TBLASTN 2.2.17 [Aug-26-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= subseq(408351,3263)_1
(811 letters)
Database: cds.fa
5106 sequences; 11,140,562 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Plasmodium_knowlesi_strain_H|PK4.chr07|PKH_070780|Annotation|Pla... 996 0.0
Plasmodium_knowlesi_strain_H|PK4.chr03|PKH_030600|Annotation|Pla... 31 1.0
Plasmodium_knowlesi_strain_H|PK4.chr13|PKH_133400|Annotation|Pla... 28 6.5
Plasmodium_knowlesi_strain_H|PK4.chr03|PKH_030040|Annotation|Pla... 28 7.6
>Plasmodium_knowlesi_strain_H|PK4.chr07|PKH_070780|Annotation|Plasmodi
um_knowlesi_Sanger|(protein coding) selenophosphate
synthase, putative
Length = 3450
Score = 996 bits (2574), Expect = 0.0, Method: Composition-based stats.
Identities = 498/550 (90%), Positives = 498/550 (90%)
Frame = +1
Query: 1 MDKQLRRISAQVHLLYVHVASSEKEKLDFPCRDYLLXXXXXXXXXXXXXXXXXFVDIHDK 60
MDKQLRRISAQVHLLYVHVASSEKEKLDFPCRDYLL FVDIHDK
Sbjct: 796 MDKQLRRISAQVHLLYVHVASSEKEKLDFPCRDYLLVREIRGVKEEGEIKEIKFVDIHDK 975
Query: 61 EIIIRYDECINITGMRYPSYVLSFGGDATKCLSVNTFCQCTTDDYLYLLNQIKNYDDYAV 120
EIIIRYDECINITGMRYPSYVLSFGGDATKCLSVNTFCQCTTDDYLYLLNQIKNYDDYAV
Sbjct: 976 EIIIRYDECINITGMRYPSYVLSFGGDATKCLSVNTFCQCTTDDYLYLLNQIKNYDDYAV 1155
Query: 121 CETVYLNIYNKVHGNEYISIEHVKDYILTGDADDELGVSYLLPPTPNLFNHTVNXXXXXX 180
CETVYLNIYNKVHGNEYISIEHVKDYILTGDADDELGVSYLLPPTPNLFNHTVN
Sbjct: 1156 CETVYLNIYNKVHGNEYISIEHVKDYILTGDADDELGVSYLLPPTPNLFNHTVNYSYRIV 1335
Query: 181 XXXXXXXXXXXXXXXFLQNGVVSIMYRKREIEKYINGCIASGGREVFSSPSIRTFSLPIL 240
FLQNGVVSIMYRKREIEKYINGCIASGGREVFSSPSIRTFSLPIL
Sbjct: 1336 SYILRRSYSYISRNRFLQNGVVSIMYRKREIEKYINGCIASGGREVFSSPSIRTFSLPIL 1515
Query: 241 KRASHYVELLRGRLLSGDRTNIPIYGQRESHKDDEPSALNRSDSGSTAASRSGSNNRNEE 300
KRASHYVELLRGRLLSGDRTNIPIYGQRESHKDDEPSALNRSDSGSTAASRSGSNNRNEE
Sbjct: 1516 KRASHYVELLRGRLLSGDRTNIPIYGQRESHKDDEPSALNRSDSGSTAASRSGSNNRNEE 1695
Query: 301 VSIRKKCAPSGSSQRERRTNSSLPXXXXXXXXXXXXXXLLVSKETAYRVYQEEGENGTTI 360
VSIRKKCAPSGSSQRERRTNSSLP LLVSKETAYRVYQEEGENGTTI
Sbjct: 1696 VSIRKKCAPSGSSQRERRTNSSLPEYMYRAYEEEYERRLLVSKETAYRVYQEEGENGTTI 1875
Query: 361 TIIVQDGSVHKGTPSHSDTKREKVNSYIKESIEKIINRNTCGGCGSKVPSNVLSNSLKGL 420
TIIVQDGSVHKGTPSHSDTKREKVNSYIKESIEKIINRNTCGGCGSKVPSNVLSNSLKGL
Sbjct: 1876 TIIVQDGSVHKGTPSHSDTKREKVNSYIKESIEKIINRNTCGGCGSKVPSNVLSNSLKGL 2055
Query: 421 SVYNSPNVFLGIEACDDCCIFVHSKSKRGEESPALVQTIDFFKSFIDDEYILGEIIAIHC 480
SVYNSPNVFLGIEACDDCCIFVHSKSKRGEESPALVQTIDFFKSFIDDEYILGEIIAIHC
Sbjct: 2056 SVYNSPNVFLGIEACDDCCIFVHSKSKRGEESPALVQTIDFFKSFIDDEYILGEIIAIHC 2235
Query: 481 LSDVYSMGGTGICALCVLIVKDNIEKKLQQRLQNILTGCCQKLKEEKCVLSGGHTCAGNE 540
LSDVYSMGGTGICALCVLIVKDNIEKKLQQRLQNILTGCCQKLKEEKCVLSGGHTCAGNE
Sbjct: 2236 LSDVYSMGGTGICALCVLIVKDNIEKKLQQRLQNILTGCCQKLKEEKCVLSGGHTCAGNE 2415
Query: 541 NYVGLAVTGK 550
NYVGLAVTGK
Sbjct: 2416 NYVGLAVTGK 2445
Score = 535 bits (1377), Expect = e-152, Method: Composition-based stats.
Identities = 262/262 (100%), Positives = 262/262 (100%)
Frame = +1
Query: 550 KENYLFLPKGSGSVKAGDIIITTKMFGFGFIMAAHICKKAKARWIYICLDEMLLSNRKSG 609
KENYLFLPKGSGSVKAGDIIITTKMFGFGFIMAAHICKKAKARWIYICLDEMLLSNRKSG
Sbjct: 2662 KENYLFLPKGSGSVKAGDIIITTKMFGFGFIMAAHICKKAKARWIYICLDEMLLSNRKSG 2841
Query: 610 LYLLQNNNAKACTDVTGFGILGHLNEMIKCSRREIYFASHMKKKSLHTTSQRKILEGRNK 669
LYLLQNNNAKACTDVTGFGILGHLNEMIKCSRREIYFASHMKKKSLHTTSQRKILEGRNK
Sbjct: 2842 LYLLQNNNAKACTDVTGFGILGHLNEMIKCSRREIYFASHMKKKSLHTTSQRKILEGRNK 3021
Query: 670 RMDDGENDQVKEPPMNLIGAKINLKSFIVAEGVEECIENNIFSSMYKKNHYLCNNIINLE 729
RMDDGENDQVKEPPMNLIGAKINLKSFIVAEGVEECIENNIFSSMYKKNHYLCNNIINLE
Sbjct: 3022 RMDDGENDQVKEPPMNLIGAKINLKSFIVAEGVEECIENNIFSSMYKKNHYLCNNIINLE 3201
Query: 730 EASLSERYGLLFDPQTSGGLMAIVERERAHQILADLKNMGYSNCSAVGEIINVQDYKFKG 789
EASLSERYGLLFDPQTSGGLMAIVERERAHQILADLKNMGYSNCSAVGEIINVQDYKFKG
Sbjct: 3202 EASLSERYGLLFDPQTSGGLMAIVERERAHQILADLKNMGYSNCSAVGEIINVQDYKFKG 3381
Query: 790 VPINQVSLDDYLDTTNSVYIEC 811
VPINQVSLDDYLDTTNSVYIEC
Sbjct: 3382 VPINQVSLDDYLDTTNSVYIEC 3447
>Plasmodium_knowlesi_strain_H|PK4.chr03|PKH_030600|Annotation|Plasmodi
um_knowlesi_Sanger|(protein coding) Sporozoite protein
with MAC/Perforin domain
Length = 2535
Score = 31.2 bits (69), Expect = 1.0, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +1
Query: 410 SNVLSNSLKGLSVYNSPNVFLGIEACDDCCIFVHSKSKRGEESPALVQTIDFFKSF 465
+ N++ GL P F+G+EA +C V+ + K EE ++ I FFK++
Sbjct: 1159 TTAFKNAVDGL-----PPHFIGLEAESECASDVYEQKKTSEECESVHAWITFFKTY 1311
>Plasmodium_knowlesi_strain_H|PK4.chr13|PKH_133400|Annotation|Plasmo
dium_knowlesi_Sanger|(protein coding) hypothetical
protein, conserved in Plasmodium species
Length = 1908
Score = 28.5 bits (62), Expect = 6.5, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +1
Query: 517 TGCCQKLKEEKCVLSGGHTCAGNENYVGLAVTGKENYLFLPKGSGSVKAGDIIITTKM 574
T C + +EEK ++ G NEN + K+ + S +A DI++TT M
Sbjct: 607 TSCVKFAEEEKRNMNNGRWFGNNENQTNIPRRCKDQVMLPYSSSKDNEAADILLTTPM 780
>Plasmodium_knowlesi_strain_H|PK4.chr03|PKH_030040|Annotation|Plasmo
dium_knowlesi_Sanger|(protein coding) thioredoxin-like
protein
Length = 1449
Score = 28.5 bits (62), Expect = 7.6, Method: Composition-based stats.
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +1
Query: 704 ECIENNIFSSMYKKNHYLC 722
EC +NNI SS KK YLC
Sbjct: 307 ECEQNNIMSSRRKKKMYLC 363
Database: cds.fa
Posted date: Mar 7, 2008 5:38 PM
Number of letters in database: 11,140,562
Number of sequences in database: 5106
Lambda K H
0.318 0.136 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 5106
Number of Hits to DB: 10,563,992
Number of extensions: 168745
Number of successful extensions: 1103
Number of sequences better than 10.0: 15
Number of HSP's gapped: 1101
Number of HSP's successfully gapped: 16
Length of query: 811
Length of database: 3,713,520
Length adjustment: 100
Effective length of query: 711
Effective length of database: 3,202,920
Effective search space: 2277276120
Effective search space used: 2277276120
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 43 (21.2 bits)
