CLUSTAL FORMAT for T-COFFEE Version_5.05 [http://www.tcoffee.org], CPU=0.35 sec, SCORE=49, Nseq=2, Len=874 

Secp43                 --MASVHCQLWMGSLESYMTENFIIAAFRKMGEDPTTVRLMRNKYTGEPAGYCFVNFISD
sep43_pknowlesi_cds_1  MHPSFSTASLYVGDLNEDVTEAVLYEIFNTVGH-VSSIRVCRDSVTRKSLGYAYVNYHNL
                          :   ..*::*.*:. :** .:   *..:*.  :::*: *:. * :. **.:**: . 

Secp43                 DHALDAMHKLNGKPIPGTNPIVRFRLNSASNSYKLPGNEREFSVWVGDLSSDVDDYQLYK
sep43_pknowlesi_cds_1  ADAERALDTLNYTNIKGQP--ARLMWSHRDPSLRKSGAG---NIFVKNLDKSIDNKALFD
                        .*  *:..** . * *    .*:  .  . * : .*     .::* :*...:*:  *:.

Secp43                 VFSSKFTSIKTAKVILDSLGFSKGYGFVRFGIEDEQKSALYDMNGYIGLGTKPIKICNAV
sep43_pknowlesi_cds_1  TFS-MFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNG-IQLGSKNVYVGHFI
                       .**  * .* :.**  *.:* **.****::  *:. *.*: .:** * **:* : : : :

Secp43                 PKPK--------------------------------------------------------
sep43_pknowlesi_cds_1  KRSERATNDTKFTNLYVKNFPDSVTEAHLKQLFSPYGEITSMIVKTDNKNRKFCFINYAD
                        :.:                                                        

Secp43                 ----------------------------------------------------SELGGAVG
sep43_pknowlesi_cds_1  SESAKNAMENLNGKKITDDGQIDHTYDAKKEEAENANANNGTNNGIATGADANGVEGEVG
                                                                           . : * **

Secp43                 EGNTNYGYGSG-MTAAGGTDYS--------------------------------------
sep43_pknowlesi_cds_1  KGTTVDGKGDNKVSTAGDTGKSGEETEGGANTTGATSESVKGNEGNKVESDDKANETSGV
                       :*.*  * *.. :::**.*. *                                      

Secp43                 ------------------------------------------------------------
sep43_pknowlesi_cds_1  TSTDGASNVKEDGASSIAANAAAQGESTNGINKKDSGSESADSPNILYVGPHQSRARRHA
                                                                                   

Secp43                 ------------------------------------------------------------
sep43_pknowlesi_cds_1  ILKAKFDNLNMESKNKHQGVNLYIKNLDDAIDDQTLKELFEPYGTITSAKVMRDDKEQSK
                                                                                   

Secp43                 ------------------------------------------------------------
sep43_pknowlesi_cds_1  GFGFVCFAQQEEANKAVTEMHLKIINGKPLYVGLAEKREQRLSRLQQRFRMHPIRHHMNN
                                                                                   

Secp43                 ------QYYDPTSTYWQGYQAWQ-------------------------------------
sep43_pknowlesi_cds_1  ALNSPMQYPNPQSPQLQFNQNTLNYGRPVLTPFNQNNLISWRHQQAAQQQVVHQQAAQQQ
                             ** :* *.  *  *                                        

Secp43                 --------------GYYEQAGASITDAAAYY-----------------------------
sep43_pknowlesi_cds_1  LNFNANLRGQMNQMRFYTQGGANMMNNSMNQNKVNAQLHPGHQYPNALGQGNPQQPNLSA
                                      :* *.**.: : :                                

Secp43                 ------QQAMSQSHSNPQTL----------------------------------------
sep43_pknowlesi_cds_1  PGQHNNNQAMQQQPANNQMLNNNMRNMNNRASRNMGAGNIANIPNQKQLPINMVGKQNTS
                             :***.*. :* * *                                        

Secp43                 --------------AQHAEAWSAQRSAQYEQQQQQQTASAANG-----------------
sep43_pknowlesi_cds_1  QGSQMNHQGPPPPQQQQGQGSPQQQQTQQKSPQQMQQQVPPNGNFKFTSQARNRMEMPNK
                                      *:.:. . *:.:* :. ** *   ..**                 

Secp43                 --------------------------------------AEDENGLVEHKFVLDVDKLNRE
sep43_pknowlesi_cds_1  NANKVNAINNMNVNFNNSSTLTAAALASAPPSMQKQVLGENLFPLVANYHPTLAGKITGM
                                                             .*:   ** : .   ..*:.  

Secp43                 AIDADR-RLYDALESSKWLPIEQLEVF-------
sep43_pknowlesi_cds_1  MLEMDNSELLILLENEEQLKKKIDEALVVLQKAK
                        :: *. .*   **..: *  :  *.: