-LQLIQNK-RKWILKNKKVKKIIITNNSNNNNNNDNNNNNDNN T + ++ N R+ ++ K ++ N N+ PQTALPPMEGSPNGGREGYIRFVARKARWRAMGPTDSANCGWGQANEEG Plasmodium_viv191234 ccagcccaggtcaggaggtaatggcagatagagcagtgatgtgcgaggg cacctcctagccagggagatgttcgacgggctgccaccaggggacaaag cagagcaggaaactcaatcagtctaacgggtgacccgtctggcagtgga sbp2 264 NNDNNNNNNNNIKFASNFLKKLAKTENVLNGELPDVQVKNLKKFIHTWA ++ ++++ A T + +V +K+F+ W ETRRDSTEGHHLEGAP--------TGTTGDAAQIGEEVARVKRFLLLWG Plasmodium_viv191381 gaacgtaggcctgggc agaaggggcagggggcgaatccctg acggaccagaatagcc cgccgaccatgaatcgtagttttgg ggaccagggccgaaca tcagtcacaacaacccgagctcggc sbp2 313 NKYATG--LRKGK-KYGRKRDIRQLINVAKKIEKYSDQNDNLHLKDKRV K+ G LR G + RK +R AK++ +D+ GKFPRGGVLRSGSAEWTRKGAVRP---PAKEVHSQTDE----------- Plasmodium_viv191504 gatcagggcaagtggtacagggac cgaggctcagg gatcgggttgggccagcgagctgc ccaatacacaa ggcaaggggatgccaggggcaggc ccggaccggca sbp2 359 SSKNNICSVENFDKNNVVNVKEKKKKNSDTIERNEHNICNHNNNNNNNN +NV ++D +R -----------------INVSTHSADHADQADRGR-------------- Plasmodium_viv191609 aagtactggcggcggcga tatccaccaacaacaggg acgctcctcctcgtccag sbp2 408 NNNNNHNNNNNNNNNHNNNNNNNNGDNKNNNIIDVNHILKDEMLKNEKI GD + +I K+ +L++E I ------------------------GDPPSRELI------KERILQSETI Plasmodium_viv191663 ggccaagca agcaccagaa gaccggatt aagttagact accccgaaa agccgacaat sbp2 457 LNYIQVSRVEKKIYINDYVDHEITVKLNTMVKEFLKKISVSHEKLLLLK ++YIQ +RVEKK +IN+YVD IT +LN MVK FL K+S S EKL L++ MSYIQTTRVEKKTFINEYVDQVITEELNGMVKSFLGKLSKSQEKLHLMR Plasmodium_viv191720 aatacaaaggaaataagtggcgaaggcagagatttgactatcgacctaa tgataccgtaaacttaaataattcaatagttacttgatcacaaatattg gccaaccggaaagcacgcctggtaagactgcaatagataatgggctggg sbp2 506 -KKKRYFLGLKECYKHICIDEPKIVFIAPNIEPSLNNIFDDTLGKIIAK KKKRY+LGL+E Y+HICID+PK+V++APNIEP N +FD+ + KII K TKKKRYYLGLRESYRHICIDDPKLVLLAPNIEPMTNGVFDEQVHKIICK Plasmodium_viv191867 aaaaatttgccgatacataggcatgccgcaagcaaaggtggcgcaaata caaagaatgtgagagatgtaacattttccatactcagttaaataattga gggagccgtcggccacttttccggttgggctggggcggccgggtactcg sbp2 554 CKEKNIPIVFALSKNLLGKCINKSRQSIICIIDNDSYIKECNDIINLAN C+EK IP+V+ALSKNLLGKCINKSRQS+IC++DNDS+I+EC+ I+ LA+ CREKGIPLVYALSKNLLGKCINKSRQSVICVVDNDSFIRECDAIVRLAS Plasmodium_viv192014 tcgagactgtgtaaatcgataaatacagatgggagttacgtggagccga ggaagtcttactgaattgagtaacgagttgttaaacttgagacttgtcg cgggcacgctcacgtgccgctcgaggcgccggctcccaggccgtggggt sbp2 603 SLKLCK SL+ + SLRGMQ Plasmodium_viv192161 tccgac ctggta gcgcga // Gene 1 Gene 23525 192178 Exon 23525 23715 phase 0 Exon 190777 192178 phase 2 // >Plasmodium_vivax_TIGR.[23525:192178].sp.tr RKNTLLVDILYGHDFYYSLSGAKEKKLKKHNIFVCYYGMHAKKANKKLVNYKKHAILKCI KKNGERIPHLGRGNPPEGPMGPPLKSVANKKTEPRMNQTDITKQRYTQIGDRVVKITFTS DKKKRKEYKKRKQMNMLISQKRKKKKEFEKKKKMLRKMNHMIETEREKGNAYFLPKNFRQ KKKTKRKRLILLEKEAKQSVYSDLLGGIQNGSFERKPQTALPPMEGSPNGGREGYIRFVA RKARWRAMGPTDSANCGWGQANEEGETRRDSTEGHHLEGAPTGTTGDAAQIGEEVARVKR FLLLWGGKFPRGGVLRSGSAEWTRKGAVRPPAKEVHSQTDEINVSTHSADHADQADRGRG DPPSRELIKERILQSETIMSYIQTTRVEKKTFINEYVDQVITEELNGMVKSFLGKLSKSQ EKLHLMRTKKKRYYLGLRESYRHICIDDPKLVLLAPNIEPMTNGVFDEQVHKIICKCREK GIPLVYALSKNLLGKCINKSRQSVICVVDNDSFIRECDAIVRLASSLRGMQ // >Plasmodium_vivax_TIGR.[23525:192178].sp AGGAAAAACACCCTCCTCGTGGACATCCTGTACGGCCACGACTTTTACTATTCCCTGAGC GGAGCGAAAGAGAAAAAGCTGAAGAAGCATAACATCTTCGTGTGCTACTATGGCATGCAT GCGAAGAAGGCGAATAAAAAATTGGTCAACTATAAGAAGCACGCCATTTTGAAGTGCATC AAAAAAAATGGGGAGAGGATTCCCCACTTGGGGAGAGGCAACCCGCCTGAGGGACCGATG GGCCCCCCTTTGAAAAGTGTAGCAAACAAAAAAACGGAACCCCGAATGAACCAAACAGAC ATCACCAAACAGAGGTACACCCAAATCGGAGACAGAGTTGTGAAGATCACCTTCACGAGC GATAAAAAAAAACGAAAGGAATATAAAAAAAGAAAGCAAATGAATATGCTCATTAGCCAA AAAAGGAAAAAAAAAAAAGAATTTGAAAAAAAGAAAAAGATGCTCCGCAAGATGAACCAC ATGATTGAGACGGAGCGGGAAAAAGGCAACGCCTATTTTTTGCCCAAAAATTTTAGACAA AAAAAAAAAACCAAGCGAAAGAGGCTTATCCTGCTCGAGAAGGAAGCCAAGCAAAGCGTC TACAGTGACCTACTGGGGGGGATTCAAAATGGATCTTTCGAGAGGAAACCCCAAACGGCA CTGCCCCCAATGGAGGGATCACCAAACGGTGGCAGAGAAGGTTACATAAGGTTTGTCGCT CGAAAAGCCAGGTGGAGGGCTATGGGACCCACCGACTCGGCTAACTGTGGGTGGGGCCAA GCGAATGAGGAGGGAGAGACGAGACGCGACTCAACGGAGGGGCACCACTTGGAAGGAGCC CCAACTGGCACAACGGGTGACGCAGCCCAAATAGGCGAAGAAGTCGCCCGCGTGAAAAGG TTCCTTCTCCTGTGGGGCGGGAAGTTCCCAAGAGGGGGGGTGCTGAGAAGTGGGTCCGCC GAATGGACGCGGAAGGGCGCAGTGAGGCCCCCCGCCAAGGAGGTACACTCCCAGACGGAC GAAATAAACGTGTCCACTCACTCCGCTGACCACGCTGACCAGGCTGACCGCGGAAGGGGA GACCCCCCCAGCAGGGAACTAATAAAAGAGCGCATCCTGCAAAGCGAAACAATTATGAGC TACATACAAACCACCAGGGTGGAAAAAAAAACGTTCATAAACGAGTACGTCGATCAGGTG ATTACAGAAGAGCTAAACGGTATGGTCAAATCATTTTTAGGGAAACTTTCAAAATCTCAG GAGAAGCTCCATTTGATGAGGACGAAGAAGAAAAGGTACTACTTGGGTCTCCGGGAGAGC TACAGACACATTTGTATTGATGACCCCAAGTTGGTTCTTCTGGCGCCGAACATTGAGCCG ATGACGAACGGGGTGTTCGACGAGCAGGTGCATAAAATCATTTGCAAGTGCCGGGAGAAG GGCATACCCTTGGTCTATGCCTTAAGCAAGAATTTGCTCGGCAAGTGCATTAACAAGTCA AGGCAGAGCGTGATCTGCGTGGTGGACAATGACTCCTTCATACGGGAGTGCGACGCGATT GTGCGGCTGGCGAGTTCGCTCCGGGGCATGCAA //