TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 
         (453 letters)

Database: genome 
           697 sequences; 71,881,135 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

scaffold_7                                                            325   7e-89

>scaffold_7
          Length = 741107

 Score =  325 bits (834), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 172/424 (40%), Positives = 272/424 (64%), Gaps = 5/424 (1%)
 Frame = -3

Query: 6      MNFEQVNIPEKLVPDNYLQLGLAAQRSKQRSFKELLEKRKLPKNGWSDERIEELVHMLAS 65
              MN   + +  +++ D Y+++   +  +K++ FK LL  R+LP+ G+ D  IE L+++ A+
Sbjct: 284145 MN**NLKLCSEIIDDKYVKIASNSLNAKEKLFKLLLS*RQLPEEGFDDLTIEYLLNIFAT 283966

Query: 66     LDSNNYPHKVGLGEREARIACKLVARRHYNFGHGIGRSGDLLEAQPKAAGSTLLARLTNA 125
              +D+NN+ +KVG+GERE+RI   LV +R+Y  GHGIGRSGDL+ +QPKAAGS+L+A+LT  
Sbjct: 283965 MDTNNFSNKVGVGERESRIFSALV*KRNYYMGHGIGRSGDLIASQPKAAGSSLIAKLTKH 283786

Query: 126    LILDLIRGIGLPSCAGCFLVPMCTGMTLTLCLQSLRKRRPGARYVLWSRIDQKSCFKAIT 185
              L  D ++ +         LVP+ TGM ++LCL +L+  +P A+YVLW RID K+C K I 
Sbjct: 283785 LAKDALK-LSNYQINELLLVPVATGMAISLCLLALKSLKP*AKYVLWPRID*KTCLKCI* 283609

Query: 186    ATGLVPVVIPCLIKGESLNTNVDLFREKIKSLGVDSILCLYTTTSCFAPRNSDDIAEVSK 245
                 L+P+VI  +I+   + TN+D+   K+  +G D+I+C+ +TTSCFAPR  D+I E++K
Sbjct: 283608 TANLIPIVIDSVIQDHVVTTNLDMLI*KVNEIGPDNIVCVLSTTSCFAPRIPDNIGEIAK 283429

Query: 246    LSKQWQIPHLVNNAYGLQAKEIVNQLECANRVGRIDYFVQSSDKNLLVPVGSAIVASFNE 305
              + K + I H+VNNAYGL   +I N +      G ++  V S+DKN +VPVG A++   ++
Sbjct: 283428 ICK*FSIYHVVNNAYGL*CNKIANSINLGLA*GTVNLIVSSTDKNFMVPVGGALIYGNDK 283249

Query: 306    SVLHDVASTYAGRASGSQSLDVLMTLLSLGRNGFRLLFDQRGENFNYLRENLRKFAEPRG 365
               ++  ++  Y GRAS +  LD+ +T LS+G++G+  L  +R EN+ Y +E L        
Sbjct: 283248 KLIK*ISELYPGRASAAPILDLFITFLSMGKSGYLQLQKERVENYAYFKEKL*IMT*KIS 283069

Query: 366    EIVIDSRFNSISLAITLATLAGD-----QMKSITKLGSMLHMRGVSGARVIVPGQNKTID 420
              E ++++  NSIS+ I+L  L  D     +   ITKLG++L+ + V G+RVI   +NK + 
Sbjct: 283068 EQILNTPKNSISIGISL*NLKID*NN*EEKN*ITKLGAILYSKKVMGSRVITNKKNKVVC 282889

Query: 421    GHEF 424
              G EF
Sbjct: 282888 GIEF 282877


  Database: genome
    Posted date:  Jan 30, 2008  8:58 PM
  Number of letters in database: 71,881,135
  Number of sequences in database:  697
  
Lambda     K      H
   0.320    0.136    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 697
Number of Hits to DB: 32,236,218
Number of extensions: 425448
Number of successful extensions: 1094
Number of sequences better than  1.0: 1
Number of HSP's gapped: 1092
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 23,960,378
Length adjustment: 109
Effective length of query: 344
Effective length of database: 23,884,405
Effective search space: 8216235320
Effective search space used: 8216235320
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)