# BLASTN 2.2.17 [Aug-26-2007]
# Query: Plasmodium_falciparum_3D7|MAL14|MAL14_tRNA.SelCys1|Annotation|Plasmodium_falciparum_Sanger_Stanford_TIGR|(processed_transcript)tRNA Selenocysteine tRNA, putative
# Database: genoma_PlasmoDB.fa
# Fields: Query id, Subject id, % identity, alignment length, mismatches, gap openings, q. start, q. end, s. start, s. end, e-value, bit score
Plasmodium_falciparum_3D7|MAL14|MAL14_tRNA.SelCys1|Annotation|Plasmodium_falciparum_Sanger_Stanford_TIGR|(processed_transcript)tRNA Plasmodium_knowlesi_strain_H|PK4.chr12.pseudo|2007-02-22|ds-DNA|Plasmodium_knowlesi_Sanger 97.80 91 2 0 4 94 2974818 2974908 4e-41 165
Plasmodium_falciparum_3D7|MAL14|MAL14_tRNA.SelCys1|Annotation|Plasmodium_falciparum_Sanger_Stanford_TIGR|(processed_transcript)tRNA Plasmodium_knowlesi_strain_H|PK4.chr12.pseudo|2007-02-22|ds-DNA|Plasmodium_knowlesi_Sanger 100.00 16 0 0 74 89 3048318 3048333 0.42 32.2
Plasmodium_falciparum_3D7|MAL14|MAL14_tRNA.SelCys1|Annotation|Plasmodium_falciparum_Sanger_Stanford_TIGR|(processed_transcript)tRNA Plasmodium_knowlesi_strain_H|PK4.chr12.pseudo|2007-02-22|ds-DNA|Plasmodium_knowlesi_Sanger 100.00 14 0 0 84 97 104961 104948 6.6 28.2
Plasmodium_falciparum_3D7|MAL14|MAL14_tRNA.SelCys1|Annotation|Plasmodium_falciparum_Sanger_Stanford_TIGR|(processed_transcript)tRNA Plasmodium_knowlesi_strain_H|PK4.chr12.pseudo|2007-02-22|ds-DNA|Plasmodium_knowlesi_Sanger 100.00 14 0 0 39 52 739114 739127 6.6 28.2
Plasmodium_falciparum_3D7|MAL14|MAL14_tRNA.SelCys1|Annotation|Plasmodium_falciparum_Sanger_Stanford_TIGR|(processed_transcript)tRNA Plasmodium_knowlesi_strain_H|PK4.chr12.pseudo|2007-02-22|ds-DNA|Plasmodium_knowlesi_Sanger 100.00 14 0 0 72 85 1876457 1876470 6.6 28.2
Plasmodium_falciparum_3D7|MAL14|MAL14_tRNA.SelCys1|Annotation|Plasmodium_falciparum_Sanger_Stanford_TIGR|(processed_transcript)tRNA Plasmodium_knowlesi_strain_H|PK4.chr03|2007-02-22|ds-DNA|Plasmodium_knowlesi_Sanger 100.00 15 0 0 79 93 817487 817501 1.7 30.2
Plasmodium_falciparum_3D7|MAL14|MAL14_tRNA.SelCys1|Annotation|Plasmodium_falciparum_Sanger_Stanford_TIGR|(processed_transcript)tRNA Plasmodium_knowlesi_strain_H|PK4.chr03|2007-02-22|ds-DNA|Plasmodium_knowlesi_Sanger 100.00 14 0 0 40 53 475262 475275 6.6 28.2
Plasmodium_falciparum_3D7|MAL14|MAL14_tRNA.SelCys1|Annotation|Plasmodium_falciparum_Sanger_Stanford_TIGR|(processed_transcript)tRNA Plasmodium_knowlesi_strain_H|chr10|2007-02-22|ds-DNA|Plasmodium_knowlesi_Sanger 100.00 15 0 0 57 71 1422408 1422422 1.7 30.2
Plasmodium_falciparum_3D7|MAL14|MAL14_tRNA.SelCys1|Annotation|Plasmodium_falciparum_Sanger_Stanford_TIGR|(processed_transcript)tRNA Plasmodium_knowlesi_strain_H|PK4.chr02|2007-02-22|ds-DNA|Plasmodium_knowlesi_Sanger 100.00 14 0 0 26 39 873967 873954 6.6 28.2
Plasmodium_falciparum_3D7|MAL14|MAL14_tRNA.SelCys1|Annotation|Plasmodium_falciparum_Sanger_Stanford_TIGR|(processed_transcript)tRNA Plasmodium_knowlesi_strain_H|PK4.chr13|2007-02-22|ds-DNA|Plasmodium_knowlesi_Sanger 100.00 14 0 0 55 68 1392663 1392650 6.6 28.2
Plasmodium_falciparum_3D7|MAL14|MAL14_tRNA.SelCys1|Annotation|Plasmodium_falciparum_Sanger_Stanford_TIGR|(processed_transcript)tRNA Plasmodium_knowlesi_strain_H|PK4.chr13|2007-02-22|ds-DNA|Plasmodium_knowlesi_Sanger 100.00 14 0 0 58 71 1525669 1525656 6.6 28.2
Plasmodium_falciparum_3D7|MAL14|MAL14_tRNA.SelCys1|Annotation|Plasmodium_falciparum_Sanger_Stanford_TIGR|(processed_transcript)tRNA Plasmodium_knowlesi_strain_H|PK4.chr13|2007-02-22|ds-DNA|Plasmodium_knowlesi_Sanger 100.00 14 0 0 72 85 1625268 1625255 6.6 28.2
Plasmodium_falciparum_3D7|MAL14|MAL14_tRNA.SelCys1|Annotation|Plasmodium_falciparum_Sanger_Stanford_TIGR|(processed_transcript)tRNA Plasmodium_knowlesi_strain_H|PK4.chr11.pseudo.embl|2007-02-22|ds-DNA|Plasmodium_knowlesi_Sanger 100.00 14 0 0 58 71 1629644 1629657 6.6 28.2
Plasmodium_falciparum_3D7|MAL14|MAL14_tRNA.SelCys1|Annotation|Plasmodium_falciparum_Sanger_Stanford_TIGR|(processed_transcript)tRNA Plasmodium_knowlesi_strain_H|PK4.chr11.pseudo.embl|2007-02-22|ds-DNA|Plasmodium_knowlesi_Sanger 100.00 14 0 0 53 66 1731181 1731168 6.6 28.2
Plasmodium_falciparum_3D7|MAL14|MAL14_tRNA.SelCys1|Annotation|Plasmodium_falciparum_Sanger_Stanford_TIGR|(processed_transcript)tRNA Plasmodium_knowlesi_strain_H|PK4.chr11.pseudo.embl|2007-02-22|ds-DNA|Plasmodium_knowlesi_Sanger 100.00 14 0 0 74 87 2244289 2244276 6.6 28.2
Plasmodium_falciparum_3D7|MAL14|MAL14_tRNA.SelCys1|Annotation|Plasmodium_falciparum_Sanger_Stanford_TIGR|(processed_transcript)tRNA Plasmodium_knowlesi_strain_H|PK4.chr05|2007-02-22|ds-DNA|Plasmodium_knowlesi_Sanger 100.00 14 0 0 72 85 569995 570008 6.6 28.2
Plasmodium_falciparum_3D7|MAL14|MAL14_tRNA.SelCys1|Annotation|Plasmodium_falciparum_Sanger_Stanford_TIGR|(processed_transcript)tRNA Plasmodium_knowlesi_strain_H|PK4.chr07|2007-02-22|ds-DNA|Plasmodium_knowlesi_Sanger 94.44 18 1 0 75 92 467122 467139 6.6 28.2
Plasmodium_falciparum_3D7|MAL14|MAL14_tRNA.SelCys1|Annotation|Plasmodium_falciparum_Sanger_Stanford_TIGR|(processed_transcript)tRNA Plasmodium_knowlesi_strain_H|PK4.chr07|2007-02-22|ds-DNA|Plasmodium_knowlesi_Sanger 100.00 14 0 0 58 71 1459952 1459939 6.6 28.2
Plasmodium_falciparum_3D7|MAL14|MAL14_tRNA.SelCys1|Annotation|Plasmodium_falciparum_Sanger_Stanford_TIGR|(processed_transcript)tRNA Plasmodium_knowlesi_strain_H|chr14|2007-02-22|ds-DNA|Plasmodium_knowlesi_Sanger 100.00 14 0 0 29 42 445399 445386 6.6 28.2
Plasmodium_falciparum_3D7|MAL14|MAL14_tRNA.SelCys1|Annotation|Plasmodium_falciparum_Sanger_Stanford_TIGR|(processed_transcript)tRNA Plasmodium_knowlesi_strain_H|chr14|2007-02-22|ds-DNA|Plasmodium_knowlesi_Sanger 100.00 14 0 0 72 85 455653 455666 6.6 28.2
Plasmodium_falciparum_3D7|MAL14|MAL14_tRNA.SelCys1|Annotation|Plasmodium_falciparum_Sanger_Stanford_TIGR|(processed_transcript)tRNA Plasmodium_knowlesi_strain_H|chr14|2007-02-22|ds-DNA|Plasmodium_knowlesi_Sanger 100.00 14 0 0 78 91 2300161 2300148 6.6 28.2
Plasmodium_falciparum_3D7|MAL14|MAL14_tRNA.SelCys1|Annotation|Plasmodium_falciparum_Sanger_Stanford_TIGR|(processed_transcript)tRNA Plasmodium_knowlesi_strain_H|chr14|2007-02-22|ds-DNA|Plasmodium_knowlesi_Sanger 100.00 14 0 0 39 52 3026485 3026498 6.6 28.2
BLASTN 2.2.17 [Aug-26-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Plasmodium_falciparum_3D7|MAL14|MAL14_tRNA.SelCys1|Annotation|P
lasmodium_falciparum_Sanger_Stanford_TIGR|(processed_transcript)tRNA
Selenocysteine tRNA, putative
(105 letters)
Database: genoma_PlasmoDB.fa
14 sequences; 23,462,190 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Plasmodium_knowlesi_strain_H|PK4.chr12.pseudo|2007-02-22|ds-DNA|... 165 4e-41
Plasmodium_knowlesi_strain_H|PK4.chr03|2007-02-22|ds-DNA|Plasmod... 30 1.7
Plasmodium_knowlesi_strain_H|chr10|2007-02-22|ds-DNA|Plasmodium_... 30 1.7
Plasmodium_knowlesi_strain_H|PK4.chr02|2007-02-22|ds-DNA|Plasmod... 28 6.6
Plasmodium_knowlesi_strain_H|PK4.chr13|2007-02-22|ds-DNA|Plasmod... 28 6.6
Plasmodium_knowlesi_strain_H|PK4.chr11.pseudo.embl|2007-02-22|ds... 28 6.6
Plasmodium_knowlesi_strain_H|PK4.chr05|2007-02-22|ds-DNA|Plasmod... 28 6.6
Plasmodium_knowlesi_strain_H|PK4.chr07|2007-02-22|ds-DNA|Plasmod... 28 6.6
Plasmodium_knowlesi_strain_H|chr14|2007-02-22|ds-DNA|Plasmodium_... 28 6.6
>Plasmodium_knowlesi_strain_H|PK4.chr12.pseudo|2007-02-22|ds-
DNA|Plasmodium_knowlesi_Sanger
Length = 3128370
Score = 165 bits (83), Expect = 4e-41
Identities = 89/91 (97%)
Strand = Plus / Plus
Query: 4 tgcaccgatgagttagcatggttgctaagtatgacttcaaatcatttggcgtagtttttc 63
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 2974818 tgcaccgatgagttagcatggttgctaagtatgacttcaaatcatttggcgtagaatttc 2974877
Query: 64 tgcgcagaggttcgattcctccttcggtgcg 94
|||||||||||||||||||||||||||||||
Sbjct: 2974878 tgcgcagaggttcgattcctccttcggtgcg 2974908
Score = 32.2 bits (16), Expect = 0.42
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 74 ttcgattcctccttcg 89
||||||||||||||||
Sbjct: 3048318 ttcgattcctccttcg 3048333
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 84 ccttcggtgcgacg 97
||||||||||||||
Sbjct: 104961 ccttcggtgcgacg 104948
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 39 ttcaaatcatttgg 52
||||||||||||||
Sbjct: 739114 ttcaaatcatttgg 739127
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 72 ggttcgattcctcc 85
||||||||||||||
Sbjct: 1876457 ggttcgattcctcc 1876470
>Plasmodium_knowlesi_strain_H|PK4.chr03|2007-02-22|ds-
DNA|Plasmodium_knowlesi_Sanger
Length = 973297
Score = 30.2 bits (15), Expect = 1.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 79 ttcctccttcggtgc 93
|||||||||||||||
Sbjct: 817487 ttcctccttcggtgc 817501
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 40 tcaaatcatttggc 53
||||||||||||||
Sbjct: 475262 tcaaatcatttggc 475275
>Plasmodium_knowlesi_strain_H|chr10|2007-02-22|ds-
DNA|Plasmodium_knowlesi_Sanger
Length = 1486039
Score = 30.2 bits (15), Expect = 1.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 57 gtttttctgcgcaga 71
|||||||||||||||
Sbjct: 1422408 gtttttctgcgcaga 1422422
>Plasmodium_knowlesi_strain_H|PK4.chr02|2007-02-22|ds-
DNA|Plasmodium_knowlesi_Sanger
Length = 1770351
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 26 tgctaagtatgact 39
||||||||||||||
Sbjct: 873967 tgctaagtatgact 873954
>Plasmodium_knowlesi_strain_H|PK4.chr13|2007-02-22|ds-
DNA|Plasmodium_knowlesi_Sanger
Length = 2200295
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 55 tagtttttctgcgc 68
||||||||||||||
Sbjct: 1392663 tagtttttctgcgc 1392650
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 58 tttttctgcgcaga 71
||||||||||||||
Sbjct: 1525669 tttttctgcgcaga 1525656
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 72 ggttcgattcctcc 85
||||||||||||||
Sbjct: 1625268 ggttcgattcctcc 1625255
>Plasmodium_knowlesi_strain_H|PK4.chr11.pseudo.embl|2007-02-22|ds-
DNA|Plasmodium_knowlesi_Sanger
Length = 2372884
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 58 tttttctgcgcaga 71
||||||||||||||
Sbjct: 1629644 tttttctgcgcaga 1629657
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 53 cgtagtttttctgc 66
||||||||||||||
Sbjct: 1731181 cgtagtttttctgc 1731168
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 74 ttcgattcctcctt 87
||||||||||||||
Sbjct: 2244289 ttcgattcctcctt 2244276
>Plasmodium_knowlesi_strain_H|PK4.chr05|2007-02-22|ds-
DNA|Plasmodium_knowlesi_Sanger
Length = 1324984
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 72 ggttcgattcctcc 85
||||||||||||||
Sbjct: 569995 ggttcgattcctcc 570008
>Plasmodium_knowlesi_strain_H|PK4.chr07|2007-02-22|ds-
DNA|Plasmodium_knowlesi_Sanger
Length = 1496036
Score = 28.2 bits (14), Expect = 6.6
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 75 tcgattcctccttcggtg 92
||||||||||||| ||||
Sbjct: 467122 tcgattcctccttgggtg 467139
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 58 tttttctgcgcaga 71
||||||||||||||
Sbjct: 1459952 tttttctgcgcaga 1459939
>Plasmodium_knowlesi_strain_H|chr14|2007-02-22|ds-
DNA|Plasmodium_knowlesi_Sanger
Length = 3159096
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 29 taagtatgacttca 42
||||||||||||||
Sbjct: 445399 taagtatgacttca 445386
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 72 ggttcgattcctcc 85
||||||||||||||
Sbjct: 455653 ggttcgattcctcc 455666
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 78 attcctccttcggt 91
||||||||||||||
Sbjct: 2300161 attcctccttcggt 2300148
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 39 ttcaaatcatttgg 52
||||||||||||||
Sbjct: 3026485 ttcaaatcatttgg 3026498
Database: genoma_PlasmoDB.fa
Posted date: Mar 6, 2008 12:02 PM
Number of letters in database: 23,462,190
Number of sequences in database: 14
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 14
Number of Hits to DB: 22,393
Number of extensions: 1070
Number of successful extensions: 22
Number of sequences better than 10.0: 9
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 22
Length of query: 105
Length of database: 23,462,190
Length adjustment: 16
Effective length of query: 89
Effective length of database: 23,461,966
Effective search space: 2088114974
Effective search space used: 2088114974
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
S2: 14 (28.2 bits)
