genewise $Name: wise2-2-0 $ (unreleased release)
This program is freely distributed under a GPL. See source directory
Copyright (c) GRL limited: portions of the code are from separate copyright
Query protein: SPP00000033_1.0
Comp Matrix: blosum62.bla
Gap open: 12
Gap extension: 2
Start/End global
Target Sequence subseq(408351,3263)
Strand: forward
Start/End (protein) global
Gene Paras: human.gf
Codon Table: codon.table
Subs error: 1e-05
Indel error: 1e-05
Model splice? model
Model codon bias? flat
Model intron bias? tied
Null model syn
Algorithm 623
genewise output
Score -45.44 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
SPP00000033_1.0 1 MAEASATGACGEAMAAAEGSSGPAGLTLGRSFSNYRPFEPQALGLSPSW
+ E + E M A L + + + YR ++ + +
QRERRTNSSLPEYMYRAYEEEYERRLLVSKETA-YRVYQEEGEN-GTTI
subseq(408351,3 1038 cagaaaattccgtatcgtgggtgaatcgaagag tcgtcgggga gaaa
agaggcacctcaatagcaaaaaaggtttgaacc agtaaaagaa gcct
agagaatcttaacgctatagatagaatttaagc tagtgagaac aaca
SPP00000033_1.0 50 RLTGFSGMKGUGCKVPQEALLKLLAGLTRPDVRPPLGRGLVGG------
+ G G + + + + + + R GG
TIIVQDGSVHKGTPSHSDTKREKVNSYIKESIEKIINRNTCGGCGSKVP
subseq(408351,3 1179 aaagcggagcagactctgaaagagattaagaagaaaacaatggtgtagc
ctttaaggtaagcccacacagaatacataagtaattagacgggggcatc
gatggtcttcgacttcctagaagatattaatcgaatcatataataagtt
SPP00000033_1.0 93 -QEEASQEAGLPAGAGPSPTFPALGIGMDSCVI---PLRHGGLS--LVQ
++ GL P+ F + D C++ + G S LVQ
SNVLSNSLKGLSVYNSPN-VFLGIEACDDCCIFVHSKSKRGEESPALVQ
subseq(408351,3 1326 tagctattagttgtatca gtcgaggtggttatgcaataagggacgcgc
cattcactagtctaacca tttgtacgaaggtttagacaggaagcctta
attagtagacatgccaat gcaataattcccatattatagaaactatca
SPP00000033_1.0 136 TTDFFYPLVEDPYMMGRIACANVLSDLYAMGITECDNMLMLLSVSQSMS
T DFF ++D Y++G I + LSD+Y+MG T + +L+ V ++
TIDFFKSFIDDEYILGEIIAIHCLSDVYSMGGTGICALCVLI-VKDNIE
subseq(408351,3 1470 aagttattagggtatggaagactttggtaaggagatgttgca gagaag
ctattacttaaaattgattctagtcatagtggcgtgctgttt taaata
aattcaatcttataagaatctttattgccgaaaactcgcagt ggtctg
SPP00000033_1.0 185 EEEREKVTPLMVKGFRDAAEEGGTAVTGGQTVVNPWIIIGGVATVVCQ
++ ++++ ++ G +E ++GG T +G V +
KKLQQRLQNILT-GCCQKLKEEKCVLSGGHTCAGNENYVG--LAVTGK
subseq(408351,3 1614 aacccatcaata gttcataggatgtaggcatggagatgg tggaga
aataagtaattc gggaataaaagttgggacgcgaaaatg tctcga
ggaagaagttat gtcgggaggatcgtgttctgatgttct gacgag
SPP00000033_1.0 233 PNEFIMPD---SAVVGDVLVLTKPLG
N +++P S GD+++ TK G
ENYLFLPKGSGSVKAGDIIITTKMFG
subseq(408351,3 1749 GTGAAAA Intron 1 AAGgatctccagagagagggaaaaaaatg
<0-----[1749 : 1967]-0>aaatttcaggggtacgatttccattg
atcacacgacataggtcaatcaagcc
SPP00000033_1.0 256 TQVAVNAHQWLDNPERWNKVKMVVSREEVELAYQEAMFNMATLNRTAAG
+ AH RW + +E+ L+ + ++
FGFIMAAHICKKAKARW----IYICLDEMLLSNR----------KSGLY
subseq(408351,3 2046 tgtaaggcataagagat atatcggacctaa aagtt
tgtttccatgaacacgg tatgtaatttcag aggta
ccccgtatatagcatag tcccttagccatg gtgac
SPP00000033_1.0 305 LMHTFNAHAATDITGFGILGHSQNLAKQQRNEVSFVIHNLPIIAKMAAV
L+ NA A TD+TGFGILGH + K R E+ F H K ++
LLQNNNAKACTDVTGFGILGHLNEMIKCSRREIYFASH-----MKKKSL
subseq(408351,3 2151 ctcaaagagtaggagtgacgccagaaattaagattgtc aaaatc
ttaaaacacgcatcgtgttgataattagcggatatcca taaact
tgattttatcctatgtacaccgcagcactggattttat gagacg
SPP00000033_1.0 354 SKASGRFGLLQGTSAETSGGL--LICLPREQAARFCSEIKSSKYGEGHQ
S R +L+G + G + P +KS EG +
HTTSQR-KILEGRNKRMDDGENDQVKEPPMNLIGAKINLKSFIVAEGVE
subseq(408351,3 2283 caatca aacggaaaaaggggagcgagccaacaggaaacaatagggggg
acccag attaggaagtaagaaaataacctattgcatatagtttcagta
caaaag gatagataagttaatcgggatcgtccaagatcgctacaaata
SPP00000033_1.0 401 AWIVGIVEKGNRTARIIDKPRVIEVLPRGATAAVLAPDSSNASSEPSS
I N + + K + A L+ +P +
ECI-----ENNIFSSMYKKNHYLCNNIINLEEASLS-ERYGLLFDPQT
subseq(408351,3 2427 gta gaaatttataaactttaaaaatgggtca gctgcttgcca
agt aaattcctaaaaaatgaattataacctg agagtttacac
gcc atttctcgcgatccgctttatggatagt gctatgtcggc
//
Gene 1
Gene 1038 2552
Exon 1038 1748 phase 0
Exon 1968 2552 phase 0
//
>subseq(408351,3263).[1038:2552].sp.tr
QRERRTNSSLPEYMYRAYEEEYERRLLVSKETAYRVYQEEGENGTTITIIVQDGSVHKGT
PSHSDTKREKVNSYIKESIEKIINRNTCGGCGSKVPSNVLSNSLKGLSVYNSPNVFLGIE
ACDDCCIFVHSKSKRGEESPALVQTIDFFKSFIDDEYILGEIIAIHCLSDVYSMGGTGIC
ALCVLIVKDNIEKKLQQRLQNILTGCCQKLKEEKCVLSGGHTCAGNENYVGLAVTGKENY
LFLPKGSGSVKAGDIIITTKMFGFGFIMAAHICKKAKARWIYICLDEMLLSNRKSGLYLL
QNNNAKACTDVTGFGILGHLNEMIKCSRREIYFASHMKKKSLHTTSQRKILEGRNKRMDD
GENDQVKEPPMNLIGAKINLKSFIVAEGVEECIENNIFSSMYKKNHYLCNNIINLEEASL
SERYGLLFDPQT
//
>subseq(408351,3263).[1038:2552].sp
CAAAGGGAAAGGAGAACAAATTCCTCTCTTCCAGAATACATGTACCGTGCATATGAAGAG
GAATATGAAAGGAGATTACTTGTTAGTAAAGAAACGGCCTATCGAGTGTATCAGGAAGAG
GGAGAAAACGGAACAACCATAACGATAATTGTGCAGGATGGCAGTGTTCACAAGGGAACC
CCTTCTCACTCCGATACAAAGAGAGAAAAGGTAAATTCATATATTAAAGAAAGTATCGAG
AAAATAATTAACCGAAATACATGTGGAGGATGTGGATCAAAGGTTCCTTCAAATGTTCTA
TCGAATTCATTGAAAGGCTTATCTGTGTACAACTCACCAAATGTGTTCCTAGGAATTGAA
GCATGTGATGACTGCTGCATATTTGTACATAGTAAATCTAAAAGGGGAGAAGAAAGCCCT
GCACTTGTCCAAACAATAGATTTTTTCAAATCATTTATCGATGATGAATATATATTAGGG
GAAATAATTGCCATTCATTGTTTATCTGATGTGTACAGCATGGGAGGAACAGGAATCTGT
GCCTTGTGCGTACTGATTGTGAAGGATAACATTGAGAAGAAGCTACAACAGAGATTACAG
AATATTTTAACTGGGTGTTGCCAGAAGTTGAAAGAGGAGAAATGTGTCTTGAGTGGGGGT
CATACCTGTGCGGGAAATGAGAATTATGTCGGTTTGGCAGTCACGGGAAAGGAAAATTAC
CTATTCCTACCCAAGGGAAGCGGAAGTGTAAAGGCGGGTGACATAATAATTACCACAAAA
ATGTTCGGCTTCGGCTTCATCATGGCTGCACATATATGTAAAAAGGCCAAAGCTAGATGG
ATTTACATCTGCCTTGATGAAATGCTCCTCTCAAATAGGAAGAGTGGGTTATACCTTTTG
CAAAATAATAATGCTAAAGCTTGCACCGATGTAACTGGGTTTGGAATCCTAGGCCACCTG
AACGAAATGATCAAATGCTCTAGGAGGGAAATTTATTTTGCTTCACATATGAAAAAGAAA
TCCCTGCACACAACATCACAAAGGAAGATACTTGAAGGGAGAAATAAAAGAATGGATGAT
GGAGAAAATGACCAGGTGAAGGAACCTCCCATGAATCTCATCGGAGCAAAGATAAATCTC
AAGAGCTTTATAGTCGCAGAAGGAGTTGAAGAGTGCATCGAAAATAATATTTTCTCTTCC
ATGTACAAGAAAAATCACTACTTGTGCAATAATATTATAAATTTGGAGGAAGCTTCACTG
AGTGAGCGCTATGGACTTTTGTTTGACCCGCAGACC
//
