BLASTN 2.2.17 [Aug-26-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tRNAsec_predit:[revcomp]
(87 letters)
Database: genoma_PlasmoDB.fa
14 sequences; 23,462,190 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Plasmodium_knowlesi_strain_H|PK4.chr12.pseudo|2007-02-22|ds-DNA|... 172 1e-43
Plasmodium_knowlesi_strain_H|PK4.chr03|2007-02-22|ds-DNA|Plasmod... 30 1.3
Plasmodium_knowlesi_strain_H|PK4.chr06|2007-02-22|ds-DNA|Plasmod... 30 1.3
Plasmodium_knowlesi_strain_H|PK4.chr02|2007-02-22|ds-DNA|Plasmod... 28 5.3
Plasmodium_knowlesi_strain_H|PK4.chr13|2007-02-22|ds-DNA|Plasmod... 28 5.3
Plasmodium_knowlesi_strain_H|PK4.chr11.pseudo.embl|2007-02-22|ds... 28 5.3
Plasmodium_knowlesi_strain_H|PK4.chr05|2007-02-22|ds-DNA|Plasmod... 28 5.3
Plasmodium_knowlesi_strain_H|PK4.chr07|2007-02-22|ds-DNA|Plasmod... 28 5.3
Plasmodium_knowlesi_strain_H|chr14|2007-02-22|ds-DNA|Plasmodium_... 28 5.3
>Plasmodium_knowlesi_strain_H|PK4.chr12.pseudo|2007-02-22|ds-
DNA|Plasmodium_knowlesi_Sanger
Length = 3128370
Score = 172 bits (87), Expect = 1e-43
Identities = 87/87 (100%)
Strand = Plus / Minus
Query: 1 gcaccgaaggaggaatcgaacctctgcgcagaaattctacgccaaatgatttgaagtcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2974907 gcaccgaaggaggaatcgaacctctgcgcagaaattctacgccaaatgatttgaagtcat 2974848
Query: 61 acttagcaaccatgctaactcatcggt 87
|||||||||||||||||||||||||||
Sbjct: 2974847 acttagcaaccatgctaactcatcggt 2974821
Score = 32.2 bits (16), Expect = 0.34
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 5 cgaaggaggaatcgaa 20
||||||||||||||||
Sbjct: 3048333 cgaaggaggaatcgaa 3048318
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 42 ccaaatgatttgaa 55
||||||||||||||
Sbjct: 739127 ccaaatgatttgaa 739114
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 9 ggaggaatcgaacc 22
||||||||||||||
Sbjct: 1876470 ggaggaatcgaacc 1876457
>Plasmodium_knowlesi_strain_H|PK4.chr03|2007-02-22|ds-
DNA|Plasmodium_knowlesi_Sanger
Length = 973297
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1 gcaccgaaggaggaa 15
|||||||||||||||
Sbjct: 817501 gcaccgaaggaggaa 817487
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 41 gccaaatgatttga 54
||||||||||||||
Sbjct: 475275 gccaaatgatttga 475262
>Plasmodium_knowlesi_strain_H|PK4.chr06|2007-02-22|ds-
DNA|Plasmodium_knowlesi_Sanger
Length = 1053092
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 26 gcgcagaaattctac 40
|||||||||||||||
Sbjct: 83199 gcgcagaaattctac 83213
>Plasmodium_knowlesi_strain_H|PK4.chr02|2007-02-22|ds-
DNA|Plasmodium_knowlesi_Sanger
Length = 1770351
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 55 agtcatacttagca 68
||||||||||||||
Sbjct: 873954 agtcatacttagca 873967
>Plasmodium_knowlesi_strain_H|PK4.chr13|2007-02-22|ds-
DNA|Plasmodium_knowlesi_Sanger
Length = 2200295
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 28 gcagaaattctacg 41
||||||||||||||
Sbjct: 1043359 gcagaaattctacg 1043346
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 9 ggaggaatcgaacc 22
||||||||||||||
Sbjct: 1625255 ggaggaatcgaacc 1625268
>Plasmodium_knowlesi_strain_H|PK4.chr11.pseudo.embl|2007-02-22|ds-
DNA|Plasmodium_knowlesi_Sanger
Length = 2372884
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 7 aaggaggaatcgaa 20
||||||||||||||
Sbjct: 2244276 aaggaggaatcgaa 2244289
>Plasmodium_knowlesi_strain_H|PK4.chr05|2007-02-22|ds-
DNA|Plasmodium_knowlesi_Sanger
Length = 1324984
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 9 ggaggaatcgaacc 22
||||||||||||||
Sbjct: 570008 ggaggaatcgaacc 569995
>Plasmodium_knowlesi_strain_H|PK4.chr07|2007-02-22|ds-
DNA|Plasmodium_knowlesi_Sanger
Length = 1496036
Score = 28.2 bits (14), Expect = 5.3
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 2 caccgaaggaggaatcga 19
|||| |||||||||||||
Sbjct: 467139 cacccaaggaggaatcga 467122
>Plasmodium_knowlesi_strain_H|chr14|2007-02-22|ds-
DNA|Plasmodium_knowlesi_Sanger
Length = 3159096
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 52 tgaagtcatactta 65
||||||||||||||
Sbjct: 445386 tgaagtcatactta 445399
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 9 ggaggaatcgaacc 22
||||||||||||||
Sbjct: 455666 ggaggaatcgaacc 455653
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 3 accgaaggaggaat 16
||||||||||||||
Sbjct: 2300148 accgaaggaggaat 2300161
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 42 ccaaatgatttgaa 55
||||||||||||||
Sbjct: 3026498 ccaaatgatttgaa 3026485
Database: genoma_PlasmoDB.fa
Posted date: Mar 6, 2008 2:35 PM
Number of letters in database: 23,462,190
Number of sequences in database: 14
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 14
Number of Hits to DB: 18,765
Number of extensions: 895
Number of successful extensions: 17
Number of sequences better than 10.0: 9
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 17
Length of query: 87
Length of database: 23,462,190
Length adjustment: 15
Effective length of query: 72
Effective length of database: 23,461,980
Effective search space: 1689262560
Effective search space used: 1689262560
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
S2: 14 (28.2 bits)
