------------------------------
ARAGORN v1.2   Dean Laslett
------------------------------

Please reference the following paper if you use this
program as part of any published research.

Laslett, D. and Canback, B. (2004) ARAGORN, a
program for the detection of transfer RNA and
transfer-messenger RNA genes in nucleotide sequences.
Nucleic Acids Research, 32;11-16.


Searching for tRNA genes with no introns
Using standard genetic code for anticodon prediction
Assuming linear topology, search will not wrap around ends
Searching both strands


Plasmodium_knowlesi_strain_H|PK4.chr12.pseudo|2007-02-22|ds-DNA|Plasmodium_knowlesi_Sanger:subseq(2973908,4000) [revcomp]
4000 nucleotides in sequence
Mean G+C content = 37.0%
 
1.
 
 
                c
               g
             a-t
             c-g
             c-g
             g-c
             a-t
             t.t
             g-c    tt
            a   ctcc  a
    t      g    !!!!  g
   g acgatt     gagg  c
   g !!!!!!      a  tt
     tgctaa       c
    t      g       g
            t.tt    c
            a-t g    g
            t-a  g    t
            g-c   c    c
            a-t    g   t
           c   a    t   t
           t   a     a  t
            tca       g a
                       a
 
 

    tRNA-Sec(tca)
    87 bases, %GC = 46.0
    Sequence c[3002,3088]


 
1   .   10    .   20    .   30    .   40    .   50
accgatgagttagcatggttgctaagtatgacttcaaatcatttggcgta
gaatttctgcgcagaggttcgattcctccttcggtgc




The search took 0 wallclock secs ( 0.03 usr + 0.01 sys = 0.04 CPU)