BLASTN 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Plasmodium_falciparum_3D7|MAL14|MAL14_tRNA.SelCys1|Annotation|e (105 letters) Database: genome.fa 2809 sequences; 26,957,458 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Plasmodium_vivax_SaI-1|ctg_7179|2005-09-01|ds-DNA|Plasmodium_viv... 141 7e-34 Plasmodium_vivax_SaI-1|ctg_7202|2005-09-01|ds-DNA|Plasmodium_viv... 38 0.008 Plasmodium_vivax_SaI-1|ctg_7052|2005-09-01|ds-DNA|Plasmodium_viv... 30 1.9 Plasmodium_vivax_SaI-1|ctg_7169|2005-09-01|ds-DNA|Plasmodium_viv... 30 1.9 Plasmodium_vivax_SaI-1|ctg_6877|2005-09-01|ds-DNA|Plasmodium_viv... 30 1.9 Plasmodium_vivax_SaI-1|ctg_6491|2005-09-01|ds-DNA|Plasmodium_viv... 28 7.5 Plasmodium_vivax_SaI-1|ctg_6569|2005-09-01|ds-DNA|Plasmodium_viv... 28 7.5 Plasmodium_vivax_SaI-1|ctg_6950|2005-09-01|ds-DNA|Plasmodium_viv... 28 7.5 Plasmodium_vivax_SaI-1|ctg_6977|2005-09-01|ds-DNA|Plasmodium_viv... 28 7.5 Plasmodium_vivax_SaI-1|ctg_7027|2005-09-01|ds-DNA|Plasmodium_viv... 28 7.5 Plasmodium_vivax_SaI-1|ctg_6840|2005-09-01|ds-DNA|Plasmodium_viv... 28 7.5 Plasmodium_vivax_SaI-1|ctg_6843|2005-09-01|ds-DNA|Plasmodium_viv... 28 7.5 Plasmodium_vivax_SaI-1|ctg_6871|2005-09-01|ds-DNA|Plasmodium_viv... 28 7.5 >Plasmodium_vivax_SaI-1|ctg_7179|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR Length = 1986252 Score = 141 bits (71), Expect = 7e-34 Identities = 86/91 (94%) Strand = Plus / Plus Query: 4 tgcaccgatgagttagcatggttgctaagtatgacttcaaatcatttggcgtagtttttc 63 |||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||| Sbjct: 1835015 tgcaccgatgagttagcatggttgttaagtatgacttcaaatcataaggcgtagaatttc 1835074 Query: 64 tgcgcagaggttcgattcctccttcggtgcg 94 ||||||||||||||||||||||||||||||| Sbjct: 1835075 tgcgcagaggttcgattcctccttcggtgcg 1835105 Score = 30.2 bits (15), Expect = 1.9 Identities = 15/15 (100%) Strand = Plus / Plus Query: 79 ttcctccttcggtgc 93 ||||||||||||||| Sbjct: 838005 ttcctccttcggtgc 838019 Score = 28.2 bits (14), Expect = 7.5 Identities = 14/14 (100%) Strand = Plus / Minus Query: 79 ttcctccttcggtg 92 |||||||||||||| Sbjct: 120831 ttcctccttcggtg 120818 Score = 28.2 bits (14), Expect = 7.5 Identities = 14/14 (100%) Strand = Plus / Minus Query: 79 ttcctccttcggtg 92 |||||||||||||| Sbjct: 1864426 ttcctccttcggtg 1864413 >Plasmodium_vivax_SaI-1|ctg_7202|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR Length = 2132789 Score = 38.2 bits (19), Expect = 0.008 Identities = 19/19 (100%) Strand = Plus / Plus Query: 45 tcatttggcgtagtttttc 63 ||||||||||||||||||| Sbjct: 1615172 tcatttggcgtagtttttc 1615190 Score = 30.2 bits (15), Expect = 1.9 Identities = 15/15 (100%) Strand = Plus / Minus Query: 52 gcgtagtttttctgc 66 ||||||||||||||| Sbjct: 1057215 gcgtagtttttctgc 1057201 Score = 30.2 bits (15), Expect = 1.9 Identities = 15/15 (100%) Strand = Plus / Plus Query: 62 tctgcgcagaggttc 76 ||||||||||||||| Sbjct: 1831561 tctgcgcagaggttc 1831575 Score = 28.2 bits (14), Expect = 7.5 Identities = 14/14 (100%) Strand = Plus / Plus Query: 38 cttcaaatcatttg 51 |||||||||||||| Sbjct: 1514694 cttcaaatcatttg 1514707 Score = 28.2 bits (14), Expect = 7.5 Identities = 14/14 (100%) Strand = Plus / Plus Query: 80 tcctccttcggtgc 93 |||||||||||||| Sbjct: 2026392 tcctccttcggtgc 2026405 >Plasmodium_vivax_SaI-1|ctg_7052|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR Length = 1198945 Score = 30.2 bits (15), Expect = 1.9 Identities = 15/15 (100%) Strand = Plus / Plus Query: 75 tcgattcctccttcg 89 ||||||||||||||| Sbjct: 648836 tcgattcctccttcg 648850 >Plasmodium_vivax_SaI-1|ctg_7169|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR Length = 2021996 Score = 30.2 bits (15), Expect = 1.9 Identities = 15/15 (100%) Strand = Plus / Plus Query: 75 tcgattcctccttcg 89 ||||||||||||||| Sbjct: 560814 tcgattcctccttcg 560828 Score = 28.2 bits (14), Expect = 7.5 Identities = 14/14 (100%) Strand = Plus / Plus Query: 53 cgtagtttttctgc 66 |||||||||||||| Sbjct: 492792 cgtagtttttctgc 492805 >Plasmodium_vivax_SaI-1|ctg_6877|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR Length = 2031768 Score = 30.2 bits (15), Expect = 1.9 Identities = 15/15 (100%) Strand = Plus / Minus Query: 78 attcctccttcggtg 92 ||||||||||||||| Sbjct: 190936 attcctccttcggtg 190922 Score = 30.2 bits (15), Expect = 1.9 Identities = 15/15 (100%) Strand = Plus / Plus Query: 79 ttcctccttcggtgc 93 ||||||||||||||| Sbjct: 1174299 ttcctccttcggtgc 1174313 Score = 28.2 bits (14), Expect = 7.5 Identities = 14/14 (100%) Strand = Plus / Plus Query: 42 aaatcatttggcgt 55 |||||||||||||| Sbjct: 1632263 aaatcatttggcgt 1632276 >Plasmodium_vivax_SaI-1|ctg_6491|2005-09-01|ds- DNA|Plasmodium_vivax_TIGR Length = 751 Score = 28.2 bits (14), Expect = 7.5 Identities = 14/14 (100%) Strand = Plus / Minus Query: 38 cttcaaatcatttg 51 |||||||||||||| Sbjct: 129 cttcaaatcatttg 116 >Plasmodium_vivax_SaI-1|ctg_6569|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR Length = 533304 Score = 28.2 bits (14), Expect = 7.5 Identities = 14/14 (100%) Strand = Plus / Minus Query: 62 tctgcgcagaggtt 75 |||||||||||||| Sbjct: 72269 tctgcgcagaggtt 72256 >Plasmodium_vivax_SaI-1|ctg_6950|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR Length = 1370936 Score = 28.2 bits (14), Expect = 7.5 Identities = 14/14 (100%) Strand = Plus / Plus Query: 39 ttcaaatcatttgg 52 |||||||||||||| Sbjct: 285408 ttcaaatcatttgg 285421 >Plasmodium_vivax_SaI-1|ctg_6977|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR Length = 1923364 Score = 28.2 bits (14), Expect = 7.5 Identities = 17/18 (94%) Strand = Plus / Minus Query: 45 tcatttggcgtagttttt 62 |||||||||||| ||||| Sbjct: 431211 tcatttggcgtatttttt 431194 Score = 28.2 bits (14), Expect = 7.5 Identities = 14/14 (100%) Strand = Plus / Minus Query: 50 tggcgtagtttttc 63 |||||||||||||| Sbjct: 875377 tggcgtagtttttc 875364 >Plasmodium_vivax_SaI-1|ctg_7027|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR Length = 521442 Score = 28.2 bits (14), Expect = 7.5 Identities = 14/14 (100%) Strand = Plus / Minus Query: 46 catttggcgtagtt 59 |||||||||||||| Sbjct: 263868 catttggcgtagtt 263855 Score = 28.2 bits (14), Expect = 7.5 Identities = 14/14 (100%) Strand = Plus / Minus Query: 8 ccgatgagttagca 21 |||||||||||||| Sbjct: 447532 ccgatgagttagca 447519 >Plasmodium_vivax_SaI-1|ctg_6840|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR Length = 895497 Score = 28.2 bits (14), Expect = 7.5 Identities = 14/14 (100%) Strand = Plus / Plus Query: 37 acttcaaatcattt 50 |||||||||||||| Sbjct: 415632 acttcaaatcattt 415645 >Plasmodium_vivax_SaI-1|ctg_6843|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR Length = 589976 Score = 28.2 bits (14), Expect = 7.5 Identities = 14/14 (100%) Strand = Plus / Minus Query: 74 ttcgattcctcctt 87 |||||||||||||| Sbjct: 365160 ttcgattcctcctt 365147 >Plasmodium_vivax_SaI-1|ctg_6871|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR Length = 1012632 Score = 28.2 bits (14), Expect = 7.5 Identities = 14/14 (100%) Strand = Plus / Plus Query: 37 acttcaaatcattt 50 |||||||||||||| Sbjct: 1009269 acttcaaatcattt 1009282 Database: genome.fa Posted date: Mar 10, 2008 4:00 PM Number of letters in database: 26,957,458 Number of sequences in database: 2809 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 2809 Number of Hits to DB: 25,420 Number of extensions: 1208 Number of successful extensions: 87 Number of sequences better than 10.0: 13 Number of HSP's gapped: 87 Number of HSP's successfully gapped: 25 Length of query: 105 Length of database: 26,957,458 Length adjustment: 16 Effective length of query: 89 Effective length of database: 26,912,514 Effective search space: 2395213746 Effective search space used: 2395213746 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 13 (26.3 bits) S2: 14 (28.2 bits) # BLASTN 2.2.17 [Aug-26-2007] # Query: Plasmodium_falciparum_3D7|MAL14|MAL14_tRNA.SelCys1|Annotation|e # Database: genome.fa # Fields: Query id, Subject id, % identity, alignment length, mismatches, gap openings, q. start, q. end, s. start, s. end, e-value, bit score Plasmodium_falciparum_3D7|MAL14|MAL14_tRNA.SelCys1|Annotation|e Plasmodium_vivax_SaI-1|ctg_7179|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR 94.51 91 5 0 4 94 1835015 1835105 7e-34 141 Plasmodium_falciparum_3D7|MAL14|MAL14_tRNA.SelCys1|Annotation|e Plasmodium_vivax_SaI-1|ctg_7179|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR 100.00 15 0 0 79 93 838005 838019 1.9 30.2 Plasmodium_falciparum_3D7|MAL14|MAL14_tRNA.SelCys1|Annotation|e Plasmodium_vivax_SaI-1|ctg_7179|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR 100.00 14 0 0 79 92 120831 120818 7.5 28.2 Plasmodium_falciparum_3D7|MAL14|MAL14_tRNA.SelCys1|Annotation|e Plasmodium_vivax_SaI-1|ctg_7179|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR 100.00 14 0 0 79 92 1864426 1864413 7.5 28.2 Plasmodium_falciparum_3D7|MAL14|MAL14_tRNA.SelCys1|Annotation|e Plasmodium_vivax_SaI-1|ctg_7202|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR 100.00 19 0 0 45 63 1615172 1615190 0.008 38.2 Plasmodium_falciparum_3D7|MAL14|MAL14_tRNA.SelCys1|Annotation|e Plasmodium_vivax_SaI-1|ctg_7202|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR 100.00 15 0 0 52 66 1057215 1057201 1.9 30.2 Plasmodium_falciparum_3D7|MAL14|MAL14_tRNA.SelCys1|Annotation|e Plasmodium_vivax_SaI-1|ctg_7202|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR 100.00 15 0 0 62 76 1831561 1831575 1.9 30.2 Plasmodium_falciparum_3D7|MAL14|MAL14_tRNA.SelCys1|Annotation|e Plasmodium_vivax_SaI-1|ctg_7202|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR 100.00 14 0 0 38 51 1514694 1514707 7.5 28.2 Plasmodium_falciparum_3D7|MAL14|MAL14_tRNA.SelCys1|Annotation|e Plasmodium_vivax_SaI-1|ctg_7202|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR 100.00 14 0 0 80 93 2026392 2026405 7.5 28.2 Plasmodium_falciparum_3D7|MAL14|MAL14_tRNA.SelCys1|Annotation|e Plasmodium_vivax_SaI-1|ctg_7052|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR 100.00 15 0 0 75 89 648836 648850 1.9 30.2 Plasmodium_falciparum_3D7|MAL14|MAL14_tRNA.SelCys1|Annotation|e Plasmodium_vivax_SaI-1|ctg_7169|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR 100.00 15 0 0 75 89 560814 560828 1.9 30.2 Plasmodium_falciparum_3D7|MAL14|MAL14_tRNA.SelCys1|Annotation|e Plasmodium_vivax_SaI-1|ctg_7169|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR 100.00 14 0 0 53 66 492792 492805 7.5 28.2 Plasmodium_falciparum_3D7|MAL14|MAL14_tRNA.SelCys1|Annotation|e Plasmodium_vivax_SaI-1|ctg_6877|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR 100.00 15 0 0 78 92 190936 190922 1.9 30.2 Plasmodium_falciparum_3D7|MAL14|MAL14_tRNA.SelCys1|Annotation|e Plasmodium_vivax_SaI-1|ctg_6877|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR 100.00 15 0 0 79 93 1174299 1174313 1.9 30.2 Plasmodium_falciparum_3D7|MAL14|MAL14_tRNA.SelCys1|Annotation|e Plasmodium_vivax_SaI-1|ctg_6877|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR 100.00 14 0 0 42 55 1632263 1632276 7.5 28.2 Plasmodium_falciparum_3D7|MAL14|MAL14_tRNA.SelCys1|Annotation|e Plasmodium_vivax_SaI-1|ctg_6491|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR 100.00 14 0 0 38 51 129 116 7.5 28.2 Plasmodium_falciparum_3D7|MAL14|MAL14_tRNA.SelCys1|Annotation|e Plasmodium_vivax_SaI-1|ctg_6569|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR 100.00 14 0 0 62 75 72269 72256 7.5 28.2 Plasmodium_falciparum_3D7|MAL14|MAL14_tRNA.SelCys1|Annotation|e Plasmodium_vivax_SaI-1|ctg_6950|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR 100.00 14 0 0 39 52 285408 285421 7.5 28.2 Plasmodium_falciparum_3D7|MAL14|MAL14_tRNA.SelCys1|Annotation|e Plasmodium_vivax_SaI-1|ctg_6977|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR 94.44 18 1 0 45 62 431211 431194 7.5 28.2 Plasmodium_falciparum_3D7|MAL14|MAL14_tRNA.SelCys1|Annotation|e Plasmodium_vivax_SaI-1|ctg_6977|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR 100.00 14 0 0 50 63 875377 875364 7.5 28.2 Plasmodium_falciparum_3D7|MAL14|MAL14_tRNA.SelCys1|Annotation|e Plasmodium_vivax_SaI-1|ctg_7027|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR 100.00 14 0 0 46 59 263868 263855 7.5 28.2 Plasmodium_falciparum_3D7|MAL14|MAL14_tRNA.SelCys1|Annotation|e Plasmodium_vivax_SaI-1|ctg_7027|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR 100.00 14 0 0 8 21 447532 447519 7.5 28.2 Plasmodium_falciparum_3D7|MAL14|MAL14_tRNA.SelCys1|Annotation|e Plasmodium_vivax_SaI-1|ctg_6840|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR 100.00 14 0 0 37 50 415632 415645 7.5 28.2 Plasmodium_falciparum_3D7|MAL14|MAL14_tRNA.SelCys1|Annotation|e Plasmodium_vivax_SaI-1|ctg_6843|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR 100.00 14 0 0 74 87 365160 365147 7.5 28.2 Plasmodium_falciparum_3D7|MAL14|MAL14_tRNA.SelCys1|Annotation|e Plasmodium_vivax_SaI-1|ctg_6871|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR 100.00 14 0 0 37 50 1009269 1009282 7.5 28.2