CLUSTAL FORMAT for T-COFFEE Version_5.05 [http://www.tcoffee.org], CPU=68.29 sec, SCORE=43, Nseq=3, Len=4398
Plasmodium_knowlesi_strain_H|P ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P_2 CTTTGTAGCGTTTTCAATTTTTTTTTTTTAAAGGCAAGCGCGCATGCTGCATGTGTGGAT
Plasmodium_knowlesi_strain_H|P_1 ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P_2 GCTTCGTGTGTACATCCATGGGTGCTCGCGTTGCCCCTTTTTTTTAAGTACTCCCACCGC
Plasmodium_knowlesi_strain_H|P_1 ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P_2 TCGTCCACTCGGTGAGAAAGCCAAAATGGGAAGTAAAAAGAAAAGTATGTGTAAAAAAAA
Plasmodium_knowlesi_strain_H|P_1 ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P_2 GAGAAGATAATGCGAATGCTAATACCTATGAATGGCTATGTGTACGAATAAGGGCACGCA
Plasmodium_knowlesi_strain_H|P_1 ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P_2 ACGGAGAAAAGGGCGAATCACGTGGATAGCTCGAACCATTGGCACAGGCTGCCGACCCTC
Plasmodium_knowlesi_strain_H|P_1 ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P_2 ATCGACGGTTCTTTAAACAACCCCAACATATATGCACCCAAGTGAACCTGGGTGTTGTTC
Plasmodium_knowlesi_strain_H|P_1 ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P_2 CGTCTGTACCCCAATTTGAGTTTCATCGTTTGAGTAGTTTAATTCTTTTTATTCTTCCTG
Plasmodium_knowlesi_strain_H|P_1 ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P_2 CTCTTGCTCCTGTTGCTTTTTTTTTTTTTTTTTTTTTTTTTTTCTCCTTCATGTTCATTT
Plasmodium_knowlesi_strain_H|P_1 ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P_2 TTACTACCATGTGTGCGAAGCGGAGTTGCCTTCATATGCGCGTGTTTGACAATGTGAAAT
Plasmodium_knowlesi_strain_H|P_1 ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P_2 GGGGACATGCACACATGCAGGCATGTACATGTGTTGATTTGTGGATGCCGCATTGTGCCC
Plasmodium_knowlesi_strain_H|P_1 ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P_2 ACTTTTTGCACTGTGTCCGCTTTGAAGGATAAAGCTGCTTCTTCGTTTTACTCCGTAGCC
Plasmodium_knowlesi_strain_H|P_1 ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P_2 TCGTATTTATTCTATATTGATTGTTTTTTTTTTTTTTTGGGGGGGGGAGTGTGAATAATC
Plasmodium_knowlesi_strain_H|P_1 ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P_2 CCCCCTTTCACTGCTATTTCCATCTCCATTCCCACTGCCCATACTATTCCCCCTCATATT
Plasmodium_knowlesi_strain_H|P_1 ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P_2 CTTGTGTAAATTCGCATGGATATGTGAAGAAGTGTATTTTTGTGCATGTAGAGGTGTGTG
Plasmodium_knowlesi_strain_H|P_1 ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P_2 TTGTACACAATATATAGAGCTTCGCCGCACACCTAACACAAAAGAAAAGGAATGGTGTTT
Plasmodium_knowlesi_strain_H|P_1 ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P_2 TCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCCTTTGCATAGTTTTATTTTATCTAGC
Plasmodium_knowlesi_strain_H|P_1 ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P_2 TAAAAAAAGAAAAAAAAAAAAATTAATATCCCCCTTAAAAAAAAAAAAAAAAAAAAAAAA
Plasmodium_knowlesi_strain_H|P_1 ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P_2 AAAAGAAGAAGAAAAAAAAAGCCAAACAGTGAACGGGAATAAAGTGGCTAAAGGCAAAAC
Plasmodium_knowlesi_strain_H|P_1 ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P_2 GGCGAAAATGCCAAAAGTTAAAATGGCCCATAGGAAGAAGTTAAAATGGCTTATTGCTAA
Plasmodium_knowlesi_strain_H|P_1 ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P_2 ATGCTAAAATGGCTGATTGCCGAATGCTAAAATGAACGGGCGTCATAAAATCGTTGTGGG
Plasmodium_knowlesi_strain_H|P_1 ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P_2 CGATGTGGACCGCCTGACGAAAGAGAAAAACGCTCGTATCAATCAGTGACAAACAACAGT
Plasmodium_knowlesi_strain_H|P_1 ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P_2 TGTGCTTGTCCTATTTCCTATTCTGTACAGACCCTTAACGGAGCTCTTTATCATCCGTTA
Plasmodium_knowlesi_strain_H|P_1 ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P_2 CTTTGCGTTGCTCATTTTAATTAGCTTATTTTATTTTTTTTTTGTTGTTTTAATTTTTTA
Plasmodium_knowlesi_strain_H|P_1 ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P_2 TTTTTTTTCTGTAGTGCTCACTTGCACACATCGTCATTGACCTCTCCGAGTTAACCCTTT
Plasmodium_knowlesi_strain_H|P_1 ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P_2 TAATACCTCACTTCCACGTGAGCATACTTCAAAACACTTGTTTTTCTTCCTCCTTTGGAG
Plasmodium_knowlesi_strain_H|P_1 ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P_2 AAGTTCCAGGATAGTATTTATTCTTAAAGCCACTTGAATGTGCACTTCCCCCTTAGGGGG
Plasmodium_knowlesi_strain_H|P_1 ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P_2 GGGTATCGCTATTTGGAGAAAATCTTTTGGACAATCACCCTGGTCCACGCTAAGCGATGC
Plasmodium_knowlesi_strain_H|P_1 ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P_2 GTATCGAAATTGAAAAGAGAATTAGCACAGAATAGGGCATCGACCATGTCAATATGCCAG
Plasmodium_knowlesi_strain_H|P_1 ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P_2 ATGGAAAAGGTGGACGTGGACGGTTTGGTTTCCTTCTTTCCCCATTTTGGGGCTGCCTTT
Plasmodium_knowlesi_strain_H|P_1 ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P_2 CAAGGGAAGCGCCAACCCATTACAGCTTAGGCATTCGTCACCTCTATAGGTTATCCCCTC
Plasmodium_knowlesi_strain_H|P_1 ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P_2 AGCTACTTCTATATGTAAAAGGGTATCTCCCCGTTGCGCTGCTCTGCTTACCCACCTGTG
Plasmodium_knowlesi_strain_H|P_1 ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P_2 AGGTACATACCTGCTAATGATCGGCGAGGAAAGGGGGGGAGGACGGAATCCTCCCATCTC
Plasmodium_knowlesi_strain_H|P_1 ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P_2 ATGCGTATATCAGGAAGTATGCCCACGGTAAGGATGCCTCCCCTAGGTGAATAAAAAAAT
Plasmodium_knowlesi_strain_H|P_1 ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P_2 ATCAGGCCCCAATTATCCATCTTCTTTGAATTGCCCAACTGTTTACGAAAATGTGTGGAG
Plasmodium_knowlesi_strain_H|P_1 ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P_2 ATCTGTGTGGCTCCTTTTACACACTCTCTCCGGGTGAACGTGTGCACACGTTTTTTTTTT
Plasmodium_knowlesi_strain_H|P_1 ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P_2 TTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTGTGGTCGCGGCGCGAATGGCGAAGCGGCT
Plasmodium_knowlesi_strain_H|P_1 ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P_2 ATCCTACTGAAAAAAATAATCCCCTTCTGTATTATCAAAAAGGAGAAGAGCTCAATTGCA
Plasmodium_knowlesi_strain_H|P_1 ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P_2 TATTCACCTGGAAGTAGGTATGACCGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAAA
Plasmodium_knowlesi_strain_H|P_1 ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P_2 ATGACAGCGACAGTGATGTCAACAGGTCTGTGATGAGAGAGTTCCATATGGAAGGCCCTC
Plasmodium_knowlesi_strain_H|P_1 ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P_2 GCGTGGATCCCCCTACGAGCGCAAAGTGTAGCAGTTAGGCGGTTCCAGTGTGGAGAATTT
Plasmodium_knowlesi_strain_H|P_1 ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P_2 TATCCCCCTCCCCCCCCCATACTATCCGCCCCTGTTGCATCTACCCTTGTAGGGTACCTA
Plasmodium_knowlesi_strain_H|P_1 ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P_2 CACGTTAATCTGCCAACCACGCTCGCCTCTTCCACGGAGCCCTCCCCCCCCTGAACAGAG
Plasmodium_knowlesi_strain_H|P_1 ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P_2 AGCAGCATGAACAAGAGGCTTGCCAGCCTGGCCATATCGTCCATCAAGCTGGAAGCATCG
Plasmodium_knowlesi_strain_H|P_1 ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P_2 CAACATCTCTTTGTGAGAGAGGTGAGGCTTTTTCTGCATAGCAGTGGATTTGCCCGAGCA
Plasmodium_knowlesi_strain_H|P_1 ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P_2 AGTATTCCACCTCGAAAAATCATCGAACAATTGAGGCATCCAGTAAAATCCCCACGTTGG
Plasmodium_knowlesi_strain_H|P_1 ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P_2 CATATTGAGTCCCTCCAGAGGAGAAATTTCTTCCAAGTATTTTTGAAAGAAACGATGAGT
Plasmodium_knowlesi_strain_H|P_1 ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P ------------------------------------------------------------
Plasmodium_knowlesi_strain_H|P_2 AACGCAAAGAGCGAGAACCCAAAATACGGACATGCGCAGATGGAAGGGAAAAACGCATTG
Plasmodium_knowlesi_strain_H|P_1 ------------------CCAAAATACGGACATGCGCAGATGGAAGGGAAAAACGCATTG
Plasmodium_knowlesi_strain_H|P ---------------------------AGTAACAACCACGAATGTAAATCCCAGGGAGAG
Plasmodium_knowlesi_strain_H|P_2 GAGAAGGGAGGAACTCACCCTAATCAAAGTAACAACCACGAATGTAAATCCCAGGGAGAG
Plasmodium_knowlesi_strain_H|P_1 GAGAAGGGAGGAACTCACCCTAATCAAAGTAACAACCACGAATGTAAATCCCAGGGAGAG
*********************************
Plasmodium_knowlesi_strain_H|P TGCAATTATGATTACGACTATGTGGTTATCGGGGGAGGCCCCGGTGGAATGGCATCCGCG
Plasmodium_knowlesi_strain_H|P_2 TGCAATTATGATTACGACTATGTGGTTATCGGGGGAGGCCCCGGTGGAATGGCATCCGCG
Plasmodium_knowlesi_strain_H|P_1 TGCAATTATGATTACGACTATGTGGTTATCGGGGGAGGCCCCGGTGGAATGGCATCCGCG
************************************************************
Plasmodium_knowlesi_strain_H|P AAGGAGGCAGCGTCACATGGAGCAAAGGTACTCCTTTTCGATTATGTTAAGCCAAGTAAC
Plasmodium_knowlesi_strain_H|P_2 AAGGAGGCAGCGTCACATGGAGCAAAGGTACTCCTTTTCGATTATGTTAAGCCAAGTAAC
Plasmodium_knowlesi_strain_H|P_1 AAGGAGGCAGCGTCACATGGAGCAAAGGTACTCCTTTTCGATTATGTTAAGCCAAGTAAC
************************************************************
Plasmodium_knowlesi_strain_H|P AAAGGAACCAAGTGGGGAATAGGAGGCACCTGTGTGAATGTCGGTTGTGTGCCAAAGAAA
Plasmodium_knowlesi_strain_H|P_2 AAAGGAACCAAGTGGGGAATAGGAGGCACCTGTGTGAATGTCGGTTGTGTGCCAAAGAAA
Plasmodium_knowlesi_strain_H|P_1 AAAGGAACCAAGTGGGGAATAGGAGGCACCTGTGTGAATGTCGGTTGTGTGCCAAAGAAA
************************************************************
Plasmodium_knowlesi_strain_H|P TTAATGCATTACGCAGGAAATATGGGTAGCCTTTTCAAGATGGATTCTAATCCATACGGT
Plasmodium_knowlesi_strain_H|P_2 TTAATGCATTACGCAGGAAATATGGGTAGCCTTTTCAAGATGGATTCTAATCCATACGGT
Plasmodium_knowlesi_strain_H|P_1 TTAATGCATTACGCAGGAAATATGGGTAGCCTTTTCAAGATGGATTCTAATCCATACGGT
************************************************************
Plasmodium_knowlesi_strain_H|P TGGTCTTATAACAATTTAATTCATAACTGGGGGAAGCTAGTTACCACGGTTCAGTCACAT
Plasmodium_knowlesi_strain_H|P_2 TGGTCTTATAACAATTTAATTCATAACTGGGGGAAGCTAGTTACCACGGTTCAGTCACAT
Plasmodium_knowlesi_strain_H|P_1 TGGTCTTATAACAATTTAATTCATAACTGGGGGAAGCTAGTTACCACGGTTCAGTCACAT
************************************************************
Plasmodium_knowlesi_strain_H|P ATACGTTCTCTAAATTTTAGCTACATGACTGGACTTAGATCCTCTAAGGTGAAGTACATG
Plasmodium_knowlesi_strain_H|P_2 ATACGTTCTCTAAATTTTAGCTACATGACTGGACTTAGATCCTCTAAGGTGAAGTACATG
Plasmodium_knowlesi_strain_H|P_1 ATACGTTCTCTAAATTTTAGCTACATGACTGGACTTAGATCCTCTAAGGTGAAGTACATG
************************************************************
Plasmodium_knowlesi_strain_H|P AACGGATTAGCCAGTCTGAAGGATGAACATACGGTGTCGTATTACCTAAAGGGAGACATG
Plasmodium_knowlesi_strain_H|P_2 AACGGATTAGCCAGTCTGAAGGATGAACATACGGTGTCGTATTACCTAAAGGGAGACATG
Plasmodium_knowlesi_strain_H|P_1 AACGGATTAGCCAGTCTGAAGGATGAACATACGGTGTCGTATTACCTAAAGGGAGACATG
************************************************************
Plasmodium_knowlesi_strain_H|P TCTAAGGAAGAGTTGGTTACGGCCAAGTACATTCTCATCGCTACCGGGTGTAGACCAAGT
Plasmodium_knowlesi_strain_H|P_2 TCTAAGGAAGAGTTGGTTACGGCCAAGTACATTCTCATCGCTACCGGGTGTAGACCAAGT
Plasmodium_knowlesi_strain_H|P_1 TCTAAGGAAGAGTTGGTTACGGCCAAGTACATTCTCATCGCTACCGGGTGTAGACCAAGT
************************************************************
Plasmodium_knowlesi_strain_H|P ATCCCAGACGATGTGGAAGGAGCAAAAGAACTTAGCATTACATCAGACGATATTTTTTCT
Plasmodium_knowlesi_strain_H|P_2 ATCCCAGACGATGTGGAAGGAGCAAAAGAACTTAGCATTACATCAGACGATATTTTTTCT
Plasmodium_knowlesi_strain_H|P_1 ATCCCAGACGATGTGGAAGGAGCAAAAGAACTTAGCATTACATCAGACGATATTTTTTCT
************************************************************
Plasmodium_knowlesi_strain_H|P ATGAAGAAGGATCCAGGAAAAACTCTAATTGTTGGAGCTTCTTACGTTGCTTTAGAGTGT
Plasmodium_knowlesi_strain_H|P_2 ATGAAGAAGGATCCAGGAAAAACTCTAATTGTTGGAGCTTCTTACGTTGCTTTAGAGTGT
Plasmodium_knowlesi_strain_H|P_1 ATGAAGAAGGATCCAGGAAAAACTCTAATTGTTGGAGCTTCTTACGTTGCTTTAGAGTGT
************************************************************
Plasmodium_knowlesi_strain_H|P GCAGGATTTTTGAACTCATTAGGATATGATGTCACCGTTGCAGTGAGGTCCATTGTATTG
Plasmodium_knowlesi_strain_H|P_2 GCAGGATTTTTGAACTCATTAGGATATGATGTCACCGTTGCAGTGAGGTCCATTGTATTG
Plasmodium_knowlesi_strain_H|P_1 GCAGGATTTTTGAACTCATTAGGATATGATGTCACCGTTGCAGTGAGGTCCATTGTATTG
************************************************************
Plasmodium_knowlesi_strain_H|P CGAGGGTTTGATTCTCAGTGTGCACTCAAGGTAAAGATTTACATGGAGGAACAGGGGGTT
Plasmodium_knowlesi_strain_H|P_2 CGAGGGTTTGATTCTCAGTGTGCACTCAAGGTAAAGATTTACATGGAGGAACAGGGGGTT
Plasmodium_knowlesi_strain_H|P_1 CGAGGGTTTGATTCTCAGTGTGCACTCAAGGTAAAGATTTACATGGAGGAACAGGGGGTT
************************************************************
Plasmodium_knowlesi_strain_H|P CTCTTCAAACATGGGGTTCTTCCAAAGAAGTTATCGAAAATGGAGGGAGAAAAAATATCT
Plasmodium_knowlesi_strain_H|P_2 CTCTTCAAACATGGGGTTCTTCCAAAGAAGTTATCGAAAATGGAGGGAGAAAAAATATCT
Plasmodium_knowlesi_strain_H|P_1 CTCTTCAAACATGGGGTTCTTCCAAAGAAGTTATCGAAAATGGAGGGAGAAAAAATATCT
************************************************************
Plasmodium_knowlesi_strain_H|P GTTCTCTTCAATGATGGAACCACTGAGCTATTTGATACCGTTCTCTACGCAACAGGAAGG
Plasmodium_knowlesi_strain_H|P_2 GTTCTCTTCAATGATGGAACCACTGAGCTATTTGATACCGTTCTCTACGCAACAGGAAGG
Plasmodium_knowlesi_strain_H|P_1 GTTCTCTTCAATGATGGAACCACTGAGCTATTTGATACCGTTCTCTACGCAACAGGAAGG
************************************************************
Plasmodium_knowlesi_strain_H|P AAAGGAGACATCGACATGCTCAATCTGGATCAGGTCAAAATACAAGTTAATAAAAATACA
Plasmodium_knowlesi_strain_H|P_2 AAAGGAGACATCGACATGCTCAATCTGGATCAGGTCAAAATACAAGTTAATAAAAATACA
Plasmodium_knowlesi_strain_H|P_1 AAAGGAGACATCGACATGCTCAATCTGGATCAGGTCAAAATACAAGTTAATAAAAATACA
************************************************************
Plasmodium_knowlesi_strain_H|P AACAAAATTATTACCAATGAGGTTAGCTGCACAAATATTTCGAATATCTTTGCCGTGGGG
Plasmodium_knowlesi_strain_H|P_2 AACAAAATTATTACCAATGAGGTTAGCTGCACAAATATTTCGAATATCTTTGCCGTGGGG
Plasmodium_knowlesi_strain_H|P_1 AACAAAATTATTACCAATGAGGTTAGCTGCACAAATATTTCGAATATCTTTGCCGTGGGG
************************************************************
Plasmodium_knowlesi_strain_H|P GATGTGGCAGTTGATGTTCCTGAGTTAGCACCTGTAGCTATCAAAGCGGGGGAGATTTTA
Plasmodium_knowlesi_strain_H|P_2 GATGTGGCAGTTGATGTTCCTGAGTTAGCACCTGTAGCTATCAAAGCGGGGGAGATTTTA
Plasmodium_knowlesi_strain_H|P_1 GATGTGGCAGTTGATGTTCCTGAGTTAGCACCTGTAGCTATCAAAGCGGGGGAGATTTTA
************************************************************
Plasmodium_knowlesi_strain_H|P GCCAGGAGGTTATTTAACCAATCGGAAGAAATTATGGACTACACATTCATACCGACATCT
Plasmodium_knowlesi_strain_H|P_2 GCCAGGAGGTTATTTAACCAATCGGAAGAAATTATGGACTACACATTCATACCGACATCT
Plasmodium_knowlesi_strain_H|P_1 GCCAGGAGGTTATTTAACCAATCGGAAGAAATTATGGACTACACATTCATACCGACATCT
************************************************************
Plasmodium_knowlesi_strain_H|P ATTTATACACCCATCGAGTATGGAACTTGTGGATATTCAGAAGAAAAGGCGTACGAAATT
Plasmodium_knowlesi_strain_H|P_2 ATTTATACACCCATCGAGTATGGAACTTGTGGATATTCAGAAGAAAAGGCGTACGAAATT
Plasmodium_knowlesi_strain_H|P_1 ATTTATACACCCATCGAGTATGGAACTTGTGGATATTCAGAAGAAAAGGCGTACGAAATT
************************************************************
Plasmodium_knowlesi_strain_H|P TTTGGCACATCCAATGTAGAAGTGTTCCTTCAAGAGTTTAACAATTTAGAAATATCTGCT
Plasmodium_knowlesi_strain_H|P_2 TTTGGCACATCCAATGTAGAAGTGTTCCTTCAAGAGTTTAACAATTTAGAAATATCTGCT
Plasmodium_knowlesi_strain_H|P_1 TTTGGCACATCCAATGTAGAAGTGTTCCTTCAAGAGTTTAACAATTTAGAAATATCTGCT
************************************************************
Plasmodium_knowlesi_strain_H|P GTGCATAGGGAGAAGCATGTTCGAGCACAGAAGGATCAGTATGATACAGATGTGAGTAGC
Plasmodium_knowlesi_strain_H|P_2 GTGCATAGGGAGAAGCATGTTCGAGCACAGAAGGATCAGTATGATACAGATGTGAGTAGC
Plasmodium_knowlesi_strain_H|P_1 GTGCATAGGGAGAAGCATGTTCGAGCACAGAAGGATCAGTATGATACAGATGTGAGTAGC
************************************************************
Plasmodium_knowlesi_strain_H|P ACCTGCTTGTCCAAACTCGTTTGTTTAAAAAATGAAGACAATCGGGTGGTTGGTTTTCAT
Plasmodium_knowlesi_strain_H|P_2 ACCTGCTTGTCCAAACTCGTTTGTTTAAAAAATGAAGACAATCGGGTGGTTGGTTTTCAT
Plasmodium_knowlesi_strain_H|P_1 ACCTGCTTGTCCAAACTCGTTTGTTTAAAAAATGAAGACAATCGGGTGGTTGGTTTTCAT
************************************************************
Plasmodium_knowlesi_strain_H|P TATGTGGGTCCTAATGCCGGAGAAATTACTCAGGGTATGGCTCTCGCCTTAAGACTGAAG
Plasmodium_knowlesi_strain_H|P_2 TATGTGGGTCCTAATGCCGGAGAAATTACTCAGGGTATGGCTCTCGCCTTAAGACTGAAG
Plasmodium_knowlesi_strain_H|P_1 TATGTGGGTCCTAATGCCGGAGAAATTACTCAGGGTATGGCTCTCGCCTTAAGACTGAAG
************************************************************
Plasmodium_knowlesi_strain_H|P GCTAAAAAGAGCGATTTCGATAAATGCATCGGCATTCACCCCACCGATGCTGAGTCTTTC
Plasmodium_knowlesi_strain_H|P_2 GCTAAAAAGAGCGATTTCGATAAATGCATCGGCATTCACCCCACCGATGCTGAGTCT---
Plasmodium_knowlesi_strain_H|P_1 GCTAAAAAGAGCGATTTCGATAAATGCATCGGCATTCACCCCACCGATGCTGAGTCTTTC
*********************************************************
Plasmodium_knowlesi_strain_H|P ATGAACCTCACGATCACGCGATCGTCGGGACTGTCCTTTGCTGCCAAGGGGGGCTGCGGC
Plasmodium_knowlesi_strain_H|P_2 -------------TCACGCGATCGTCGGGACTGTCCTTTGCTGCCAAGGGGGGCTGCGGC
Plasmodium_knowlesi_strain_H|P_1 ATGAACCTCACGATCACGCGATCGTCGGGACTGTCCTTTGCTGCCAAGGGGGGCTGCGGC
***********************************************
Plasmodium_knowlesi_strain_H|P GGGGGCAAGTGTGGCTAA
Plasmodium_knowlesi_strain_H|P_2 GGGGGCAAGTGTGGCTAA
Plasmodium_knowlesi_strain_H|P_1 GGGGGCAAGTGTGGCTAA
******************
WARNING RECAPITULATION: 1 Warning [PROGRAM: T-COFFEE]
Warning: Sequence Plasmodium_knowlesi_strain_H|P is duplicated in file /ebi/extserv/old-work//tcoffee-20080304-10581178.input. The sequence will be renamed
