genewise $Name: wise2-2-0 $ (unreleased release)
This program is freely distributed under a GPL. See source directory
Copyright (c) GRL limited: portions of the code are from separate copyright
Query protein: SPP00000032_1.0
Comp Matrix: blosum62.bla
Gap open: 12
Gap extension: 2
Start/End global
Target Sequence subseq(408356,3031)
Strand: forward
Start/End (protein) global
Gene Paras: human.gf
Codon Table: codon.table
Subs error: 1e-05
Indel error: 1e-05
Model splice? model
Model codon bias? flat
Model intron bias? tied
Null model syn
Algorithm 623
genewise output
Score -6.58 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
SPP00000032_1.0 1 MSTRESFNPESYELDKSFRLTRFTELKGTGCKVPQDVLQKLLESLQENH
+ RE N SY + ++ G G KVP +VL L+ L
DTKREKVN--SYIKESIEKIINRNTCGGCGSKVPSNVLSNSLKGLSV--
subseq(408356,3 1003 gaaagaga ttaagaagaaaacaatggtgtagctagctattagttg
acagaata cataagtaattagacgggggcatccattcactagtct
tagaagat attaatcgaatcatataataagttattagtagacatg
SPP00000032_1.0 50 FQEDEQFLGAVMPRLGIGMDTCVI---PLRHGGLS--LVQTTDYIYPIV
+ FLG + D C++ + G S LVQT D++ ++
YNSPNVFLG-----IEACDDCCIFVHSKSKRGEESPALVQTIDFFKSFI
subseq(408356,3 1138 tatcagtcg aggtggttatgcaataagggacgcgcaagttatta
aaccatttg tacgaaggtttagacaggaagccttactattactt
ccaatgcaa taattcccatattatagaaactatcaaattcaatc
SPP00000032_1.0 94 DDPYMMGRIACANVLSDLYAMGVTECDNMLMLLGVSNKMTDRERDKVMP
DD Y++G I + LSD+Y+MG T + +L+ N +++ + +
DDEYILGEIIAIHCLSDVYSMGGTGICALCVLIVKDN--IEKKLQQRLQ
subseq(408356,3 1270 gggtatggaagactttggtaaggagatgttgcagaga agaacccatc
aaaattgattctagtcatagtggcgtgctgttttaaa taaataagta
ttataagaatctttattgccgaaaactcgcagtggtc tgggaagaag
SPP00000032_1.0 143 LIIQGFKDAAEEAGTSVTGGQTVLNPWIVLGGVATTVCQ
I+ G +E ++GG T +G T
NILTGCCQKLKEEKCVLSGGHTCAGNENYVGLAVTG--K
subseq(408356,3 1411 aatagttcataggatgtaggcatggagatggtggag a
attcgggaataaaagttgggacgcgaaaatgtctcg a
ttatgtcgggaggatcgtgttctgatgttctgacga g
SPP00000032_1.0 182 PNEFIMPDNA---VPGDVLVLTKPLG
N +++P + GD+++ TK G
ENYLFLPKGSGSVKAGDIIITTKMFG
subseq(408356,3 1522 GTGAAAA Intron 1 AAGgatctccagagagagggaaaaaaatg
<0-----[1522 : 1740]-0>aaatttcaggggtacgatttccattg
atcacacgacataggtcaatcaagcc
SPP00000032_1.0 205 TQVAVAVHQWLDIPEKWNKIKLVVTQEDVELAYQEAMMNMARLNRTAAG
+A H +W + + +++ L+ +++ + + + N
FGFIMAAHICKKAKARW----IYICLDEMLLSNRKSGLYLLQNN-----
subseq(408356,3 1819 tgtaaggcataagagat atatcggacctaaaagttctcaa
tgtttccatgaacacgg tatgtaatttcagaggtattaaa
ccccgtatatagcatag tcccttagccatggtgactgatt
SPP00000032_1.0 254 LMHTFNAHAATDITGFGILGHAQNLAKQQRNEVSFVIHNLPVLAKMAAV
NA A TD+TGFGILGH + K R E+ F H +
-----NAKACTDVTGFGILGHLNEMIKCSRREIYFASHMKKKSLHTTSQ
subseq(408356,3 1939 agagtaggagtgacgccagaaattaagattgtcaaaatccaatc
acacgcatcgtgttgataattagcggatatccataaactaccca
ttatcctatgtacaccgcagcactggattttatgagacgcaaaa
SPP00000032_1.0 303 SKAC-GNMFGLMHGTCPE TSGGLLIC
K G + G + TSGGL+
RKILEGRNKRMDDGENDQ TSGGLMAI
subseq(408356,3 2071 aaacggaaaaaggggagcGTGAAGG Intron 2 CAGaaggcaga
gattaggaagtaagaaaa<0-----[2125 : 2322]-0>cgggttct
ggatagataagttaatcg ctgccgct
SPP00000032_1.0 328 LPREQAARFCAEIKSPKYGEGHQAWIIGIVEKGNRTARIIDKPRIIEVA
+ RE+A ++ A++K+ Y I V+ I+
VERERAHQILADLKNMGYSNCSAVGEIINVQDYKFKGVPIN--------
subseq(408356,3 2347 ggagagccatggtaaagttattggggaaagcgtataggcaa
tagagcaattcataatgacagcctgattataaaatagtcta
gagggccataacagcggccctcaagatatgattgtggacat
SPP00000032_1.0 377 PQVATQNVNPTPGATSX
QV+ + T +
-QVSLDDYLDTTNSVYI
subseq(408356,3 2470 cgttggttgaaatgta
atctaaataccactat
gttgcttgcggttgta
//
Gene 1
Gene 1003 2517
Exon 1003 1521 phase 0
Exon 1741 2124 phase 0
Exon 2323 2517 phase 0
//
>subseq(408356,3031).[1003:2517].sp.tr
DTKREKVNSYIKESIEKIINRNTCGGCGSKVPSNVLSNSLKGLSVYNSPNVFLGIEACDD
CCIFVHSKSKRGEESPALVQTIDFFKSFIDDEYILGEIIAIHCLSDVYSMGGTGICALCV
LIVKDNIEKKLQQRLQNILTGCCQKLKEEKCVLSGGHTCAGNENYVGLAVTGKENYLFLP
KGSGSVKAGDIIITTKMFGFGFIMAAHICKKAKARWIYICLDEMLLSNRKSGLYLLQNNN
AKACTDVTGFGILGHLNEMIKCSRREIYFASHMKKKSLHTTSQRKILEGRNKRMDDGEND
QTSGGLMAIVERERAHQILADLKNMGYSNCSAVGEIINVQDYKFKGVPINQVSLDDYLDT
TNSVYI
//
>subseq(408356,3031).[1003:2517].sp
GATACAAAGAGAGAAAAGGTAAATTCATATATTAAAGAAAGTATCGAGAAAATAATTAAC
CGAAATACATGTGGAGGATGTGGATCAAAGGTTCCTTCAAATGTTCTATCGAATTCATTG
AAAGGCTTATCTGTGTACAACTCACCAAATGTGTTCCTAGGAATTGAAGCATGTGATGAC
TGCTGCATATTTGTACATAGTAAATCTAAAAGGGGAGAAGAAAGCCCTGCACTTGTCCAA
ACAATAGATTTTTTCAAATCATTTATCGATGATGAATATATATTAGGGGAAATAATTGCC
ATTCATTGTTTATCTGATGTGTACAGCATGGGAGGAACAGGAATCTGTGCCTTGTGCGTA
CTGATTGTGAAGGATAACATTGAGAAGAAGCTACAACAGAGATTACAGAATATTTTAACT
GGGTGTTGCCAGAAGTTGAAAGAGGAGAAATGTGTCTTGAGTGGGGGTCATACCTGTGCG
GGAAATGAGAATTATGTCGGTTTGGCAGTCACGGGAAAGGAAAATTACCTATTCCTACCC
AAGGGAAGCGGAAGTGTAAAGGCGGGTGACATAATAATTACCACAAAAATGTTCGGCTTC
GGCTTCATCATGGCTGCACATATATGTAAAAAGGCCAAAGCTAGATGGATTTACATCTGC
CTTGATGAAATGCTCCTCTCAAATAGGAAGAGTGGGTTATACCTTTTGCAAAATAATAAT
GCTAAAGCTTGCACCGATGTAACTGGGTTTGGAATCCTAGGCCACCTGAACGAAATGATC
AAATGCTCTAGGAGGGAAATTTATTTTGCTTCACATATGAAAAAGAAATCCCTGCACACA
ACATCACAAAGGAAGATACTTGAAGGGAGAAATAAAAGAATGGATGATGGAGAAAATGAC
CAGACCAGTGGGGGCCTCATGGCCATTGTGGAAAGGGAGAGGGCCCACCAAATTTTAGCA
GACTTAAAGAACATGGGGTACTCCAACTGTTCCGCAGTAGGGGAAATTATAAATGTGCAA
GATTATAAGTTTAAGGGGGTACCCATAAATCAGGTTTCTTTGGACGATTATTTGGACACG
ACGAATTCTGTGTATATA
//
