TR1
# TBLASTN 2.2.17 [Aug-26-2007]
# Query: SPP00000034_1.0 # Protein # Thioredoxin reductase 1 (TR1) # Homo sapiens # Complete
# Database: genoma_PlasmoDB.fa
# Fields: Query id, Subject id, % identity, alignment length, mismatches, gap openings, q. start, q. end, s. start, s. end, e-value, bit score
SPP00000034_1.0 Plasmodium_knowlesi_strain_H|PK4.chr07|2007-02-22|ds-DNA|Plasmodium_knowlesi_Sanger 44.53 503 258 8 10 491 910483 909011 4e-109 391
SPP00000034_1.0 Plasmodium_knowlesi_strain_H|PK4.chr13|2007-02-22|ds-DNA|Plasmodium_knowlesi_Sanger 28.78 476 278 13 68 482 1354351 1355736 4e-47 186
SPP00000034_1.0 Plasmodium_knowlesi_strain_H|chr14|2007-02-22|ds-DNA|Plasmodium_knowlesi_Sanger 26.24 465 308 17 55 484 2225083 2226417 8e-18 88.6
SPP00000034_1.0 Plasmodium_knowlesi_strain_H|PK4.chr05|2007-02-22|ds-DNA|Plasmodium_knowlesi_Sanger 23.31 519 311 15 50 481 762593 761064 2e-13 73.9
TBLASTN 2.2.17 [Aug-26-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SPP00000034_1.0 # Protein # Thioredoxin reductase 1 (TR1) #
Homo sapiens # Complete
(499 letters)
Database: genoma_PlasmoDB.fa
14 sequences; 23,462,190 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Plasmodium_knowlesi_strain_H|PK4.chr07|2007-02-22|ds-DNA|Plasmod... 391 e-109
Plasmodium_knowlesi_strain_H|PK4.chr13|2007-02-22|ds-DNA|Plasmod... 186 4e-47
Plasmodium_knowlesi_strain_H|chr14|2007-02-22|ds-DNA|Plasmodium_... 89 8e-18
Plasmodium_knowlesi_strain_H|PK4.chr05|2007-02-22|ds-DNA|Plasmod... 74 2e-13
>Plasmodium_knowlesi_strain_H|PK4.chr07|2007-02-22|ds-
DNA|Plasmodium_knowlesi_Sanger
Length = 1496036
Score = 391 bits (1005), Expect = e-109, Method: Composition-based stats.
Identities = 211/503 (41%), Positives = 293/503 (58%), Gaps = 21/503 (4%)
Frame = -2
Query: 10 SYDYDLIIIXXXXXXXXXXXXXXXXXXXVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKL 69
+YDYD ++I V++ D+V P+ GT+WG+GGTCVNVGC+PKKL
Sbjct: 910483 NYDYDYVVIGGGPGGMASAKEAASHGAKVLLFDYVKPSNKGTKWGIGGTCVNVGCVPKKL 910304
Query: 70 MHQAALLGQALQ-DSRNYGWKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYE 128
MH A +G + DS YGW + H+W +++ VQ+HI SLN+ Y LR KV Y
Sbjct: 910303 MHYAGNMGSLFKMDSNPYGWSYNNLI-HNWGKLVTTVQSHIRSLNFSYMTGLRSSKVKYM 910127
Query: 129 NAYGQFIGPHRIK--ATNNKGKEKIYSAERFLIATGERPRYLGIPGD----KEYCISSDD 182
N H + + KE++ +A+ LIATG RP IP D KE I+SDD
Sbjct: 910126 NGLASLKDEHTVSYYLKGDMSKEELVTAKYILIATGCRP---SIPDDVEGAKELSITSDD 909956
Query: 183 LFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEE 242
+FS+ PGKTL+VGASYVALECAGFL +G DVTV VRSI+LRGFD A K+ +MEE
Sbjct: 909955 IFSMKKDPGKTLIVGASYVALECAGFLNSLGYDVTVAVRSIVLRGFDSQCALKVKIYMEE 909776
Query: 243 HGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGL 302
G+ F +P K+ ++E ++ V+ +E ++TV+ A GR + L
Sbjct: 909775 QGVLFKHGVLPKKLSKMEGE---KISVLFNDGTTEL-----FDTVLYATGRKGDIDMLNL 909620
Query: 303 ETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGST 362
+ V +++N+ T KI + TN+ I+A+GD+ D EL PVAI+AG +LA+RL+ S
Sbjct: 909619 DQVKIQVNKNTNKIITNEVSCTNISNIFAVGDVAVDVPELAPVAIKAGEILARRLFNQSE 909440
Query: 363 VKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWPLEWTIPSRD----- 417
DY +PT+++TP+EYG CG SEEKA E FG N+EV+ F LE + R+
Sbjct: 909439 EIMDYTFIPTSIYTPIEYGTCGYSEEKAYEIFGTSNVEVFLQEFNNLEISAVHREKHVRA 909260
Query: 418 ---------NNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDST 468
++ C +K++C ++ RVVGFH +GPNAGE+TQG A AL+ K D
Sbjct: 909259 QKDQYDTDVSSTCLSKLVCLKNEDNRVVGFHYVGPNAGEITQGMALALRLKAKKSDFDKC 909080
Query: 469 IGIHPVCAEVFTTLSVTKRSGAS 491
IGIHP AE F L++T+ SG S
Sbjct: 909079 IGIHPTDAESFMNLTITRSSGLS 909011
>Plasmodium_knowlesi_strain_H|PK4.chr13|2007-02-22|ds-
DNA|Plasmodium_knowlesi_Sanger
Length = 2200295
Score = 186 bits (471), Expect = 4e-47, Method: Composition-based stats.
Identities = 137/476 (28%), Positives = 225/476 (47%), Gaps = 61/476 (12%)
Frame = +1
Query: 68 KLMHQAALLGQALQDSRNYGWKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVY 127
++M AA + L++SR+YG+ + + ++E +I LN YR L++ V Y
Sbjct: 1354351 QIMFNAASIHDILENSRHYGFDTQ--FSFNLPLLVERRDKYIRRLNDIYRQNLKKDNVEY 1354524
Query: 128 ENAYGQFIGPHR--IKATNNKGKE----------------------KIYSAERFLIATGE 163
+ ++ IK +G ++ + LIA G
Sbjct: 1354525 FEGKASLLSENKVLIKKVKQQGHHYDDQEDDEEHYYEEDDEGDDEGQVIEGKNILIAVGN 1354704
Query: 164 RPRYLGIPGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVR-S 222
+P + + G E ISSDD F + + +VG+ Y+A+E + +G++ + R +
Sbjct: 1354705 KPIFPNVKG-IENTISSDDFFKIKEAK-RIGIVGSGYIAVELINVVKRLGMESYIFARGN 1354878
Query: 223 ILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEG 282
LLR FD+ + N++ M+++ I I VE+IE L + E
Sbjct: 1354879 RLLRKFDETIINELENDMKKNNINIITH---ANVEEIEKVKEKNLTIYLSDGRKYE---- 1355037
Query: 283 EYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDI------- 335
++ V+ +GR T + L+ + +K + I V D ++TNV +IYA+GD
Sbjct: 1355038 HFDYVIYCVGRSPNTEDLNLQALNIKTEKNY--IIVDDNQRTNVKHIYAVGDCCMVKKKQ 1355211
Query: 336 -LED-------------------------KVELTPVAIQAGRLLAQRLYAGSTVKCDYEN 369
+ED V+LTPVAI AGRLLA RL+ + +Y+
Sbjct: 1355212 EIEDLNLLKLYNEEVYLKKKENTSGDQYYNVQLTPVAINAGRLLADRLFLKRSRITNYKL 1355391
Query: 370 VPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWPLEWTIPSRD---NNKCYAKII 426
+P+ +F+ G G SE++A++ +G+EN+++Y S F L +++ D K Y K++
Sbjct: 1355392 IPSVIFSHPPIGTIGYSEQEAIDIYGKENVKIYESRFTNLFFSVYDMDPAQKEKTYLKLV 1355571
Query: 427 CNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAEVFTTL 482
C K+ E + G H++G NA E+ QGFA ALK TKK D TI IHP AE F T+
Sbjct: 1355572 CVGKE-ELIKGLHIVGLNADEIVQGFAVALKMNATKKDFDETIPIHPTAAEEFVTM 1355736
>Plasmodium_knowlesi_strain_H|chr14|2007-02-22|ds-
DNA|Plasmodium_knowlesi_Sanger
Length = 3159096
Score = 88.6 bits (218), Expect = 8e-18, Method: Composition-based stats.
Identities = 122/465 (26%), Positives = 214/465 (46%), Gaps = 35/465 (7%)
Frame = +1
Query: 55 LGGTCVNVGCIPKK-LMHQAALLGQALQDSRNYGWKVEETVKHDWDRMIEAVQNHIGSLN 113
LGGTC+N GCIP K L+H A +A + G V+ V+ D + + + +G+L
Sbjct: 2225083 LGGTCLNRGCIPSKSLLHIAHNYYEAKNKFKQMGIIVD-NVQLDVETLHKHKNKCMGNLA 2225259
Query: 114 WGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIP-- 171
G ++ KV + +G + + + N++GKEK+ +AER +IATG +P + IP
Sbjct: 2225260 DGITYLYKKNKVNHIIGHGSIVDGNSV-LVNSEGKEKLVTAERIVIATGSKP--IEIPLK 2225430
Query: 172 ------------------GDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIG 213
D + +SDD+ + P K ++G + LE A +G
Sbjct: 2225431 KLNDDNVKEAETVVDLLQYDHQMIQTSDDILNFKKIPKKISIIGGGVIGLEIGSVFAKMG 2225610
Query: 214 LDVTVMVRSILLRGF-DQDMANKIGEHMEEHGIKFIRQFVPI--KVEQIEAGTPGRLRVV 270
+V + + L F D D++ + + +E+ IKF I VE +A +
Sbjct: 2225611 SEVIIFEYNNRLCSFLDADVSRVLQKTLEKIKIKFAFNTSVIGGNVENEQA------TIF 2225772
Query: 271 AQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNV---P 327
AQ+T ++EI + + V++ +GR + L+ V +++ K KI V +E V P
Sbjct: 2225773 AQNTKTKEIQKVTSDVVLVCVGRRPNFDNLNLDKVNIELG-KNKKIQV--DESFGVISHP 2225943
Query: 328 YIYAIGDILEDKVELTPVAIQAGRLLAQ------RLYAGSTVKCDYENVPTTVFTPLEYG 381
I AIGD + D L A + G +LA +L +Y+ VP+ ++T E
Sbjct: 2225944 TIKAIGDAI-DGPMLAHKAEEEGYILANILLSELKLNKPKKSHINYDLVPSVIYTHPEVA 2226120
Query: 382 ACGLSEEKAVEKFGEENIEVYHSYFWPLEWTIPSR--DNNKCYAKIICNTKDNERVVGFH 439
+ GL+EEK + N+ + + +P SR D+ K++ + N +++G
Sbjct: 2226121 SVGLNEEKC----KQMNLS-FKAVTFPFAANSRSRTIDDFDGLIKLLVENETN-KILGSQ 2226282
Query: 440 VLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAEVFTTLSV 484
++G NA ++ + + G + K L I HP +EV +++
Sbjct: 2226283 IVGNNASDLILPLSIYVGSGGSSKSLSKIIYAHPTFSEVIKEVAL 2226417
>Plasmodium_knowlesi_strain_H|PK4.chr05|2007-02-22|ds-
DNA|Plasmodium_knowlesi_Sanger
Length = 1324984
Score = 73.9 bits (180), Expect = 2e-13, Method: Composition-based stats.
Identities = 121/519 (23%), Positives = 200/519 (38%), Gaps = 87/519 (16%)
Frame = -3
Query: 50 GTRWGLGGTCVNVGCIPKKLMHQA---------------------ALLGQALQDSRNYGW 88
G + +GGTCVNVGCIP K + A A +D
Sbjct: 762593 GDKDSIGGTCVNVGCIPSKSLLYATGKYRELKNLAKLYTYGIYTNAFRKSGKEDPVERNQ 762414
Query: 89 KVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKK---------VVYENAYGQFIGPHR 139
+ +TV+ D ++ E Q+ I L G L++KK V+YE G + +
Sbjct: 762413 LLADTVQIDIGKLKEYTQSVINKLKGGIENGLKKKKFCKNSEHVQVIYER--GHIVEKNI 762240
Query: 140 IKATNNKGKEKIYSAERFLIATGERPRYL-GIPGDKEYCISSDDLFSLPYCPGKTLVVGA 198
IK + GKE Y + +IATG P I D++ +SD L +VG
Sbjct: 762239 IKGEKS-GKE--YQVKNIIIATGSTPNIPDNIEVDEKTVFTSDQAVKLEGLQKYMGIVGM 762069
Query: 199 SYVALECAGFLAGIGLDVTVMVRS-ILLRGFDQDMANKIGEHMEEHGIKF--IRQFVPIK 255
+ +E +G +V S LL D D+A + E IK +R +
Sbjct: 762068 GIIGIEFTDIYTALGSEVVSFDYSPQLLPLLDADVAT----YFERVFIKSKPMRVHLNTC 761901
Query: 256 VEQIEAGTPGRLRVVAQS--TNSEE---------IIEGEYNTVMLAIGRDACTRKIGLET 304
+E + AG + ++ S ++EE I E ++ ++A GR T +GL+
Sbjct: 761900 IEYVRAGKGNQPVIIGHSERNDAEEDKPIQRNNKIKETRVDSCLVATGRKPNTNNMGLDD 761721
Query: 305 VGVKINEKTGKIP----VTDEEQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAG 360
+ +++N + V ++Q I+ IGD ++ + QA +++ + G
Sbjct: 761720 LQIQMNRGFVSVDEHLRVERKDQGVYDNIFCIGDANGKQMLAHTASHQALKVVDWIISNG 761541
Query: 361 STVKCD-----------------YENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYH 403
+ Y N+P+ +T E GL+E++A + + ENI
Sbjct: 761540 KETHNNTVHSIASHNDWASKPIIYRNIPSVCYTTPELAFVGLTEKEAKKLYPPENIGTEI 761361
Query: 404 SYFWP--------LEWTIPSRDNNKCYAKIICNTKDN-------------ERVVGFHVLG 442
S++ + T P R N Y K NT DN + ++G ++G
Sbjct: 761360 SFYKANSKVLCENNDITFPERSKNNSYNKGKYNTVDNTSGMVKIVYLKESKEILGLFIVG 761181
Query: 443 PNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAEVFTT 481
A + AL L+ L + HP +EV T
Sbjct: 761180 SYASILIHEGVLALNLKLSVIDLAHMVHSHPTISEVLDT 761064
Database: genoma_PlasmoDB.fa
Posted date: Feb 22, 2008 12:03 PM
Number of letters in database: 23,462,190
Number of sequences in database: 14
Lambda K H
0.319 0.138 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 14
Number of Hits to DB: 13,163,377
Number of extensions: 199090
Number of successful extensions: 745
Number of sequences better than 1.0e-02: 4
Number of HSP's gapped: 736
Number of HSP's successfully gapped: 5
Length of query: 499
Length of database: 7,820,730
Length adjustment: 102
Effective length of query: 397
Effective length of database: 7,819,302
Effective search space: 3104262894
Effective search space used: 3104262894
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)
TR2
# TBLASTN 2.2.17 [Aug-26-2007]
# Query: SPP00000035_1.0 # Protein # Thioredoxin reductase 2 (TR2) # Homo sapiens # Complete
# Database: genoma_PlasmoDB.fa
# Fields: Query id, Subject id, % identity, alignment length, mismatches, gap openings, q. start, q. end, s. start, s. end, e-value, bit score
SPP00000035_1.0 Plasmodium_knowlesi_strain_H|PK4.chr07|2007-02-22|ds-DNA|Plasmodium_knowlesi_Sanger 45.75 494 251 5 39 515 910477 909014 3e-120 429
SPP00000035_1.0 Plasmodium_knowlesi_strain_H|PK4.chr13|2007-02-22|ds-DNA|Plasmodium_knowlesi_Sanger 27.85 474 281 13 95 507 1354351 1355736 2e-47 186
SPP00000035_1.0 Plasmodium_knowlesi_strain_H|chr14|2007-02-22|ds-DNA|Plasmodium_knowlesi_Sanger 26.37 455 303 15 82 504 2225083 2226402 6e-14 75.9
SPP00000035_1.0 Plasmodium_knowlesi_strain_H|PK4.chr05|2007-02-22|ds-DNA|Plasmodium_knowlesi_Sanger 22.88 542 326 17 53 502 762644 761076 7e-11 65.5
TBLASTN 2.2.17 [Aug-26-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SPP00000035_1.0 # Protein # Thioredoxin reductase 2 (TR2) #
Homo sapiens # Complete
(524 letters)
Database: genoma_PlasmoDB.fa
14 sequences; 23,462,190 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Plasmodium_knowlesi_strain_H|PK4.chr07|2007-02-22|ds-DNA|Plasmod... 429 e-120
Plasmodium_knowlesi_strain_H|PK4.chr13|2007-02-22|ds-DNA|Plasmod... 186 2e-47
Plasmodium_knowlesi_strain_H|chr14|2007-02-22|ds-DNA|Plasmodium_... 76 6e-14
Plasmodium_knowlesi_strain_H|PK4.chr05|2007-02-22|ds-DNA|Plasmod... 65 7e-11
>Plasmodium_knowlesi_strain_H|PK4.chr07|2007-02-22|ds-
DNA|Plasmodium_knowlesi_Sanger
Length = 1496036
Score = 429 bits (1102), Expect = e-120, Method: Composition-based stats.
Identities = 220/494 (44%), Positives = 303/494 (61%), Gaps = 17/494 (3%)
Frame = -2
Query: 39 DYDXXXXXXXXXXXACAKEAAQLGRKVAVVDYVEPSPQGTRWGLGGTCVNVGCIPKKLMH 98
DYD A AKEAA G KV + DYV+PS +GT+WG+GGTCVNVGC+PKKLMH
Sbjct: 910477 DYDYVVIGGGPGGMASAKEAASHGAKVLLFDYVKPSNKGTKWGIGGTCVNVGCVPKKLMH 910298
Query: 99 QAALLGGLIQ-DAPNYGWEVAQPVPHDWRKMAEAVQNHVKSLNWGHRVQLQDRKVKYFNI 157
A +G L + D+ YGW + H+W K+ VQ+H++SLN+ + L+ KVKY N
Sbjct: 910297 YAGNMGSLFKMDSNPYGWSYNNLI-HNWGKLVTTVQSHIRSLNFSYMTGLRSSKVKYMNG 910121
Query: 158 KASFVDEHTVCGVAKG--GKEILLSADHIIIATGGRPRYPTHIEGALEYGITSDDIFWLK 215
AS DEHTV KG KE L++A +I+IATG RP P +EGA E ITSDDIF +K
Sbjct: 910120 LASLKDEHTVSYYLKGDMSKEELVTAKYILIATGCRPSIPDDVEGAKELSITSDDIFSMK 909941
Query: 216 ESPGKTLVVGASYVALECAGFLTGIGLDTTIMMRSIPLRGFDQQMSSMVIEHMASHGTRF 275
+ PGKTL+VGASYVALECAGFL +G D T+ +RSI LRGFD Q + V +M G F
Sbjct: 909940 KDPGKTLIVGASYVALECAGFLNSLGYDVTVAVRSIVLRGFDSQCALKVKIYMEEQGVLF 909761
Query: 276 LRGCAPSRVRRLPDGQLQVTWEDSTTGKEDTGTFDTVLWAIGRVPDTRSLNLEKAGVDTS 335
G P ++ ++ ++ V + D T T FDTVL+A GR D LNL++ + +
Sbjct: 909760 KHGVLPKKLSKMEGEKISVLFNDGT-----TELFDTVLYATGRKGDIDMLNLDQVKIQVN 909596
Query: 336 PDTQKILVDSREATSVPHIYAIGDVVEGRPELTPIAIMAGRLLVQRLFGGSSDLMDYDNV 395
+T KI+ + T++ +I+A+GDV PEL P+AI AG +L +RLF S ++MDY +
Sbjct: 909595 KNTNKIITNEVSCTNISNIFAVGDVAVDVPELAPVAIKAGEILARRLFNQSEEIMDYTFI 909416
Query: 396 PTTVFTPLEYGCVGLSEEEAVARHGQEHVEVYHAHYKPLEFTVAGRD------------- 442
PT+++TP+EYG G SEE+A G +VEV+ + LE + R+
Sbjct: 909415 PTSIYTPIEYGTCGYSEEKAYEIFGTSNVEVFLQEFNNLEISAVHREKHVRAQKDQYDTD 909236
Query: 443 -ASQCYVKMVCLREPPQLVLGLHFLGPNAGEVTQGFALGIKCGASYAQVMRTVGIHPTCS 501
+S C K+VCL+ V+G H++GPNAGE+TQG AL ++ A + + +GIHPT +
Sbjct: 909235 VSSTCLSKLVCLKNEDNRVVGFHYVGPNAGEITQGMALALRLKAKKSDFDKCIGIHPTDA 909056
Query: 502 EEVVKLRISKRSGL 515
E + L I++ SGL
Sbjct: 909055 ESFMNLTITRSSGL 909014
>Plasmodium_knowlesi_strain_H|PK4.chr13|2007-02-22|ds-
DNA|Plasmodium_knowlesi_Sanger
Length = 2200295
Score = 186 bits (473), Expect = 2e-47, Method: Composition-based stats.
Identities = 132/474 (27%), Positives = 237/474 (50%), Gaps = 61/474 (12%)
Frame = +1
Query: 95 KLMHQAALLGGLIQDAPNYGWEVAQPVPHDWRKMAEAVQNHVKSLNWGHRVQLQDRKVKY 154
++M AA + +++++ +YG++ + + E +++ LN +R L+ V+Y
Sbjct: 1354351 QIMFNAASIHDILENSRHYGFDTQ--FSFNLPLLVERRDKYIRRLNDIYRQNLKKDNVEY 1354524
Query: 155 FNIKASFVDEHTVC--GVAKGGKEI----------------------LLSADHIIIATGG 190
F KAS + E+ V V + G ++ +I+IA G
Sbjct: 1354525 FEGKASLLSENKVLIKKVKQQGHHYDDQEDDEEHYYEEDDEGDDEGQVIEGKNILIAVGN 1354704
Query: 191 RPRYPTHIEGALEYGITSDDIFWLKESPGKTLVVGASYVALECAGFLTGIGLDTTIMMR- 249
+P +P +++G +E I+SDD F +KE+ + +VG+ Y+A+E + +G+++ I R
Sbjct: 1354705 KPIFP-NVKG-IENTISSDDFFKIKEAK-RIGIVGSGYIAVELINVVKRLGMESYIFARG 1354875
Query: 250 SIPLRGFDQQMSSMVIEHMASHGTRFLRGCAPSRVRRLPDGQLQVTWEDSTTGKEDTGTF 309
+ LR FD+ + + + M + + + ++ + L + D + F
Sbjct: 1354876 NRLLRKFDETIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEH----F 1355043
Query: 310 DTVLWAIGRVPDTRSLNLEKAGVDTSPDTQKILVDSREATSVPHIYAIGD--VVEGRPE- 366
D V++ +GR P+T LNL+ + T + I+VD + T+V HIYA+GD +V+ + E
Sbjct: 1355044 DYVIYCVGRSPNTEDLNLQALNIKT--EKNYIIVDDNQRTNVKHIYAVGDCCMVKKKQEI 1355217
Query: 367 ------------------------------LTPIAIMAGRLLVQRLFGGSSDLMDYDNVP 396
LTP+AI AGRLL RLF S + +Y +P
Sbjct: 1355218 EDLNLLKLYNEEVYLKKKENTSGDQYYNVQLTPVAINAGRLLADRLFLKRSRITNYKLIP 1355397
Query: 397 TTVFTPLEYGCVGLSEEEAVARHGQEHVEVYHAHYKPLEFTVAGRDASQ---CYVKMVCL 453
+ +F+ G +G SE+EA+ +G+E+V++Y + + L F+V D +Q Y+K+VC+
Sbjct: 1355398 SVIFSHPPIGTIGYSEQEAIDIYGKENVKIYESRFTNLFFSVYDMDPAQKEKTYLKLVCV 1355577
Query: 454 REPPQLVLGLHFLGPNAGEVTQGFALGIKCGASYAQVMRTVGIHPTCSEEVVKL 507
+ +L+ GLH +G NA E+ QGFA+ +K A+ T+ IHPT +EE V +
Sbjct: 1355578 GK-EELIKGLHIVGLNADEIVQGFAVALKMNATKKDFDETIPIHPTAAEEFVTM 1355736
>Plasmodium_knowlesi_strain_H|chr14|2007-02-22|ds-
DNA|Plasmodium_knowlesi_Sanger
Length = 3159096
Score = 75.9 bits (185), Expect = 6e-14, Method: Composition-based stats.
Identities = 120/455 (26%), Positives = 200/455 (43%), Gaps = 32/455 (7%)
Frame = +1
Query: 82 LGGTCVNVGCIPKK-LMHQAALLGGLIQDAPNYGWEVAQPVPHDWRKMAEAVQNHVKSLN 140
LGGTC+N GCIP K L+H A G + V D + + + +L
Sbjct: 2225083 LGGTCLNRGCIPSKSLLHIAHNYYEAKNKFKQMGI-IVDNVQLDVETLHKHKNKCMGNLA 2225259
Query: 141 WGHRVQLQDRKVKYFNIKASFVDEHTVCGVAKGGKEILLSADHIIIATGGRP-------- 192
G + KV + S VD ++V V GKE L++A+ I+IATG +P
Sbjct: 2225260 DGITYLYKKNKVNHIIGHGSIVDGNSVL-VNSEGKEKLVTAERIVIATGSKPIEIPLKKL 2225436
Query: 193 -----RYPTHIEGALEYG----ITSDDIFWLKESPGKTLVVGASYVALECAGFLTGIGLD 243
+ + L+Y TSDDI K+ P K ++G + LE +G +
Sbjct: 2225437 NDDNVKEAETVVDLLQYDHQMIQTSDDILNFKKIPKKISIIGGGVIGLEIGSVFAKMGSE 2225616
Query: 244 TTIMMRSIPLRGF-DQQMSSMVIEHMASHGTRFLRGCAPSRVRRLPDGQLQVTWEDSTTG 302
I + L F D +S ++ + + +F + + + Q + +++ T
Sbjct: 2225617 VIIFEYNNRLCSFLDADVSRVLQKTLEKIKIKFAFNTSVIG-GNVENEQATIFAQNTKTK 2225793
Query: 303 KEDTGTFDTVLWAIGRVPDTRSLNLEKAGVDTSPDTQKILVD-SREATSVPHIYAIGDVV 361
+ T D VL +GR P+ +LNL+K ++ + +KI VD S S P I AIGD +
Sbjct: 2225794 EIQKVTSDVVLVCVGRRPNFDNLNLDKVNIELGKN-KKIQVDESFGVISHPTIKAIGDAI 2225970
Query: 362 EGRPELTPIA-----IMAGRLLVQ-RLFGGSSDLMDYDNVPTTVFTPLEYGCVGLSEEEA 415
+G P L A I+A LL + +L ++YD VP+ ++T E VGL+EE+
Sbjct: 2225971 DG-PMLAHKAEEEGYILANILLSELKLNKPKKSHINYDLVPSVIYTHPEVASVGLNEEKC 2226147
Query: 416 VARHGQEHVEVYHAHYKPLEFTVAGRDASQC------YVKMVCLREPPQLVLGLHFLGPN 469
+ + +K + F A S+ +K++ E + +LG +G N
Sbjct: 2226148 ---------KQMNLSFKAVTFPFAANSRSRTIDDFDGLIKLLVENETNK-ILGSQIVGNN 2226297
Query: 470 AGEVTQGFALGIKCGASYAQVMRTVGIHPTCSEEV 504
A ++ ++ + G S + + + HPT SE +
Sbjct: 2226298 ASDLILPLSIYVGSGGSSKSLSKIIYAHPTFSEVI 2226402
>Plasmodium_knowlesi_strain_H|PK4.chr05|2007-02-22|ds-
DNA|Plasmodium_knowlesi_Sanger
Length = 1324984
Score = 65.5 bits (158), Expect = 7e-11, Method: Composition-based stats.
Identities = 124/542 (22%), Positives = 199/542 (36%), Gaps = 92/542 (16%)
Frame = -3
Query: 53 ACAKEAAQLGRKVAVVDYVEPSPQGTRWGLGGTCVNVGCIP-KKLMHQAALLGGLIQDAP 111
A A A + G KV + G + +GGTCVNVGCIP K L++ L A
Sbjct: 762644 AAAINAMERGLKVIIF-------TGDKDSIGGTCVNVGCIPSKSLLYATGKYRELKNLAK 762486
Query: 112 NYGWEV--------------------AQPVPHDWRKMAEAVQNHVKSLNWGHRVQLQDRK 151
Y + + A V D K+ E Q+ + L G L+ +K
Sbjct: 762485 LYTYGIYTNAFRKSGKEDPVERNQLLADTVQIDIGKLKEYTQSVINKLKGGIENGLKKKK 762306
Query: 152 -------VKYFNIKASFVDEHTVCGVAKGGKEILLSADHIIIATGGRPRYPTHIEGALEY 204
V+ + V+++ + G K GKE +IIIATG P P +IE +
Sbjct: 762305 FCKNSEHVQVIYERGHIVEKNIIKG-EKSGKE--YQVKNIIIATGSTPNIPDNIEVDEKT 762135
Query: 205 GITSDDIFWLKESPGKTLVVGASYVALECAGFLTGIGLDTTIMMRSIPLRGFDQQMSSMV 264
TSD L+ +VG + +E T +G + + Q+ ++
Sbjct: 762134 VFTSDQAVKLEGLQKYMGIVGMGIIGIEFTDIYTALGSEVVSF-------DYSPQLLPLL 761976
Query: 265 IEHMASHGTRFLRGCAPSRVR--------RLPDGQLQVT--WEDSTTGKEDT-------- 306
+A++ R P RV R G V + +ED
Sbjct: 761975 DADVATYFERVFIKSKPMRVHLNTCIEYVRAGKGNQPVIIGHSERNDAEEDKPIQRNNKI 761796
Query: 307 --GTFDTVLWAIGRVPDTRSLNLEKAGVDTSPD----TQKILVDSREATSVPHIYAIGDV 360
D+ L A GR P+T ++ L+ + + + + V+ ++ +I+ IGD
Sbjct: 761795 KETRVDSCLVATGRKPNTNNMGLDDLQIQMNRGFVSVDEHLRVERKDQGVYDNIFCIGD- 761619
Query: 361 VEGRPELTPIAIMAGRLLVQRLFGGSSDLMD------------------YDNVPTTVFTP 402
G+ L A +V + + + Y N+P+ +T
Sbjct: 761618 ANGKQMLAHTASHQALKVVDWIISNGKETHNNTVHSIASHNDWASKPIIYRNIPSVCYTT 761439
Query: 403 LEYGCVGLSEEEAVARHGQEH----VEVYHAHYKPL----EFTVAGRDASQCY------- 447
E VGL+E+EA + E+ + Y A+ K L + T R + Y
Sbjct: 761438 PELAFVGLTEKEAKKLYPPENIGTEISFYKANSKVLCENNDITFPERSKNNSYNKGKYNT 761259
Query: 448 -------VKMVCLREPPQLVLGLHFLGPNAGEVTQGFALGIKCGASYAQVMRTVGIHPTC 500
VK+V L+E + +LGL +G A + L + S + V HPT
Sbjct: 761258 VDNTSGMVKIVYLKESKE-ILGLFIVGSYASILIHEGVLALNLKLSVIDLAHMVHSHPTI 761082
Query: 501 SE 502
SE
Sbjct: 761081 SE 761076
Database: genoma_PlasmoDB.fa
Posted date: Feb 22, 2008 12:03 PM
Number of letters in database: 23,462,190
Number of sequences in database: 14
Lambda K H
0.321 0.137 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 14
Number of Hits to DB: 13,526,975
Number of extensions: 195912
Number of successful extensions: 692
Number of sequences better than 1.0e-02: 4
Number of HSP's gapped: 678
Number of HSP's successfully gapped: 6
Length of query: 524
Length of database: 7,820,730
Length adjustment: 103
Effective length of query: 421
Effective length of database: 7,819,288
Effective search space: 3291920248
Effective search space used: 3291920248
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)
TR3
# TBLASTN 2.2.17 [Aug-26-2007]
# Query: SPP00000036_1.0 # Protein # Thioredoxin reductase 3 (TR3) # Homo sapiens # Complete
# Database: genoma_PlasmoDB.fa
# Fields: Query id, Subject id, % identity, alignment length, mismatches, gap openings, q. start, q. end, s. start, s. end, e-value, bit score
SPP00000036_1.0 Plasmodium_knowlesi_strain_H|PK4.chr07|2007-02-22|ds-DNA|Plasmodium_knowlesi_Sanger 46.12 503 253 8 261 745 910495 909014 3e-117 419
SPP00000036_1.0 Plasmodium_knowlesi_strain_H|PK4.chr13|2007-02-22|ds-DNA|Plasmodium_knowlesi_Sanger 27.31 476 285 13 323 737 1354351 1355736 5e-41 166
SPP00000036_1.0 Plasmodium_knowlesi_strain_H|chr14|2007-02-22|ds-DNA|Plasmodium_knowlesi_Sanger 25.17 453 310 16 310 733 2225083 2226399 3e-15 80.9
SPP00000036_1.0 Plasmodium_knowlesi_strain_H|PK4.chr11.pseudo.embl|2007-02-22|ds-DNA|Plasmodium_knowlesi_Sanger 28.12 96 64 3 173 263 2043701 2043979 0.006 39.7
TBLASTN 2.2.17 [Aug-26-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SPP00000036_1.0 # Protein # Thioredoxin reductase 3 (TR3) #
Homo sapiens # Complete
(754 letters)
Database: genoma_PlasmoDB.fa
14 sequences; 23,462,190 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Plasmodium_knowlesi_strain_H|PK4.chr07|2007-02-22|ds-DNA|Plasmod... 419 e-117
Plasmodium_knowlesi_strain_H|PK4.chr13|2007-02-22|ds-DNA|Plasmod... 166 5e-41
Plasmodium_knowlesi_strain_H|chr14|2007-02-22|ds-DNA|Plasmodium_... 81 3e-15
Plasmodium_knowlesi_strain_H|PK4.chr11.pseudo.embl|2007-02-22|ds... 40 0.006
>Plasmodium_knowlesi_strain_H|PK4.chr07|2007-02-22|ds-
DNA|Plasmodium_knowlesi_Sanger
Length = 1496036
Score = 419 bits (1077), Expect = e-117, Method: Composition-based stats.
Identities = 226/503 (44%), Positives = 304/503 (60%), Gaps = 18/503 (3%)
Frame = -2
Query: 261 QEDLAYDYDXXXXXXXXXXXXCAKEAAILGKKVMVLDFVVPSPQGTSWGLGGTCVNVGCI 320
Q + YDYD AKEAA G KV++ D+V PS +GT WG+GGTCVNVGC+
Sbjct: 910495 QGECNYDYDYVVIGGGPGGMASAKEAASHGAKVLLFDYVKPSNKGTKWGIGGTCVNVGCV 910316
Query: 321 PKKLMHQAALLGQAL-CDSRKFGWEYNQQVRHNWETMTKAIQNHISSLNWGYRLSLREKA 379
PKKLMH A +G DS +GW YN + HNW + +Q+HI SLN+ Y LR
Sbjct: 910315 PKKLMHYAGNMGSLFKMDSNPYGWSYNNLI-HNWGKLVTTVQSHIRSLNFSYMTGLRSSK 910139
Query: 380 VAYVNSYGEFVEHHKIKATNK--KGQETYYTAAQFVIATGERPRYLG-IQGDKEYCITSD 436
V Y+N + H + K +E TA +IATG RP ++G KE ITSD
Sbjct: 910138 VKYMNGLASLKDEHTVSYYLKGDMSKEELVTAKYILIATGCRPSIPDDVEGAKELSITSD 909959
Query: 437 DLFSLPYCPGKTLVVGASYVALECAGFLAGFGLDVTVMVRSILLRGFDQEMAEKVGSYME 496
D+FS+ PGKTL+VGASYVALECAGFL G DVTV VRSI+LRGFD + A KV YME
Sbjct: 909958 DIFSMKKDPGKTLIVGASYVALECAGFLNSLGYDVTVAVRSIVLRGFDSQCALKVKIYME 909779
Query: 497 QHGVKFLRKFIPVMVQQLEKGSPGKLKVLAKSTEGTETIEGVYNTVLLAIGRDSCTRKIG 556
+ GV F +P ++L K K+ VL +GT + ++TVL A GR +
Sbjct: 909778 EQGVLFKHGVLP---KKLSKMEGEKISVLF--NDGTTEL---FDTVLYATGRKGDIDMLN 909623
Query: 557 LEKIGVKINEKSGKIPVNDVEQTNVPYVYAVGDILEDKPELTPVAIQSGKLLAQRLFGAS 616
L+++ +++N+ + KI N+V TN+ ++AVGD+ D PEL PVAI++G++LA+RLF S
Sbjct: 909622 LDQVKIQVNKNTNKIITNEVSCTNISNIFAVGDVAVDVPELAPVAIKAGEILARRLFNQS 909443
Query: 617 LEKCDYINVPTTVFTPLEYGCCGLSEEKAIEVYKKENLEIYHTLFWPLEWTVAGRE---- 672
E DY +PT+++TP+EYG CG SEEKA E++ N+E++ F LE + RE
Sbjct: 909442 EEIMDYTFIPTSIYTPIEYGTCGYSEEKAYEIFGTSNVEVFLQEFNNLEISAVHREKHVR 909263
Query: 673 ----------NNTCYAKIICNKFDHDRVIGFHILGPNAGEVTQGFAAAMKCGLTKQLLDD 722
++TC +K++C K + +RV+GFH +GPNAGE+TQG A A++ K D
Sbjct: 909262 AQKDQYDTDVSSTCLSKLVCLKNEDNRVVGFHYVGPNAGEITQGMALALRLKAKKSDFDK 909083
Query: 723 TIGIHPTCGEVFTTLEITKSSGL 745
IGIHPT E F L IT+SSGL
Sbjct: 909082 CIGIHPTDAESFMNLTITRSSGL 909014
>Plasmodium_knowlesi_strain_H|PK4.chr13|2007-02-22|ds-
DNA|Plasmodium_knowlesi_Sanger
Length = 2200295
Score = 166 bits (419), Expect = 5e-41, Method: Composition-based stats.
Identities = 130/476 (27%), Positives = 221/476 (46%), Gaps = 61/476 (12%)
Frame = +1
Query: 323 KLMHQAALLGQALCDSRKFGWEYNQQVRHNWETMTKAIQNHISSLNWGYRLSLREKAVAY 382
++M AA + L +SR +G ++ Q N + + +I LN YR +L++ V Y
Sbjct: 1354351 QIMFNAASIHDILENSRHYG--FDTQFSFNLPLLVERRDKYIRRLNDIYRQNLKKDNVEY 1354524
Query: 383 VNSYGEFVEHHKIKATNKKGQETYY------------------------TAAQFVIATGE 418
+ +K+ K Q +Y +IA G
Sbjct: 1354525 FEGKASLLSENKVLIKKVKQQGHHYDDQEDDEEHYYEEDDEGDDEGQVIEGKNILIAVGN 1354704
Query: 419 RPRYLGIQGDKEYCITSDDLFSLPYCPGKTLVVGASYVALECAGFLAGFGLDVTVMVR-S 477
+P + ++G E I+SDD F + + +VG+ Y+A+E + G++ + R +
Sbjct: 1354705 KPIFPNVKG-IENTISSDDFFKIKEAK-RIGIVGSGYIAVELINVVKRLGMESYIFARGN 1354878
Query: 478 ILLRGFDQEMAEKVGSYMEQHGVKFLRKFIPVMVQQLEKGSPGKLKVLAKSTEGTETIEG 537
LLR FD+ + ++ + M+++ + + V+++EK L + E
Sbjct: 1354879 RLLRKFDETIINELENDMKKNNINIITH---ANVEEIEKVKEKNLTIYLSDGRKYEH--- 1355040
Query: 538 VYNTVLLAIGRDSCTRKIGLEKIGVKINEKSGKIPVNDVEQTNVPYVYAVGDI------- 590
++ V+ +GR T + L+ + +K EK+ I V+D ++TNV ++YAVGD
Sbjct: 1355041 -FDYVIYCVGRSPNTEDLNLQALNIK-TEKN-YIIVDDNQRTNVKHIYAVGDCCMVKKKQ 1355211
Query: 591 -LED-------------------------KPELTPVAIQSGKLLAQRLFGASLEKCDYIN 624
+ED +LTPVAI +G+LLA RLF +Y
Sbjct: 1355212 EIEDLNLLKLYNEEVYLKKKENTSGDQYYNVQLTPVAINAGRLLADRLFLKRSRITNYKL 1355391
Query: 625 VPTTVFTPLEYGCCGLSEEKAIEVYKKENLEIYHTLFWPLEWTVAGR---ENNTCYAKII 681
+P+ +F+ G G SE++AI++Y KEN++IY + F L ++V + Y K++
Sbjct: 1355392 IPSVIFSHPPIGTIGYSEQEAIDIYGKENVKIYESRFTNLFFSVYDMDPAQKEKTYLKLV 1355571
Query: 682 CNKFDHDRVIGFHILGPNAGEVTQGFAAAMKCGLTKQLLDDTIGIHPTCGEVFTTL 737
C + + G HI+G NA E+ QGFA A+K TK+ D+TI IHPT E F T+
Sbjct: 1355572 CVG-KEELIKGLHIVGLNADEIVQGFAVALKMNATKKDFDETIPIHPTAAEEFVTM 1355736
>Plasmodium_knowlesi_strain_H|chr14|2007-02-22|ds-
DNA|Plasmodium_knowlesi_Sanger
Length = 3159096
Score = 80.9 bits (198), Expect = 3e-15, Method: Composition-based stats.
Identities = 114/453 (25%), Positives = 207/453 (45%), Gaps = 29/453 (6%)
Frame = +1
Query: 310 LGGTCVNVGCIP-KKLMHQAALLGQALCDSRKFGWEYNQQVRHNWETMTKAIQNHISSLN 368
LGGTC+N GCIP K L+H A +A ++ G + V+ + ET+ K + +L
Sbjct: 2225083 LGGTCLNRGCIPSKSLLHIAHNYYEAKNKFKQMGIIVD-NVQLDVETLHKHKNKCMGNLA 2225259
Query: 369 WGYRLSLREKAVAYVNSYGEFVEHHKIKATNKKGQETYYTAAQFVIATGERPRYLG---- 424
G ++ V ++ +G V+ + + N +G+E TA + VIATG +P +
Sbjct: 2225260 DGITYLYKKNKVNHIIGHGSIVDGNSV-LVNSEGKEKLVTAERIVIATGSKPIEIPLKKL 2225436
Query: 425 --------------IQGDKEYCITSDDLFSLPYCPGKTLVVGASYVALECAGFLAGFGLD 470
+Q D + TSDD+ + P K ++G + LE A G +
Sbjct: 2225437 NDDNVKEAETVVDLLQYDHQMIQTSDDILNFKKIPKKISIIGGGVIGLEIGSVFAKMGSE 2225616
Query: 471 VTVMVRSILLRGF-DQEMAEKVGSYMEQHGVKFLRKFIPVMVQQLEKGSPGKLKVLAKST 529
V + + L F D +++ + +E+ +KF V+ +E + + A++T
Sbjct: 2225617 VIIFEYNNRLCSFLDADVSRVLQKTLEKIKIKFAFN-TSVIGGNVEN---EQATIFAQNT 2225784
Query: 530 EGTETIEGVYNTVLLAIGRDSCTRKIGLEKIGVKINEKSGKIPVND-VEQTNVPYVYAVG 588
+ E + + VL+ +GR + L+K+ +++ K+ KI V++ + P + A+G
Sbjct: 2225785 KTKEIQKVTSDVVLVCVGRRPNFDNLNLDKVNIELG-KNKKIQVDESFGVISHPTIKAIG 2225961
Query: 589 DILEDKPELTPVAIQSGKLLAQRLFGA---SLEKCDYIN---VPTTVFTPLEYGCCGLSE 642
D + D P L A + G +LA L + K +IN VP+ ++T E GL+E
Sbjct: 2225962 DAI-DGPMLAHKAEEEGYILANILLSELKLNKPKKSHINYDLVPSVIYTHPEVASVGLNE 2226138
Query: 643 EKAIEVYKKENLEIYHTLFWPLEWTVAGR--ENNTCYAKIICNKFDHDRVIGFHILGPNA 700
EK K+ NL + + +P R ++ K++ + ++++G I+G NA
Sbjct: 2226139 EKC----KQMNLS-FKAVTFPFAANSRSRTIDDFDGLIKLLVEN-ETNKILGSQIVGNNA 2226300
Query: 701 GEVTQGFAAAMKCGLTKQLLDDTIGIHPTCGEV 733
++ + + G + + L I HPT EV
Sbjct: 2226301 SDLILPLSIYVGSGGSSKSLSKIIYAHPTFSEV 2226399
>Plasmodium_knowlesi_strain_H|PK4.chr11.pseudo.embl|2007-02-22|ds-
DNA|Plasmodium_knowlesi_Sanger
Length = 2372884
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Frame = +2
Query: 173 LIERSRVVIF---SKSY--CPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITN 227
LI +++++F SK++ C S V + +S ++ ++ Q D V+ L +N
Sbjct: 2043701 LITNNKIILFMKGSKTFPQCKFSNAVVFMLNSCKIKYTTFDILQDQD---VRNELKVYSN 2043871
Query: 228 QKTVPNIFVNKVHVGGCDQTFQAYQSGLLQKLLQED 263
T P +++NK +GG D Y SG L++++ ED
Sbjct: 2043872 WPTYPQLYINKELIGGHDIIKSMYDSGDLREVIPED 2043979
Database: genoma_PlasmoDB.fa
Posted date: Feb 22, 2008 12:03 PM
Number of letters in database: 23,462,190
Number of sequences in database: 14
Lambda K H
0.319 0.137 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 14
Number of Hits to DB: 19,875,790
Number of extensions: 297276
Number of successful extensions: 1217
Number of sequences better than 1.0e-02: 4
Number of HSP's gapped: 1210
Number of HSP's successfully gapped: 5
Length of query: 754
Length of database: 7,820,730
Length adjustment: 106
Effective length of query: 648
Effective length of database: 7,819,246
Effective search space: 5066871408
Effective search space used: 5066871408
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 67 (30.4 bits)
