genewise $Name: wise2-2-0 $ (unreleased release)
This program is freely distributed under a GPL. See source directory
Copyright (c) GRL limited: portions of the code are from separate copyright
Query protein: XP_001351031.1
Comp Matrix: blosum62.bla
Gap open: 12
Gap extension: 2
Start/End global
Target Sequence subseq(167000,5000)
Strand: forward
Start/End (protein) global
Gene Paras: human.gf
Codon Table: codon.table
Subs error: 1e-05
Indel error: 1e-05
Model splice? model
Model codon bias? flat
Model intron bias? tied
Null model syn
Algorithm 623
genewise output
Score 431.89 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
XP_001351031.1 1 MININVGVLGHVDSGKTSLCKCLSQVLSTCALDKHKESKERGITIDLGF
MIN+NVGVLGHVDSGKTSLC+CLS+VLSTCALDKH++S+E+GITIDLGF
MINVNVGVLGHVDSGKTSLCRCLSEVLSTCALDKHRQSQEKGITIDLGF
subseq(167000,5 695 aaagagggcgcggtgaaactatcaggcaatgtgacccacgagaaagcgt
ttatatgttgatacgacgtgggtgattgcgctaaagagaaagtctatgt
gttgcgcgggcgtgaagtccgcctagaccccgcgcggcgaacccctgcc
XP_001351031.1 50 SSFYIKKKKKKKYDVNQKREIQTNLLNDQTTDQKESFLYCKREEKNDLH
SSFY++++K+ + + + + + + K EE +D
SSFYLRRRKRNRDAEGAEGGHNGQITSREIPNGKVFHNELFEEEHSDGR
subseq(167000,5 842 ttttcaaaaaaaggggggggcagcaaacgacagagtcagctgggctgga
cctatgggagagacagcaggaagatcggatcagattaaattaaaacagg
gctcggggagcgcgaaaggcctgacatgatcttatcttatcgaatttta
XP_001351031.1 99 NIQYDKTNIEYNEEQNCYDYTNDKHHSNNIYFYDEEIIQICLVDCPGHH
E + D N +EE +QICLVDCPGHH
VCNGSACGGEVPSGEGSADPL-------NCSSAEEETLQICLVDCPGHH
subseq(167000,5 989 gtagagtggggcagggaggcc atttggggatcatcggtcgcc
tgaggcgggatcggaggcact agcccaaactatgttagcgaa
tcttttttaggccgggtttag cccccaaagggctcgctacct
XP_001351031.1 148 SLLKSIIMGSEITDIIILVIDINKGIQKQTIECLVLCKIINCDIIIVLN
SLL IIMG+EITD+I+L+IDI KGIQKQT+ECLVLC+++ D+++VLN
SLLNCIIMGAEITDMILLLIDITKGIQKQTVECLVLCEVLQRDVVVVLN
subseq(167000,5 1115 tccataaagggaagaacccagaaagacacaggtcgctggccagggggca
cttagtttgcatcattttttatcagtaaactagtttgattagattttta
cccctatgagaaacgccccatcgagtgggagatctgcagcaaccattat
XP_001351031.1 197 KIDLIPLHLREKKINLMKKKIQEAFYKFKSLQSLNYHIVSISANVKGKD
KIDL+P RE++I LMK+KI+ F L++L +++V +SA +K K
KIDLVPAEQRERRIKLMKEKIELVFRSKAGLRNLKWYVVGLSAQLK-KG
subseq(167000,5 1262 aagcgcggcagaaaacaagaagtgtaaaggtaacattgggttgcta ag
atattccaagaggtattaaatatttggacgtgatagattgtccata ag
aattcagagaaggcaaggaaagggtgtgctggtcagcggagttgga ga
XP_001351031.1 246 NKDVEGDPPNLLSHDKKGVKILLSGDNKDLPILLSDDKKDPPILLNDDK
PPN L K+ + P+ +DD
EPTAGAYPPNSLPPTDS--KLQSQSQWQCRPVSNADD---------GIG
subseq(167000,5 1406 gcagggtccatcccagt atctctctctccgaaggg gag
acccgcaccactcccac atacacagaggctgacaa gtg
aataaacacccccacca ggaaagaggttctccctc gac
XP_001351031.1 295 KDPPNLLNDDKKDPPNLLNDDKKDPPNLLNDDKKDPSILLSDDKKDPPN
PP N L+N LL + + P+ K+ N
ASPPRSEN-----VAQLIN--------LLREIIRVPT----RRGKNSHN
subseq(167000,5 1520 gtccaaga ggccaa ccagaaagca cagaatca
ccccggaa tcatta ttgattgtcc gggaacaa
cccgacac gtggtc cggaccagtg gagatact
XP_001351031.1 344 LLNDDKKDPPNLLNDDKKDPSILLNDHMNEWSQNKSSSDIPFMNKTINI
DD D DD D
GGGDDNND------DDGNDRG----------------------------
subseq(167000,5 1616 gggggaag gggagag
gggaaaaa aagaagg
ttctccct ttactaa
XP_001351031.1 393 KEIINVLTNIIKIPEREISTYEDFYFLYDHSFNIKGKGTIFTGTVIKGK
++FYFLYDH+F+IKGKG +TGTVI+G
--------------------GDEFYFLYDHTFDIKGKGRAYTGTVIRGT
subseq(167000,5 1661 gggtttctgcatgaagagagtagagacga
gaatattaaactatagaggcacgcttggc
tcacccccctgcctaaaggccgcatctga
XP_001351031.1 442 IKINCNVTILPLNETGKIKEIQSFKKNVHEGKKGSRLSLLILNNNIKNI
IK N V+ILP+ E GK+KEIQSFK+ V+EG +G+RLSLLI N++I+N
IKRNATVSILPMKEKGKVKEIQSFKQIVNEGTQGNRLSLLICNDHIRNS
subseq(167000,5 1748 aaaagagtaccaagagagagacatacagaggacgaattccatagcacaa
tagacctcttctaaagataatagtaattaagcagagtctttgaaatgag
cagccaccaaagaagagtggtgctagactaatgataaccaatctcaatt
XP_001351031.1 491 -KKNERGVIIYENSNISYFSMFICKVKQVEFYKKDLNNLEHFICIIGFS
KK ERGVI+ E SNI++FS+FIC+VK V++Y + +++ E + C+IGFS
GKKIERGVIVSEISNIAHFSIFICRVKLVQYYGRSISSSELLSCVIGFS
subseq(167000,5 1895 gaaagaggagtgataagcttatatcgatgcttgaaaaatgtcttgagtt
gaataggtttcatcatcatctttggtattaaagggtggcattcgttgtc
gaaaaatgctgaaatcgccctttttaggtatcggtatccaacttctctc
XP_001351031.1 539 STECYGYFFKKIKNKYETNESKKINYKENSQGHDVFPTLLEDTLNVDKR
++ CYGYFF+ I S++ Y + + PT + K
TSPCYGYFFRPINKDTGGMPSQRGRYLKQTS-----PTKACE----KKT
subseq(167000,5 2042 atcttgtttccaaagaggactccgatcacat caagtg aaa
cccgagattgctaaacggtccagggataacc ccacga aac
cttttgcttttccgctgcggcagaattgaca ccggta aat
XP_001351031.1 588 FDRKGNYLLINKLCYDDTQKENNNNNKKNKKNNNNKKNKKNGNKNEHSD
FD +G+YL IN++ ++ ++
FDPQGDYLFINQIIFEQEEQ-----------------------------
subseq(167000,5 2162 tgccggtctaacaatgcggc
tacagaatttaatttaaaaa
ctgagttctccaaacagaag
XP_001351031.1 637 DIIKNEHGEDINKNEHSDDNNKNEHGDDNNKNEHGDYINNNHLNDYINN
K + S++N K+
------------KKKESEENPKS--------------------------
subseq(167000,5 2222 aaagtggacat
aaaacaaacac
aaaaaggccaa
XP_001351031.1 686 NHLNDDVNNNHLNDDVNNSHLNDDVNNNHLNDDVNNNHLNDDVNNNHLN
-------------------------------------------------
subseq(167000,5 2255
XP_001351031.1 735 DDVNNSHLNNYDDDIYFLVVMKRKIHCFENEKCIFLKNDEHTNCRICLY
DD+++FLV++K+KI+C++ EKCIF+KN+E+ NCRICL+
-----------DDEFFFLVILKKKIYCYKKEKCIFIKNEENLNCRICLH
subseq(167000,5 2255 gggtttcgacaaaatttaagatataaaggatataatcc
aaatttttttaaatagaaaaagtttaaaaataggtgta
ctatccgctcgagacccaggattcaataatatcgttct
XP_001351031.1 784 GEIIEIIDNNCTYKKDDSFVFNKQPNIYKYEEYKDLKILKEKNKKGNID
G I +I+D+ ++K F+ K+P + + +K+ K+L EK K+G I+
GIIEDIVDDGYPHQKTP-FIAGKKPTLSDFSRFKNFKMLIEKQKRGEIE
subseq(167000,5 2369 gaaggaggggtcccaac taggaacacagttctaataatagacaaggag
gttaattaagacaaacc ttcgaacctgatcgtaatatttaaaaggata
attgcctttccttaggt ccaagaattccttttgccagataggggagta
XP_001351031.1 833 KIIDEHTIICKKLFQSSNQVIPYIYKKIYIVKSTYDQKNGNTTSGNTSN
++ D+HT++C+ +F+ S QV PY+ K+I +V + Y +
RVQDDHTVVCRNMFRCSTQVAPYLGKEICLVDADYKSDLRDV------E
subseq(167000,5 2513 cgcggcaggtaaatcttacggcttgagatcggggtaagccgg g
gtaaaacttggattggccatccatgaatgttacaaagatgat a
cggctctgctatgtacttacaccgaagttggtatcgttattt a
XP_001351031.1 882 VLHTGTIIKPFAKQGKAIVSFDEDISYLKNDIKSYNFLLVYYKDVFSKK
V H G I PFAK GK I F ED+S ++ + KS+ +++ YYKD ++K+
VRHIGVITAPFAKSGKFIAHFQEDLSLIRENYKSFLLIIKYYKDALTKR
subseq(167000,5 2642 gacaggaagctgaagatagctcggctcaagatattccaaattaggcaaa
tgatgttccctcaggattcataaatcttgaaaactttttaaaaactcag
catcctactgtaatagcctctgattctagatcacccgtcgtcgcccagg
XP_001351031.1 931 KVFL
KVFL
KVFL
subseq(167000,5 2789 agtc
attt
agtc
//
Gene 1
Gene 695 2800
Exon 695 2800 phase 0
//
>subseq(167000,5000).[695:2800].sp.tr
MINVNVGVLGHVDSGKTSLCRCLSEVLSTCALDKHRQSQEKGITIDLGFSSFYLRRRKRN
RDAEGAEGGHNGQITSREIPNGKVFHNELFEEEHSDGRVCNGSACGGEVPSGEGSADPLN
CSSAEEETLQICLVDCPGHHSLLNCIIMGAEITDMILLLIDITKGIQKQTVECLVLCEVL
QRDVVVVLNKIDLVPAEQRERRIKLMKEKIELVFRSKAGLRNLKWYVVGLSAQLKKGEPT
AGAYPPNSLPPTDSKLQSQSQWQCRPVSNADDGIGASPPRSENVAQLINLLREIIRVPTR
RGKNSHNGGGDDNNDDDGNDRGGDEFYFLYDHTFDIKGKGRAYTGTVIRGTIKRNATVSI
LPMKEKGKVKEIQSFKQIVNEGTQGNRLSLLICNDHIRNSGKKIERGVIVSEISNIAHFS
IFICRVKLVQYYGRSISSSELLSCVIGFSTSPCYGYFFRPINKDTGGMPSQRGRYLKQTS
PTKACEKKTFDPQGDYLFINQIIFEQEEQKKKESEENPKSDDEFFFLVILKKKIYCYKKE
KCIFIKNEENLNCRICLHGIIEDIVDDGYPHQKTPFIAGKKPTLSDFSRFKNFKMLIEKQ
KRGEIERVQDDHTVVCRNMFRCSTQVAPYLGKEICLVDADYKSDLRDVEVRHIGVITAPF
AKSGKFIAHFQEDLSLIRENYKSFLLIIKYYKDALTKRKVFL
//
>subseq(167000,5000).[695:2800].sp
ATGATTAATGTGAACGTGGGCGTGCTGGGGCACGTGGATTCGGGAAAAACGAGTCTCTGC
AGGTGCCTCAGTGAAGTGCTAAGCACCTGCGCCTTGGACAAGCACCGGCAGAGCCAGGAA
AAAGGCATCACCATCGATCTGGGCTTCTCGTCCTTTTACCTGAGGAGGAGGAAAAGGAAC
AGGGACGCGGAAGGAGCAGAGGGGGGCCACAATGGGCAAATCACAAGTCGGGAAATTCCC
AATGGTAAAGTTTTCCATAATGAACTTTTCGAGGAAGAACATTCTGATGGTAGAGTTTGC
AATGGTAGTGCTTGTGGTGGAGAGGTGCCCAGCGGGGAGGGGAGTGCTGATCCACTGAAC
TGCTCCTCCGCCGAAGAAGAAACGTTGCAGATCTGTCTCGTGGACTGTCCAGGCCACCAT
TCCCTCCTCAACTGTATAATTATGGGAGCGGAAATAACAGACATGATCCTCCTCCTCATA
GATATCACGAAAGGGATTCAGAAGCAGACAGTGGAATGTCTCGTTCTGTGCGAAGTGCTC
CAAAGAGACGTCGTAGTTGTTCTAAATAAAATAGATCTTGTCCCAGCGGAACAGAGAGAA
AGGAGGATCAAACTAATGAAGGAAAAAATAGAGTTGGTGTTTAGGAGTAAGGCCGGTTTG
AGGAATCTCAAATGGTACGTGGTGGGATTGTCTGCTCAGTTGAAAAAGGGAGAACCAACT
GCAGGAGCATACCCACCCAACTCCCTCCCCCCAACCGACTCAAAGTTGCAATCACAATCG
CAATGGCAGTGTCGTCCCGTTAGCAACGCCGATGACGGGATAGGCGCCTCCCCCCCGAGA
AGCGAAAACGTGGCTCAGCTGATTAACCTCCTGAGGGAAATCATCAGAGTGCCTACGCGG
AGAGGGAAAAATTCACACAATGGTGGTGGCGATGACAACAACGATGATGATGGAAACGAT
AGAGGAGGTGACGAATTCTACTTCCTCTACGACCATACGTTCGACATTAAAGGAAAAGGG
AGGGCCTACACGGGCACAGTTATCCGTGGGACAATCAAAAGGAACGCCACAGTCTCCATA
CTACCAATGAAAGAAAAGGGAAAGGTTAAGGAGATTCAGAGCTTTAAACAGATAGTCAAT
GAAGGAACTCAGGGAAATAGATTATCCCTCCTAATATGTAACGATCACATACGAAATAGT
GGGAAAAAAATAGAAAGAGGTGTGATCGTTTCGGAAATATCAAATATCGCGCACTTCTCC
ATTTTTATTTGTCGTGTAAAGTTGGTTCAATATTACGGGAGGAGTATAAGTAGCTCCGAA
TTACTCTCTTGTGTCATTGGCTTTTCCACCTCTCCTTGTTATGGGTACTTTTTTCGTCCT
ATCAACAAGGACACTGGGGGCATGCCGTCCCAACGGGGAAGATATCTTAAGCAAACCTCA
CCCACCAAGGCGTGTGAAAAAAAAACTTTCGATCCGCAAGGGGATTATCTCTTTATCAAC
CAAATAATATTCGAACAGGAAGAACAGAAAAAAAAAGAATCAGAGGAGAACCCCAAATCA
GACGATGAATTTTTCTTCCTGGTCATTCTCAAGAAAAAGATATACTGCTACAAAAAGGAG
AAATGTATTTTCATAAAAAATGAAGAAAATTTAAATTGCAGGATTTGTCTCCATGGAATT
ATTGAGGACATCGTTGATGATGGCTACCCTCATCAAAAGACGCCTTTCATCGCAGGAAAG
AAACCAACTCTTAGCGACTTTTCTCGTTTTAAGAACTTCAAAATGTTAATTGAAAAGCAG
AAGAGGGGAGAGATTGAACGCGTGCAGGACGATCACACTGTGGTCTGTAGAAATATGTTT
CGATGCTCTACTCAAGTCGCACCCTACTTGGGAAAAGAGATTTGTCTGGTGGATGCAGAT
TACAAGAGTGATCTACGTGATGTTGAAGTCAGACATATCGGCGTTATAACCGCTCCGTTT
GCAAAAAGTGGAAAGTTCATCGCTCACTTTCAGGAAGATCTTTCCCTTATAAGGGAAAAT
TACAAATCCTTCCTCCTGATTATCAAGTATTACAAGGACGCCCTCACAAAGAGGAAAGTG
TTTCTC
//
