TR1
genewise $Name: wise2-2-0 $ (unreleased release)
This program is freely distributed under a GPL. See source directory
Copyright (c) GRL limited: portions of the code are from separate copyright
Query protein: SPP00000034_1.0
Comp Matrix: blosum62.bla
Gap open: 12
Gap extension: 2
Start/End global
Target Sequence subseq(908011,5472)
Strand: forward
Start/End (protein) global
Gene Paras: human.gf
Codon Table: codon.table
Subs error: 1e-05
Indel error: 1e-05
Model splice? model
Model codon bias? flat
Model intron bias? tied
Null model syn
Algorithm 623
genewise output
Score 448.55 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
SPP00000034_1.0 1 MNGPEDLPK---SYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTP
N E + YDYD ++IGGG GG+A+AKEAA +G KV++ D+V P
SNNHECKSQGECNYDYDYVVIGGGPGGMASAKEAASHGAKVLLFDYVKP
subseq(908011,5 2965 aaacgtatcggtatgtgtggagggcggagtgagggtcggagcctgtgac
gaaaagacagagaaaaaatttgggcggtcccaacccagcattttaatac
tcccatacgagctttcctgtcgacctagacgggagataagactctttga
SPP00000034_1.0 47 TPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQ-DSRNYGWKVEETV
+ GT+WG+GGTCVNVGC+PKKLMH A +G + DS YGW +
SNKGTKWGIGGTCVNVGCVPKKLMHYAGNMGSLFKMDSNPYGWSYNNLI
subseq(908011,5 3112 aaagaatgaggatgaggtgcaatactggaagactaagtactgtttaata
gaagcaggtggcgtatggtcaattaacgatggttatacacaggcaaatt
tcaacggaaacctgtcttgagaagtcaatgtctcggtttactgttctat
SPP00000034_1.0 95 KHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIK--
H+W +++ VQ+HI SLN+ Y LR KV Y N + H +
-HNWGKLVTTVQSHIRSLNFSYMTGLRSSKVKYMNGLASLKDEHTVSYY
subseq(908011,5 3259 catgacgaagctcactcatataagcattagataagtgacaggcagttt
aaggattcctacatgctatgatcgtgccataatagtcgtaaaactcaa
tcgggatcgtgatattattccgtatactgggcgcaactggtatgggtc
SPP00000034_1.0 142 ATNNKGKEKIYSAERFLIATGERPRYLG-IPGDKEYCISSDDLFSLPYC
+ KE++ +A+ +LIATG RP + G KE I+SDD+FS+
LKGDMSKEELVTAKYILIATGCRPSIPDDVEGAKELSITSDDIFSMKKD
subseq(908011,5 3403 caggataggtgagatacagagtacaacggggggagcaaatggattaaag
tagatcaaattccaatttccgggcgtcaatagcaatgtccaattctaaa
agacgtgaggtgcgctcctcgtaatcactgaaaaatctaacttttgggt
SPP00000034_1.0 190 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGE
PGKTL+VGASYVALECAGFL +G DVTV VRSI+LRGFD A K+
PGKTLIVGASYVALECAGFLNSLGYDVTVAVRSIVLRGFDSQCALKVKI
subseq(908011,5 3550 cgaacagggttggtgtggttattgtggagggatagtcgtgtctgcagaa
cgactttgccatctagcgttactgaatctctgctttggtacagctatat
aaatattattcttagtaatgcaaattcctaggctagagtttgtacgagt
SPP00000034_1.0 239 HMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTV
+MEE G+ F +P K+ ++E G V + + E+ ++TV
YMEEQGVLFKHGVLPKKLSKME----GEKISVLFNDGTTEL----FDTV
subseq(908011,5 3697 taggcggctacggccaattaag ggaatgctaggaagc tgag
ataaagtttaagttcaatcata gaatctttaagccat tact
cggaggtccatgttaggagagg aaaattccttactga ttct
SPP00000034_1.0 288 MLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDIL
+ A GR + L+ V +++N+ T KI + TN+ I+A+GD+
LYATGRKGDIDMLNLDQVKIQVNKNTNKIITNEVSCTNISNIFAVGDVA
subseq(908011,5 3820 ctgagaaggagacacgcgaacgaaaaaaaaaaggataaataatgggggg
taccggagatattataatatataaacaattcaatggcatcattctgatc
ccaaagaacccgctgtgcaaattatacattctgtccattgtctcggtga
SPP00000034_1.0 337 EDKVELTPVAIQAGRLLAQRLYAGSTVKCDYENVPTTVFTPLEYGACGL
D EL PVAI+AG +LA+RL+ S DY +PT+++TP+EYG CG
VDVPELAPVAIKAGEILARRLFNQSEEIMDYTFIPTSIYTPIEYGTCGY
subseq(908011,5 3967 gggcgtgcggaagggatgaattactggaagtatacatatacagtgatgt
tatcatcctctacgattcggttaacaattaacttccctacctaagcgga
ttttgaatatcagggtacggatcagaatgccacagatttaccgtattat
SPP00000034_1.0 386 SEEKAVEKFGEENIEVYHSYFWPLEWTIPSRD--------------NNK
SEEKA E FG N+EV+ F LE + R+ +
SEEKAYEIFGTSNVEVFLQEFNNLEISAVHREKHVRAQKDQYDTDVSST
subseq(908011,5 4114 tggagtgatgatagggtccgtaatgatggcagacgcgcagctgaggaaa
caaacaattgccatatttaataatatcctagaaatgcaaaaaacatggc
aaaggcattcactaagctagtctaaattgtgggttaaggtgttatgtcc
SPP00000034_1.0 421 CYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTI
C +K++C ++ RVVGFH +GPNAGE+TQG+A AL+ K D I
CLSKLVCLKNEDNRVVGFHYVGPNAGEITQGMALALRLKAKKSDFDKCI
subseq(908011,5 4261 tttacgttaaggacgggtctggcagggaacgagcgtacagaaagtgata
gtcattgtaaaaagttgtaatgcacgatcagtctctgtacaagataagt
cgcacttaatactggtttttgtttcaattgtgtccaaggtagctctacc
SPP00000034_1.0 470 GIHPVCAEVFTTLSVTKRSGASIL-QAGCUGX
GIHP AE F L++T+ SG S+ GC G
GIHPTDAESFMNLTITRSSGLSFAAKGGCGGG
subseq(908011,5 4408 gaccagggttaacaaacttgcttggaggtggg
gtaccacacttatctcgccgtctccagggggg
ctcccttgtcgccgcgaggagcttcggcccgc
//
Gene 1
Gene 2965 4503
Exon 2965 4503 phase 0
//
>subseq(908011,5472).[2965:4503].sp.tr
SNNHECKSQGECNYDYDYVVIGGGPGGMASAKEAASHGAKVLLFDYVKPSNKGTKWGIGG
TCVNVGCVPKKLMHYAGNMGSLFKMDSNPYGWSYNNLIHNWGKLVTTVQSHIRSLNFSYM
TGLRSSKVKYMNGLASLKDEHTVSYYLKGDMSKEELVTAKYILIATGCRPSIPDDVEGAK
ELSITSDDIFSMKKDPGKTLIVGASYVALECAGFLNSLGYDVTVAVRSIVLRGFDSQCAL
KVKIYMEEQGVLFKHGVLPKKLSKMEGEKISVLFNDGTTELFDTVLYATGRKGDIDMLNL
DQVKIQVNKNTNKIITNEVSCTNISNIFAVGDVAVDVPELAPVAIKAGEILARRLFNQSE
EIMDYTFIPTSIYTPIEYGTCGYSEEKAYEIFGTSNVEVFLQEFNNLEISAVHREKHVRA
QKDQYDTDVSSTCLSKLVCLKNEDNRVVGFHYVGPNAGEITQGMALALRLKAKKSDFDKC
IGIHPTDAESFMNLTITRSSGLSFAAKGGCGGG
//
>subseq(908011,5472).[2965:4503].sp
AGTAACAACCACGAATGTAAATCCCAGGGAGAGTGCAATTATGATTACGACTATGTGGTT
ATCGGGGGAGGCCCCGGTGGAATGGCATCCGCGAAGGAGGCAGCGTCACATGGAGCAAAG
GTACTCCTTTTCGATTATGTTAAGCCAAGTAACAAAGGAACCAAGTGGGGAATAGGAGGC
ACCTGTGTGAATGTCGGTTGTGTGCCAAAGAAATTAATGCATTACGCAGGAAATATGGGT
AGCCTTTTCAAGATGGATTCTAATCCATACGGTTGGTCTTATAACAATTTAATTCATAAC
TGGGGGAAGCTAGTTACCACGGTTCAGTCACATATACGTTCTCTAAATTTTAGCTACATG
ACTGGACTTAGATCCTCTAAGGTGAAGTACATGAACGGATTAGCCAGTCTGAAGGATGAA
CATACGGTGTCGTATTACCTAAAGGGAGACATGTCTAAGGAAGAGTTGGTTACGGCCAAG
TACATTCTCATCGCTACCGGGTGTAGACCAAGTATCCCAGACGATGTGGAAGGAGCAAAA
GAACTTAGCATTACATCAGACGATATTTTTTCTATGAAGAAGGATCCAGGAAAAACTCTA
ATTGTTGGAGCTTCTTACGTTGCTTTAGAGTGTGCAGGATTTTTGAACTCATTAGGATAT
GATGTCACCGTTGCAGTGAGGTCCATTGTATTGCGAGGGTTTGATTCTCAGTGTGCACTC
AAGGTAAAGATTTACATGGAGGAACAGGGGGTTCTCTTCAAACATGGGGTTCTTCCAAAG
AAGTTATCGAAAATGGAGGGAGAAAAAATATCTGTTCTCTTCAATGATGGAACCACTGAG
CTATTTGATACCGTTCTCTACGCAACAGGAAGGAAAGGAGACATCGACATGCTCAATCTG
GATCAGGTCAAAATACAAGTTAATAAAAATACAAACAAAATTATTACCAATGAGGTTAGC
TGCACAAATATTTCGAATATCTTTGCCGTGGGGGATGTGGCAGTTGATGTTCCTGAGTTA
GCACCTGTAGCTATCAAAGCGGGGGAGATTTTAGCCAGGAGGTTATTTAACCAATCGGAA
GAAATTATGGACTACACATTCATACCGACATCTATTTATACACCCATCGAGTATGGAACT
TGTGGATATTCAGAAGAAAAGGCGTACGAAATTTTTGGCACATCCAATGTAGAAGTGTTC
CTTCAAGAGTTTAACAATTTAGAAATATCTGCTGTGCATAGGGAGAAGCATGTTCGAGCA
CAGAAGGATCAGTATGATACAGATGTGAGTAGCACCTGCTTGTCCAAACTCGTTTGTTTA
AAAAATGAAGACAATCGGGTGGTTGGTTTTCATTATGTGGGTCCTAATGCCGGAGAAATT
ACTCAGGGTATGGCTCTCGCCTTAAGACTGAAGGCTAAAAAGAGCGATTTCGATAAATGC
ATCGGCATTCACCCCACCGATGCTGAGTCTTTCATGAACCTCACGATCACGCGATCGTCG
GGACTGTCCTTTGCTGCCAAGGGGGGCTGCGGCGGGGGC
//
TR2
genewise $Name: wise2-2-0 $ (unreleased release)
This program is freely distributed under a GPL. See source directory
Copyright (c) GRL limited: portions of the code are from separate copyright
Query protein: SPP00000035_1.0
Comp Matrix: blosum62.bla
Gap open: 12
Gap extension: 2
Start/End global
Target Sequence subseq(908014,5000)
Strand: forward
Start/End (protein) global
Gene Paras: human.gf
Codon Table: codon.table
Subs error: 1e-05
Indel error: 1e-05
Model splice? model
Model codon bias? flat
Model intron bias? tied
Null model syn
Algorithm 623
genewise output
Score 458.94 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
SPP00000035_1.0 1 MAAMAVALRGLGGRFRWRTQAVAGGVRGAARGAAAGQRDYDLLVVGGGS
+ G + T + DYD +V+GGG
PKYGHAQMEGKNALEKGGTHPNQSN-NHECKSQGECNYDYDYVVIGGGP
subseq(908014,5 2427 catgcgcaggaagtgaggaccacaa acgtatcggtatgtgtggagggc
caagacatagaactaaggcacaaga aaagacagagaaaaaatttgggc
aacatgggagacagggaatcttatc ccatacgagctttcctgtcgacc
SPP00000035_1.0 50 GGLACAKEAAQLGRKVAVVDYVEPSPQGTRWGLGGTCVNVGCIPKKLMH
GG+A AKEAA G KV + DYV+PS +GT+WG+GGTCVNVGC+PKKLMH
GGMASAKEAASHGAKVLLFDYVKPSNKGTKWGIGGTCVNVGCVPKKLMH
subseq(908014,5 2571 ggagtgagggtcggagcctgtgacaaagaatgaggatgaggtgcaatac
ggtcccaacccagcattttaatacgaagcaggtggcgtatggtcaatta
tagacgggagataagactctttgatcaacggaaacctgtcttgagaagt
SPP00000035_1.0 99 QAALLGGLIQ-DAPNYGWEVAQPVPHDWRKMAEAVQNHVKSLNWGHRVQ
A +G L++ D+ YGW + H+W K+ VQ+H++SLN+ +
YAGNMGSLFKMDSNPYGWSYNNLI-HNWGKLVTTVQSHIRSLNFSYMTG
subseq(908014,5 2718 tggaagactaagtactgtttaata catgacgaagctcactcatataag
acgatggttatacacaggcaaatt aaggattcctacatgctatgatcg
caatgtctcggtttactgttctat tcgggatcgtgatattattccgta
SPP00000035_1.0 147 LQDRKVKYFNIKASFVDEHTVCGVAKG--GKEILLSADHIIIATGGRPR
L+ KVKY+N AS+ DEHTV KG KE L++A +I+IATG RP
LRSSKVKYMNGLASLKDEHTVSYYLKGDMSKEELVTAKYILIATGCRPS
subseq(908014,5 2862 cattagataagtgacaggcagtttcaggataggtgagatacagagtaca
tgccataatagtcgtaaaactcaatagatcaaattccaatttccgggcg
tactgggcgcaactggtatgggtcagacgtgaggtgcgctcctcgtaat
SPP00000035_1.0 194 YPTHIEGALEYGITSDDIFWLKESPGKTLVVGASYVALECAGFLTGIGL
P +EGA E ITSDDIF +K+ PGKTL+VGASYVALECAGFL +G
IPDDVEGAKELSITSDDIFSMKKDPGKTLIVGASYVALECAGFLNSLGY
subseq(908014,5 3009 acggggggagcaaatggattaaagcgaacagggttggtgtggttattgt
tcaatagcaatgtccaattctaaacgactttgccatctagcgttactga
cactgaaaaatctaacttttgggtaaatattattcttagtaatgcaaat
SPP00000035_1.0 243 DTTIMMRSIPLRGFDQQMSSMVIEHMASHGTRFLRGCAPSRVRRLPDGQ
D T+ +RSI LRGFD Q + V +M G F G P ++ ++ +
DVTVAVRSIVLRGFDSQCALKVKIYMEEQGVLFKHGVLPKKLSKMEGEK
subseq(908014,5 3156 ggagggatagtcgtgtctgcagaataggcggctacggccaattaaggga
atctctgctttggtacagctatatataaagtttaagttcaatcatagaa
tcctaggctagagtttgtacgagtcggaggtccatgttaggagaggaaa
SPP00000035_1.0 292 LQVTWEDSTTGKEDTGTFDTVLWAIGRVPDTRSLNLEKAGVDTSPDTQK
+ V + D T T FDTVL+A GR D LNL++ + + +T K
ISVLFNDGT-----TELFDTVLYATGRKGDIDMLNLDQVKIQVNKNTNK
subseq(908014,5 3303 atgctagga agctgagctgagaaggagacacgcgaacgaaaaaa
tctttaagc cattacttaccggagatattataatatataaacaa
attccttac tgattctccaaagaacccgctgtgcaaattataca
SPP00000035_1.0 341 ILVDSREATSVPHIYAIGDVVEGRPELTPIAIMAGRLLVQRLFGGSSDL
I+ + T++ +I+A+GDV PEL P+AI AG +L +RLF S ++
IITNEVSCTNISNIFAVGDVAVDVPELAPVAIKAGEILARRLFNQSEEI
subseq(908014,5 3435 aaaaggataaataatgggggggggcgtgcggaagggatgaattactgga
ttcaatggcatcattctgatctatcatcctctacgattcggttaacaat
ttctgtccattgtctcggtgattttgaatatcagggtacggatcagaat
SPP00000035_1.0 390 MDYDNVPTTVFTPLEYGCVGLSEEEAVARHGQEHVEVYHAHYKPLEFTV
MDY +PT+++TP+EYG G SEE+A G +VEV+ + LE++
MDYTFIPTSIYTPIEYGTCGYSEEKAYEIFGTSNVEVFLQEFNNLEISA
subseq(908014,5 3582 agtatacatatacagtgatgttggagtgatgatagggtccgtaatgatg
taacttccctacctaagcggacaaacaattgccatatttaataatatcc
gccacagatttaccgtattataaaggcattcactaagctagtctaaatt
SPP00000035_1.0 439 AGRD--------------ASQCYVKMVCLREPPQLVLGLHFLGPNAGEV
R+ S C K+VCL+ V+G H++GPNAGE+
VHREKHVRAQKDQYDTDVSSTCLSKLVCLKNEDNRVVGFHYVGPNAGEI
subseq(908014,5 3729 gcagacgcgcagctgaggaaatttacgttaaggacgggtctggcaggga
tagaaatgcaaaaaacatggcgtcattgtaaaaagttgtaatgcacgat
gtgggttaaggtgttatgtcccgcacttaatactggtttttgtttcaat
SPP00000035_1.0 474 TQGFALGIKCGASYAQVMRTVGIHPTCSEEVVKLRISKRSGLD-PTVTG
TQG+AL ++ A + + +GIHPT +E + L I++ SGL G
TQGMALALRLKAKKSDFDKCIGIHPTDAESFMNLTITRSSGLSFAAKGG
subseq(908014,5 3876 acgagcgtacagaaagtgatagaccagggttaacaaacttgcttggagg
cagtctctgtacaagataagtgtaccacacttatctcgccgtctccagg
tgtgtccaaggtagctctaccctcccttgtcgccgcgaggagcttcggc
SPP00000035_1.0 522 CUGX
C G
CGGG
subseq(908014,5 4023 tggg
gggg
ccgc
//
Gene 1
Gene 2427 4034
Exon 2427 4034 phase 0
//
>subseq(908014,5000).[2427:4034].sp.tr
PKYGHAQMEGKNALEKGGTHPNQSNNHECKSQGECNYDYDYVVIGGGPGGMASAKEAASH
GAKVLLFDYVKPSNKGTKWGIGGTCVNVGCVPKKLMHYAGNMGSLFKMDSNPYGWSYNNL
IHNWGKLVTTVQSHIRSLNFSYMTGLRSSKVKYMNGLASLKDEHTVSYYLKGDMSKEELV
TAKYILIATGCRPSIPDDVEGAKELSITSDDIFSMKKDPGKTLIVGASYVALECAGFLNS
LGYDVTVAVRSIVLRGFDSQCALKVKIYMEEQGVLFKHGVLPKKLSKMEGEKISVLFNDG
TTELFDTVLYATGRKGDIDMLNLDQVKIQVNKNTNKIITNEVSCTNISNIFAVGDVAVDV
PELAPVAIKAGEILARRLFNQSEEIMDYTFIPTSIYTPIEYGTCGYSEEKAYEIFGTSNV
EVFLQEFNNLEISAVHREKHVRAQKDQYDTDVSSTCLSKLVCLKNEDNRVVGFHYVGPNA
GEITQGMALALRLKAKKSDFDKCIGIHPTDAESFMNLTITRSSGLSFAAKGGCGGG
//
>subseq(908014,5000).[2427:4034].sp
CCAAAATACGGACATGCGCAGATGGAAGGGAAAAACGCATTGGAGAAGGGAGGAACTCAC
CCTAATCAAAGTAACAACCACGAATGTAAATCCCAGGGAGAGTGCAATTATGATTACGAC
TATGTGGTTATCGGGGGAGGCCCCGGTGGAATGGCATCCGCGAAGGAGGCAGCGTCACAT
GGAGCAAAGGTACTCCTTTTCGATTATGTTAAGCCAAGTAACAAAGGAACCAAGTGGGGA
ATAGGAGGCACCTGTGTGAATGTCGGTTGTGTGCCAAAGAAATTAATGCATTACGCAGGA
AATATGGGTAGCCTTTTCAAGATGGATTCTAATCCATACGGTTGGTCTTATAACAATTTA
ATTCATAACTGGGGGAAGCTAGTTACCACGGTTCAGTCACATATACGTTCTCTAAATTTT
AGCTACATGACTGGACTTAGATCCTCTAAGGTGAAGTACATGAACGGATTAGCCAGTCTG
AAGGATGAACATACGGTGTCGTATTACCTAAAGGGAGACATGTCTAAGGAAGAGTTGGTT
ACGGCCAAGTACATTCTCATCGCTACCGGGTGTAGACCAAGTATCCCAGACGATGTGGAA
GGAGCAAAAGAACTTAGCATTACATCAGACGATATTTTTTCTATGAAGAAGGATCCAGGA
AAAACTCTAATTGTTGGAGCTTCTTACGTTGCTTTAGAGTGTGCAGGATTTTTGAACTCA
TTAGGATATGATGTCACCGTTGCAGTGAGGTCCATTGTATTGCGAGGGTTTGATTCTCAG
TGTGCACTCAAGGTAAAGATTTACATGGAGGAACAGGGGGTTCTCTTCAAACATGGGGTT
CTTCCAAAGAAGTTATCGAAAATGGAGGGAGAAAAAATATCTGTTCTCTTCAATGATGGA
ACCACTGAGCTATTTGATACCGTTCTCTACGCAACAGGAAGGAAAGGAGACATCGACATG
CTCAATCTGGATCAGGTCAAAATACAAGTTAATAAAAATACAAACAAAATTATTACCAAT
GAGGTTAGCTGCACAAATATTTCGAATATCTTTGCCGTGGGGGATGTGGCAGTTGATGTT
CCTGAGTTAGCACCTGTAGCTATCAAAGCGGGGGAGATTTTAGCCAGGAGGTTATTTAAC
CAATCGGAAGAAATTATGGACTACACATTCATACCGACATCTATTTATACACCCATCGAG
TATGGAACTTGTGGATATTCAGAAGAAAAGGCGTACGAAATTTTTGGCACATCCAATGTA
GAAGTGTTCCTTCAAGAGTTTAACAATTTAGAAATATCTGCTGTGCATAGGGAGAAGCAT
GTTCGAGCACAGAAGGATCAGTATGATACAGATGTGAGTAGCACCTGCTTGTCCAAACTC
GTTTGTTTAAAAAATGAAGACAATCGGGTGGTTGGTTTTCATTATGTGGGTCCTAATGCC
GGAGAAATTACTCAGGGTATGGCTCTCGCCTTAAGACTGAAGGCTAAAAAGAGCGATTTC
GATAAATGCATCGGCATTCACCCCACCGATGCTGAGTCTTTCATGAACCTCACGATCACG
CGATCGTCGGGACTGTCCTTTGCTGCCAAGGGGGGCTGCGGCGGGGGC
//
TR3
genewise $Name: wise2-2-0 $ (unreleased release)
This program is freely distributed under a GPL. See source directory
Copyright (c) GRL limited: portions of the code are from separate copyright
Query protein: SPP00000036_1.0
Comp Matrix: blosum62.bla
Gap open: 12
Gap extension: 2
Start/End global
Target Sequence subseq(908014,5481)
Strand: forward
Start/End (protein) global
Gene Paras: human.gf
Codon Table: codon.table
Subs error: 1e-05
Indel error: 1e-05
Model splice? model
Model codon bias? flat
Model intron bias? tied
Null model flat
Algorithm 623
genewise output
Score 495.80 bits over entire alignment
Scores as bits over a flat simple random model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
SPP00000036_1.0 1 MGHVHRLVSGKRRMHLTSRPVASTHSPLILDMCPHLNNGPMTGC
+ V ++ K +H + + H P +L + ++
LCSVFNFFFLKASAHAACVDASCVH-PWVLALPLFFKYSHRSST
subseq(908014,5 130 ctagtattttagagcggtgggttgc ctgcgtccttattcctta
tggttattttacgcaccgtaccgta cgttctctttaacagccc
ttctcttttagacgttatgttgtat aggcggctttgccccgct
SPP00000036_1.0 45 GRAGDPISHARGGVGGRGERLPR
G + R + ++
-:R[cga] GVCCTQYIELRRTPNTKEKEWCF
subseq(908014,5 259 CGGTGAGAA Intron 1 TAGAggttactagcccacaaagagttt
<2-----[261 : 960]-2> gtggcaatatggccacaaaaggt
tgttaatagtccatcaaagagtt
SPP00000036_1.0 68 GFARVVRVASEGSVRRPSGPVPAPQPPAFRFVSRPGRARSESETLERSP
F + A++ ++ + +S ++++++++ E+++
PFFFFFFFFFPLCIVLF---YLAKKRKKKKLISPLKKKKKKKKKEEEKK
subseq(908014,5 1031 ctttttttttcctagtt tcgaaaaaaatatctaaaaaaaaagggaa
ctttttttttctgtttt atcaagaaaattcctaaaaaaaaaaaaaa
ttttttttttctcatat tataaaaaaaaaccaaaaaaaaaaaaaaa
SPP00000036_1.0 117 PQSPGPGKAGDAPNRRSGHVRGARVL
Q+ K ++++ + +V+ A+ +
SQTVNGNKVAKGKTAKMPKVKMAHRK S:N[aac]
subseq(908014,5 1169 acagagaaggagaagaacagaagcaaAAGTTAAAA Intron 2
gactagaatcagaccatcatatcaga <2-----[1249 : 2654]
caagcgtagtacaggagaatagctgg
SPP00000036_1.0 143 PPGRRARLSSPGPSRSSEAREELRRHLVGLIERSRVVIFSKSYCP
R A L+ S + E +HL + + R+ + S +++
MNKRLASLAI------SSIKLEASQHL--FVREVRLFLHSSGFAR
subseq(908014,5 2652 CAGCaaaacgacga ttaacggtccc tgaggactccaagtgc
-2> taagtcgtct cctataccaat ttgatgtttagggtcg
gcggtccgca gccggaagatc tgagggttgtctatca
SPP00000036_1.0 189 HSTRVKELFSSL--GVECNVLELDQVDDGARVQEVLSEITNQKTVPNIF
S ++ ++L V+ ++ ++ Q L+E + + N
ASIPPRKIIEQLRHPVKSPRWHIESLQRRNFFQVFLKETMSNAKSENPK
subseq(908014,5 2767 gaacccaaagctaccgatcctcagtccaaattcgttagaaaagaagaca
cgtccgattaatgactaccggatactaggattatttaactgacagaaca
attataaccaaggtaaacatgttgccggatccaatgaaggtcagcgcaa
SPP00000036_1.0 236 VNKVHVGGCDQTFQA----YQSGLLQKLLQEDLAYDYDLIIIGGGSGGL
+ + + G + ++ QS + + Q + YDYD ++IGGG GG+
YGHAQMEGKNALEKGGTHPNQSNNHECKSQGECNYDYDYVVIGGGPGGM
subseq(908014,5 2914 tgcgcaggaagtgaggaccacaaacgtatcggtatgtgtggagggcgga
agacatagaactaaggcacaagaaaagacagagaaaaaatttgggcggt
catgggagacagggaatcttatcccatacgagctttcctgtcgacctag
SPP00000036_1.0 281 SCAKEAAILGKKVMVLDFVVPSPQGTSWGLGGTCVNVGCIPKKLMHQAA
+ AKEAA G KV+++D+V+PS +GT+WG+GGTCVNVGC+PKKLMH A+
ASAKEAASHGAKVLLFDYVKPSNKGTKWGIGGTCVNVGCVPKKLMHYAG
subseq(908014,5 3061 gtgagggtcggagcctgtgacaaagaatgaggatgaggtgcaatactgg
cccaacccagcattttaatacgaagcaggtggcgtatggtcaattaacg
acgggagataagactctttgatcaacggaaacctgtcttgagaagtcaa
SPP00000036_1.0 330 LLGQALC-DSRKFGWEYNQQVRHNWETMTKAIQNHISSLNWGYRLSLRE
+G + DS+ +GW YN+ + HNW ++ +Q HI SLN+ Y +LR
NMGSLFKMDSNPYGWSYNNLI-HNWGKLVTTVQSHIRSLNFSYMTGLRS
subseq(908014,5 3208 aagactaagtactgtttaata catgacgaagctcactcatataagcat
atggttatacacaggcaaatt aaggattcctacatgctatgatcgtgc
tgtctcggtttactgttctat tcgggatcgtgatattattccgtatac
SPP00000036_1.0 378 KAVAYVNSYGEFVEHHKIK--ATNKKGQETYYTAAQFVIATGERPRY-L
+V+Y+N+ + +++H + ++ +E TA+ +IATG RP
SKVKYMNGLASLKDEHTVSYYLKGDMSKEELVTAKYILIATGCRPSIPD
subseq(908014,5 3352 tagataagtgacaggcagtttcaggataggtgagatacagagtacaacg
cataatagtcgtaaaactcaatagatcaaattccaatttccgggcgtca
tgggcgcaactggtatgggtcagacgtgaggtgcgctcctcgtaatcac
SPP00000036_1.0 424 GIQGDKEYCITSDDLFSLPYCPGKTLVVGASYVALECAGFLAGFGLDVT
++G KE ITSDD+FS+++ PGKTL+VGASYVALECAGFL G DVT
DVEGAKELSITSDDIFSMKKDPGKTLIVGASYVALECAGFLNSLGYDVT
subseq(908014,5 3499 gggggagcaaatggattaaagcgaacagggttggtgtggttattgtgga
atagcaatgtccaattctaaacgactttgccatctagcgttactgaatc
tgaaaaatctaacttttgggtaaatattattcttagtaatgcaaattcc
SPP00000036_1.0 473 VMVRSILLRGFDQEMAEKVGSYMEQHGVKFLRKFIPVMVQQLEKGSPGK
V+VRSI+LRGFD + A KV YME+ GV F++ +P ++L K + K
VAVRSIVLRGFDSQCALKVKIYMEEQGVLFKHGVLP---KKLSKMEGEK
subseq(908014,5 3646 gggatagtcgtgtctgcagaataggcggctacggcc aattaaggga
tctgctttggtacagctatatataaagtttaagttc aatcatagaa
taggctagagtttgtacgagtcggaggtccatgtta ggagaggaaa
SPP00000036_1.0 522 LKVLAKSTEGTETIEGVYNTVLLAIGRDSCTRKIGLEKIGVKINEKSGK
+ VL +GT + ++TVL A GR++ + L+++ +++N+++ K
ISVLF--NDGTTEL---FDTVLYATGRKGDIDMLNLDQVKIQVNKNTNK
subseq(908014,5 3784 atgct aggaagc tgagctgagaaggagacacgcgaacgaaaaaa
tcttt aagccat tacttaccggagatattataatatataaacaa
attcc ttactga ttctccaaagaacccgctgtgcaaattataca
SPP00000036_1.0 571 IPVNDVEQTNVPYVYAVGDILEDKPELTPVAIQSGKLLAQRLFGASLEK
I N+V TN+ ++AVGD+ D PEL+PVAI++G++LA RLF S E
IITNEVSCTNISNIFAVGDVAVDVPELAPVAIKAGEILARRLFNQSEEI
subseq(908014,5 3916 aaaaggataaataatgggggggggcgtgcggaagggatgaattactgga
ttcaatggcatcattctgatctatcatcctctacgattcggttaacaat
ttctgtccattgtctcggtgattttgaatatcagggtacggatcagaat
SPP00000036_1.0 620 CDYINVPTTVFTPLEYGCCGLSEEKAIEVYKKENLEIYHTLFWPLEWTV
DY +PT ++TP+EYG CG SEEKA E++ N+E++ F LE +
MDYTFIPTSIYTPIEYGTCGYSEEKAYEIFGTSNVEVFLQEFNNLEISA
subseq(908014,5 4063 agtatacatatacagtgatgttggagtgatgatagggtccgtaatgatg
taacttccctacctaagcggacaaacaattgccatatttaataatatcc
gccacagatttaccgtattataaaggcattcactaagctagtctaaatt
SPP00000036_1.0 669 AGRENN--------------TCYAKIICNKFDHDRVIGFHILGPNAGEV
RE++ TC K++C K + +RV+GFH +GPNAGE+
VHREKHVRAQKDQYDTDVSSTCLSKLVCLKNEDNRVVGFHYVGPNAGEI
subseq(908014,5 4210 gcagacgcgcagctgaggaaatttacgttaaggacgggtctggcaggga
tagaaatgcaaaaaacatggcgtcattgtaaaaagttgtaatgcacgat
gtgggttaaggtgttatgtcccgcacttaatactggtttttgtttcaat
SPP00000036_1.0 704 TQGFAAAMKCGLTKQLLDDTIGIHPTCGEVFTTLEITKSSGLDITQKG-
TQG A A+ +K +D+ IGIHPT +E F +L IT SSGL ++ KG
TQGMALALRLKAKKSDFDKCIGIHPTDAESFMNLTITRSSGLSFAAKGG
subseq(908014,5 4357 acgagcgtacagaaagtgatagaccagggttaacaaacttgcttggagg
cagtctctgtacaagataagtgtaccacacttatctcgccgtctccagg
tgtgtccaaggtagctctaccctcccttgtcgccgcgaggagcttcggc
SPP00000036_1.0 752 CUG
C+G
CGG
subseq(908014,5 4504 tgg
ggg
ccg
//
Gene 1
Gene 130 4512
Exon 130 260 phase 0
Exon 961 1248 phase 2
Exon 2655 4512 phase 2
//
>subseq(908014,5481).[130:4512].sp.tr
LCSVFNFFFLKASAHAACVDASCVHPWVLALPLFFKYSHRSSTRGVCCTQYIELRRTPNT
KEKEWCFPFFFFFFFFFPLCIVLFYLAKKRKKKKLISPLKKKKKKKKKEEEKKSQTVNGN
KVAKGKTAKMPKVKMAHRKNMNKRLASLAISSIKLEASQHLFVREVRLFLHSSGFARASI
PPRKIIEQLRHPVKSPRWHIESLQRRNFFQVFLKETMSNAKSENPKYGHAQMEGKNALEK
GGTHPNQSNNHECKSQGECNYDYDYVVIGGGPGGMASAKEAASHGAKVLLFDYVKPSNKG
TKWGIGGTCVNVGCVPKKLMHYAGNMGSLFKMDSNPYGWSYNNLIHNWGKLVTTVQSHIR
SLNFSYMTGLRSSKVKYMNGLASLKDEHTVSYYLKGDMSKEELVTAKYILIATGCRPSIP
DDVEGAKELSITSDDIFSMKKDPGKTLIVGASYVALECAGFLNSLGYDVTVAVRSIVLRG
FDSQCALKVKIYMEEQGVLFKHGVLPKKLSKMEGEKISVLFNDGTTELFDTVLYATGRKG
DIDMLNLDQVKIQVNKNTNKIITNEVSCTNISNIFAVGDVAVDVPELAPVAIKAGEILAR
RLFNQSEEIMDYTFIPTSIYTPIEYGTCGYSEEKAYEIFGTSNVEVFLQEFNNLEISAVH
REKHVRAQKDQYDTDVSSTCLSKLVCLKNEDNRVVGFHYVGPNAGEITQGMALALRLKAK
KSDFDKCIGIHPTDAESFMNLTITRSSGLSFAAKGGCGG
//
>subseq(908014,5481).[130:4512].sp
CTTTGTAGCGTTTTCAATTTTTTTTTTTTAAAGGCAAGCGCGCATGCTGCATGTGTGGAT
GCTTCGTGTGTACATCCATGGGTGCTCGCGTTGCCCCTTTTTTTTAAGTACTCCCACCGC
TCGTCCACTCGAGGTGTGTGTTGTACACAATATATAGAGCTTCGCCGCACACCTAACACA
AAAGAAAAGGAATGGTGTTTTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCCTTTGC
ATAGTTTTATTTTATCTAGCTAAAAAAAGAAAAAAAAAAAAATTAATATCCCCCTTAAAA
AAAAAAAAAAAAAAAAAAAAAAAAGAAGAAGAAAAAAAAAGCCAAACAGTGAACGGGAAT
AAAGTGGCTAAAGGCAAAACGGCGAAAATGCCAAAAGTTAAAATGGCCCATAGGAAGAAC
ATGAACAAGAGGCTTGCCAGCCTGGCCATATCGTCCATCAAGCTGGAAGCATCGCAACAT
CTCTTTGTGAGAGAGGTGAGGCTTTTTCTGCATAGCAGTGGATTTGCCCGAGCAAGTATT
CCACCTCGAAAAATCATCGAACAATTGAGGCATCCAGTAAAATCCCCACGTTGGCATATT
GAGTCCCTCCAGAGGAGAAATTTCTTCCAAGTATTTTTGAAAGAAACGATGAGTAACGCA
AAGAGCGAGAACCCAAAATACGGACATGCGCAGATGGAAGGGAAAAACGCATTGGAGAAG
GGAGGAACTCACCCTAATCAAAGTAACAACCACGAATGTAAATCCCAGGGAGAGTGCAAT
TATGATTACGACTATGTGGTTATCGGGGGAGGCCCCGGTGGAATGGCATCCGCGAAGGAG
GCAGCGTCACATGGAGCAAAGGTACTCCTTTTCGATTATGTTAAGCCAAGTAACAAAGGA
ACCAAGTGGGGAATAGGAGGCACCTGTGTGAATGTCGGTTGTGTGCCAAAGAAATTAATG
CATTACGCAGGAAATATGGGTAGCCTTTTCAAGATGGATTCTAATCCATACGGTTGGTCT
TATAACAATTTAATTCATAACTGGGGGAAGCTAGTTACCACGGTTCAGTCACATATACGT
TCTCTAAATTTTAGCTACATGACTGGACTTAGATCCTCTAAGGTGAAGTACATGAACGGA
TTAGCCAGTCTGAAGGATGAACATACGGTGTCGTATTACCTAAAGGGAGACATGTCTAAG
GAAGAGTTGGTTACGGCCAAGTACATTCTCATCGCTACCGGGTGTAGACCAAGTATCCCA
GACGATGTGGAAGGAGCAAAAGAACTTAGCATTACATCAGACGATATTTTTTCTATGAAG
AAGGATCCAGGAAAAACTCTAATTGTTGGAGCTTCTTACGTTGCTTTAGAGTGTGCAGGA
TTTTTGAACTCATTAGGATATGATGTCACCGTTGCAGTGAGGTCCATTGTATTGCGAGGG
TTTGATTCTCAGTGTGCACTCAAGGTAAAGATTTACATGGAGGAACAGGGGGTTCTCTTC
AAACATGGGGTTCTTCCAAAGAAGTTATCGAAAATGGAGGGAGAAAAAATATCTGTTCTC
TTCAATGATGGAACCACTGAGCTATTTGATACCGTTCTCTACGCAACAGGAAGGAAAGGA
GACATCGACATGCTCAATCTGGATCAGGTCAAAATACAAGTTAATAAAAATACAAACAAA
ATTATTACCAATGAGGTTAGCTGCACAAATATTTCGAATATCTTTGCCGTGGGGGATGTG
GCAGTTGATGTTCCTGAGTTAGCACCTGTAGCTATCAAAGCGGGGGAGATTTTAGCCAGG
AGGTTATTTAACCAATCGGAAGAAATTATGGACTACACATTCATACCGACATCTATTTAT
ACACCCATCGAGTATGGAACTTGTGGATATTCAGAAGAAAAGGCGTACGAAATTTTTGGC
ACATCCAATGTAGAAGTGTTCCTTCAAGAGTTTAACAATTTAGAAATATCTGCTGTGCAT
AGGGAGAAGCATGTTCGAGCACAGAAGGATCAGTATGATACAGATGTGAGTAGCACCTGC
TTGTCCAAACTCGTTTGTTTAAAAAATGAAGACAATCGGGTGGTTGGTTTTCATTATGTG
GGTCCTAATGCCGGAGAAATTACTCAGGGTATGGCTCTCGCCTTAAGACTGAAGGCTAAA
AAGAGCGATTTCGATAAATGCATCGGCATTCACCCCACCGATGCTGAGTCTTTCATGAAC
CTCACGATCACGCGATCGTCGGGACTGTCCTTTGCTGCCAAGGGGGGCTGCGGCGGG
//
