genewise $Name: wise2-2-0 $ (unreleased release)
This program is freely distributed under a GPL. See source directory
Copyright (c) GRL limited: portions of the code are from separate copyright

Query protein:       MAL8P186_Plasmodiumfalciparum_protein
Comp Matrix:         blosum62.bla
Gap open:            12
Gap extension:       2
Start/End            global
Target Sequence      subseq(1036000,5000)
Strand:              forward
Start/End (protein)  global
Gene Paras:          human.gf
Codon Table:         codon.table
Subs error:          1e-05
Indel error:         1e-05
Model splice?        model
Model codon bias?    flat
Model intron bias?   tied
Null model           syn
Algorithm            623

genewise output
Score 296.73 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

MAL8P186_Plasmo    1 MILKKVYILIILILLSILSRTVDSU-SKQLHIKLPDEDDDYLAKLIGVF 
                     M+L KVY+L IL+L  + +  V++  SK+LHIKLP+EDDDYL KLI +  
                     MVLNKVYLLTILVLFYVNTLCVEAGXSKKLHIKLPNEDDDYLGKLINIS 
subseq(1036000, 1351 agtaagtccaacgcttgaactggggttaatcaaccaggggttgataaat 
                     tttaatattctttttatactgtacggcaatatatcaaaaaatgattatc 
                     gtgtggcgcccgggtcttcatgaagacagacagaatgttccgaaacctg 


MAL8P186_Plasmo   49 NDICTYSINNKEKIAKILSTSAVSVYTITSLYNSGITFKKNPHYSFFLP 
                     + I  Y+ NNK KIAKILSTSA+S Y++  +Y +G+T+ K+PHYS+F+P 
                     SKITKYAQNNKFKIAKILSTSALSAYSLNWVYQTGVTLLKDPHYSLFVP 
subseq(1036000, 1498 aaaaatgcaaataagaattatgctgttcatgtcaggatcagccttctgc 
                     gatcaacaaaatatcattcccctccactagtaacgtcttaacaactttc 
                     tgaaacaactgtattatatagataccgtcgacgatcagagcacccgccc 


MAL8P186_Plasmo   98 SQKYILKIINNNVNIQNNDIKKIDNLKDIPIFERTFTNKH-NIQMSKTY 
                     S  Y+   I     I+ N   K    K   I+ER F +++ N +M + Y 
                     SNNYMNNAIRR---IRTNYPVKSYTFKVNKILERNFHHEYANTEMGQIY 
subseq(1036000, 1645 taataaagaaa   aaaatcgaatatagaaatgaatccgtgaagagcat 
                     caaataactgg   tgcaactagactataattagataaaacacatgata 
                     ttccgctctag   tgattagatcatagtatgagttccatccaaggaat 


MAL8P186_Plasmo  146 ILNNFINFINFLPYKLKKESLYNFSKYKEFDGLKYVENPFTQVQVLNHE 
                     ++NNF+NF+NFLPYK +K+  YNF KYKEF+    + N F  +++  HE 
                     VVNNFVNFLNFLPYKWRKKCTYNFCKYKEFEN---IGNLFNCIRISKHE 
subseq(1036000, 1783 ggaatgattattctataaatatattatagtga   agactataaaaacg 
                     ttaattattattcaaggaagcaatgaaaataa   tgattagtgtgaaa 
                     tatttgttatcaccggaaataccttataatat   catttcccaatgta 


MAL8P186_Plasmo  195 DNIIVYQAKTKKHYWIHLPFKYNIIKISDDNTTSYILMFIPLYKYYSNY 
                       I+++Q K KK YWIHLP+KY I+K  ++++    L F PL+KYYS+Y 
                     GPILLFQGKLKKQYWIHLPLKYEIVKNGEEDSLC-TLTFTPLHKYYSDY 
subseq(1036000, 1921 gcatttcgataacttactccatgagaaggggttt acatactcatttgt 
                     gcttttagataaaagtatctaaattaagaaactg ctctcctaaaacaa 
                     actgacggaaaagcgatgaaatatgatggattac atatttacattttt 


MAL8P186_Plasmo  244 IIQMKITSNNNNQNVTFSSCIKQEKTEHIQNNSFHYDIIKNISKHITYD 
                      I++K+     N NVTF + +K     +   NSF+ ++I+NI+  + YD 
                     TIEIKLVKEKENNNVTFITSVKCANKNNGNGNSFYINVIQNIAMFLAYD 
subseq(1036000, 2065 aagaacgagagaaagataatgatgaaaagagatttaagacaagattgtg 
                     ctatattaaaaaaatcttcctagcaaaagagactatattaatctttcaa 
                     tcgaagggggatttactccttacccgttatataccatgtattcgtaatt 


MAL8P186_Plasmo  293 IINAIDNNINILYMRNVKPGKYNFINTTNALQKKTKNYKKKKFTLPSFK 
                     I+  I+NNI++++ RN    K  F NT+N   K+ K    +    P +  
                     IFEGINNNIHVVHRRNANYRKTTF-NTSNVTLKRKKKTNFQFVLSPVIN 
subseq(1036000, 2212 atggaaaaacggcaaagataaaat aatagataaaaaaatctgctcgaa 
                     ttagtaaatattaggacaagacct accatctagaaacatatttcctta 
                     ttaaatccctgacaatactaaatt caatctaaaaaaattgcccggccc 


MAL8P186_Plasmo  342 SLPFKFKRT                                         
                        FK++R+                                         
                     PWSFKIRRS                                         
subseq(1036000, 2356 ctataacca                                         
                     cggtatggg                                         
                     ggttaaggt                                         


//
Gene 1
Gene 1351 2382 
  Exon 1351 2382 phase 0
//
>subseq(1036000,5000).[1351:2382].sp.tr
MVLNKVYLLTILVLFYVNTLCVEAG*SKKLHIKLPNEDDDYLGKLINISSKITKYAQNNK
FKIAKILSTSALSAYSLNWVYQTGVTLLKDPHYSLFVPSNNYMNNAIRRIRTNYPVKSYT
FKVNKILERNFHHEYANTEMGQIYVVNNFVNFLNFLPYKWRKKCTYNFCKYKEFENIGNL
FNCIRISKHEGPILLFQGKLKKQYWIHLPLKYEIVKNGEEDSLCTLTFTPLHKYYSDYTI
EIKLVKEKENNNVTFITSVKCANKNNGNGNSFYINVIQNIAMFLAYDIFEGINNNIHVVH
RRNANYRKTTFNTSNVTLKRKKKTNFQFVLSPVINPWSFKIRRS
//
>subseq(1036000,5000).[1351:2382].sp
ATGGTTTTGAATAAGGTGTACCTGCTCACCATCCTGGTGCTGTTTTACGTTAATACCCTA
TGTGTGGAAGCAGGGTGATCCAAAAAGTTACACATAAAGCTACCAAATGAGGATGATGAC
TACTTGGGAAAATTAATCAACATTTCGAGTAAGATAACAAAATACGCACAAAACAATAAG
TTTAAAATTGCTAAAATTTTATCTACATCGGCACTTTCAGCCTACTCGCTTAACTGGGTA
TACCAGACAGGTGTCACATTGCTAAAGGACCCACACTACTCCCTGTTCGTCCCCTCTAAT
AACTACATGAACAATGCCATTAGAAGGATTAGGACAAATTATCCAGTGAAAAGTTACACA
TTTAAAGTGAATAAAATTTTGGAAAGGAATTTTCACCACGAATATGCCAACACAGAAATG
GGGCAAATATATGTTGTAAATAATTTTGTGAATTTTTTAAATTTCTTACCCTACAAGTGG
AGAAAAAAATGTACATACAACTTTTGTAAATATAAAGAATTTGAAAATATCGGAAATCTT
TTTAACTGCATCAGAATAAGTAAGCATGAAGGACCCATTTTGTTATTCCAGGGGAAATTA
AAAAAACAGTACTGGATACATTTGCCACTAAAATATGAAATTGTGAAAAATGGGGAGGAA
GATTCTTTATGCACACTTACATTTACTCCTTTACACAAATATTATTCTGATTATACTATC
GAGATAAAACTGGTGAAGGAGAAGGAAAATAATAATGTAACCTTTATCACCTCTGTTAAA
TGCGCCAACAAGAATAATGGAAATGGAAATTCATTCTACATAAATGTGATTCAAAATATT
GCCATGTTTTTAGCATATGATATTTTTGAAGGAATAAATAACAACATCCATGTGGTACAC
AGAAGAAATGCAAACTATAGAAAAACAACTTTTAACACATCAAATGTCACTTTAAAAAGA
AAAAAAAAAACAAATTTTCAGTTCGTCCTCTCGCCGGTCATCAACCCGTGGAGTTTTAAA
ATACGGCGGAGT
//