genewise $Name: wise2-2-0 $ (unreleased release)
This program is freely distributed under a GPL. See source directory
Copyright (c) GRL limited: portions of the code are from separate copyright
Query protein: ref_NP_473214.1_hypothetical
Comp Matrix: blosum62.bla
Gap open: 12
Gap extension: 2
Start/End global
Target Sequence subseq(1455000,5000)
Strand: forward
Start/End (protein) global
Gene Paras: human.gf
Codon Table: codon.table
Subs error: 1e-05
Indel error: 1e-05
Model splice? model
Model codon bias? flat
Model intron bias? tied
Null model syn
Algorithm 623
genewise output
Score 250.09 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
ref_NP_473214.1 1 MKKEIIVDVKSNPRTHTNGDK---DIIREKQKKLKKKNENVK
+ K H GD ++RE ++K ++NE K
VLLPYSCRDKIGLPPHDAGDFFHFSLFRE!KEKPSRRNEKRK
subseq(1455000, 32 gtcctatagaagccccggggttcttctcg2agactcaagaca
tttcagggaatgtccaacgattatcttga aaaccggaaaga
tgaatttacaaccgctttttttttccctg agacgagtaaaa
ref_NP_473214.1 40 SINANANANVNVENRKNVENRKC
+N + ++ R N
V:V[gtt] QMNGRSERIPHL-GRSNPPEGPM
subseq(1455000, 157 GGTGAAAT Intron 1 CAGTTcaagctgaaccc gaaaccggca
<1-----[158 : 173]-1> ataggcagtcat gggaccagct
ggctctggtccg gacctggagg
ref_NP_473214.1 64 IKNIKSIKNIKNAKHIKNIKSIKYYDDRKKEEKTYQTKNTNNNIQFGNR
K + K IK R+ + T Q ++Q+G+R
KHPSKKVVQKKMETQIK----------RRDDNTTKQ-----RHMQIGDR
subseq(1455000, 242 acctaaggcaaagacaa caggaaaac acacagga
aaccaattaaatacata ggaaaccaa gatatgag
gcttaaaagaagacata aacctcaag acggcata
ref_NP_473214.1 113 LVRITFSSDKKKRKELIKKKKMNILMKQKKKKRKEFEEKKKLINKLTNI
+V+I F+SDKKKRKE K+K++N+L+ QK+KK+KEFE+KKK++ K+ N+
VVKIIFTSDKKKRKEQKKRKEINMLISQKRKKKKEFEKKKKMVRKMNNM
subseq(1455000, 344 ggaaataagaaaaagcaaaagaaacaacaaaaaagtgaaaaagcaaaaa
ttatttcgaaaagaaaaagaatatttgaagaaaaataaaaattgataat
tgaccccttgaaggaaaaaaattgcataaaaaaaataagaggctggtcg
ref_NP_473214.1 162 LNVEKEKGNYYFLPKCLKKKKISKLKKIIILEKKIKNDIYQELLKQKEN
+ E+EKGN YFLPK + KK +K KK+I+LEK++K +Y +LL++ +N
IRTEREKGNVYFLPKKFRPKKKTKRKKLILLEKEVKQSVYNDLLRETQN
subseq(1455000, 491 aaagcgagagtttcaatccaaaaacaacatcgaggacagtagtcagaca
tgcagaagatattcaatgcaaacagaattttaaataagtaaattgacaa
tgaagaactgttaaaataaaaacggggtcgcggaagatcctcaggatat
ref_NP_473214.1 211 INSINDHHTGIYLQLIQNKRKWILKNKKVKKIIITNNSNNNNNNDNNNN
S I L+ ++ K K +K I + D+ N
GGSRGQ--LKITLRHMERLSK-CSKEGYIKFIARKVRCRAMGHTDSANY
subseq(1455000, 638 ggtagc caaacccagatta taaggtaatagaagatagagcagtgat
ggcgga tatctgatagtca ggaagatattcgatgggctgacaccaa
atcgga caaatctggaaaa tcaaccaatttaaggcatgacctttct
ref_NP_473214.1 260 NDNNNNDNNNNNNNNIKFASNFLKKLAKTENVLNGELPDVQVKNLKKFI
++ L+ A T +++ +V +++F+
RWGEMKKEERRRRDS--WDGQHLEG-ASTSAMVDETKIGEEVARVRRFL
subseq(1455000, 776 atggaaaggcaacgt tggcctgg gtaagagggaaagggggcgaatc
gggataaaaggggac gagaatag cccgcttaacatgaatcgtggtt
agtagaggaagatta gttgtgaa ccttagttaaaataatccgagtt
ref_NP_473214.1 309 HTWANKYATGLRKGKKYGRKRDIRQLINVAKKIEKYSDQNDNLHLKDKR
W K+ G G KR + + I K ++
LLWGGKFPRG-------GVKRS-----GIDESIRKDAE-----------
subseq(1455000, 914 cctggatcag ggaaa gaggtacaggg
ttgggatcgg gtagg gtaactgaaca
cgggtacaaa tggat gctaataacga
ref_NP_473214.1 358 VSSKNNICSVENFDKNNVVNVKEKKKKNSDTIERNEHNICNHNNNNNNN
+E + VN E + D + R +
---------IETPQCADSVNPSEAEHDEGDLVNREK-------------
subseq(1455000, 992 agacctggagacagggcggggcgaaga
taccagcagtacgacaaaagattagaa
taccacatcccctgaattggtcccgaa
ref_NP_473214.1 407 NNNNNNHNNNNNNNNNHNNNNNNNNGDNKNNNIIDVNHILKDEMLKNEK
+K+ +LKNEK
---------------------------------------IKERILKNEK
subseq(1455000, 1073 aagcacaaga
taagttaaaa
aaactcgcaa
ref_NP_473214.1 456 ILNYIQVSRVEKKIYINDYVDHEITVKLNTMVKEFLKKISVSHEKLLLL
I+NYI+ ++V+KK Y+N+YVD IT +LN MVK FL+KIS S EKL LL
IMNYIKTTKVQKKTYLNEYVDQVITEELNNMVKSFLEKISKSQEKLFLL
subseq(1455000, 1103 aaataaaaagcaaatcagtggcgaaggcaaagatttgaatatcgacttc
ttaataccataaacataaataattcaataattacttaatcacaaatttt
tgccaaccagaaagctcgtatgaagggattgtaatgaatcaggaagtag
ref_NP_473214.1 505 -KKKKRYFLGLKECYKHICIDEPKIVFIAPNIEPSLNNIFDDTLGKIIA
KKKKRY+LGL+E Y+HICID PK+V++APNIEP N +FDD + KII
RKKKKRYYLGLRESYRHICIDNPKLVLLAPNIEPMTNGVFDDQVNKIIC
subseq(1455000, 1250 aaaaaatttgccgatacatagacatgctgcaagcaaaggtggcgaaaat
gaaaagaatgtgagagatgtaacattttccatactcagttaaataattg
aaagagccgttggtcgcttaccgggttgggctaagacggctcggtaatc
ref_NP_473214.1 553 KCKEKNIPIVFALSKNLLGKCINKSRQSIICIIDNDSYIKECNDIINLA
KC+EK IP+V+ALSKNLLGKCI KSRQS+ICI+DNDSYI+EC +I+ LA
KCREKGIPLVYALSKNLLGKCIKKSRQSVICIVDNDSYIRECEEIVRLA
subseq(1455000, 1397 atcgagactgtgtaaatcgataaatacagataggagttaagtggagatg
aggaagtcttactgaattgagtaacgagttgttaaacatgagaattgtc
gtgagcacgcttacgcgctactaatggctactacccccaggcagtggga
ref_NP_473214.1 602 NSLKLCK
NSL+
NSLRRHA
subseq(1455000, 1544 atcaccg
actggac
ctcgttt
//
Gene 1
Gene 32 118
Exon 32 118 phase 0
Gene 2
Gene 121 1564
Exon 121 157 phase 0
Exon 174 1564 phase 1
//
>subseq(1455000,5000).[32:118].sp.tr
VLLPYSCRDKIGLPPHDAGDFFHFSLFRE
>subseq(1455000,5000).[121:1564].sp.tr
KEKPSRRNEKRKVQMNGRSERIPHLGRSNPPEGPMKHPSKKVVQKKMETQIKRRDDNTTK
QRHMQIGDRVVKIIFTSDKKKRKEQKKRKEINMLISQKRKKKKEFEKKKKMVRKMNNMIR
TEREKGNVYFLPKKFRPKKKTKRKKLILLEKEVKQSVYNDLLRETQNGGSRGQLKITLRH
MERLSKCSKEGYIKFIARKVRCRAMGHTDSANYRWGEMKKEERRRRDSWDGQHLEGASTS
AMVDETKIGEEVARVRRFLLLWGGKFPRGGVKRSGIDESIRKDAEIETPQCADSVNPSEA
EHDEGDLVNREKIKERILKNEKIMNYIKTTKVQKKTYLNEYVDQVITEELNNMVKSFLEK
ISKSQEKLFLLRKKKKRYYLGLRESYRHICIDNPKLVLLAPNIEPMTNGVFDDQVNKIIC
KCREKGIPLVYALSKNLLGKCIKKSRQSVICIVDNDSYIRECEEIVRLANSLRRHA
//
>subseq(1455000,5000).[32:118].sp
GTTTTGCTACCATATAGTTGTAGAGACAAAATAGGCCTCCCGCCCCATGATGCTGGTGAT
TTTTTTCATTTTTCCCTCTTCCGTGAG
>subseq(1455000,5000).[121:1564].sp
AAAGAGAAACCCTCGCGAAGGAATGAAAAACGAAAAGTTCAGATGAACGGTCGCTCTGAG
AGGATTCCCCACCTGGGGAGAAGCAACCCTCCGGAGGGACCGATGAAGCACCCTTCTAAA
AAAGTAGTACAGAAAAAAATGGAAACCCAAATTAAACGAAGAGACGACAATACCACAAAA
CAGAGACACATGCAGATCGGAGATAGAGTTGTGAAAATCATCTTCACCAGTGATAAGAAA
AAAAGGAAGGAACAAAAAAAAAGAAAAGAAATTAATATGCTCATAAGTCAAAAAAGAAAA
AAAAAAAAAGAATTTGAAAAAAAGAAAAAGATGGTCCGTAAGATGAATAACATGATTAGG
ACAGAACGGGAAAAAGGCAATGTGTATTTTTTACCAAAAAAATTTCGACCAAAAAAAAAA
ACCAAGCGGAAGAAGCTTATCTTGCTCGAGAAGGAAGTAAAGCAAAGTGTCTACAATGAC
TTACTGAGGGAAACTCAAAATGGAGGTTCCAGGGGGCAACTCAAAATAACACTTCGCCAT
ATGGAGAGATTATCAAAATGTAGCAAAGAAGGCTACATAAAATTTATTGCTAGAAAAGTG
AGGTGCAGAGCTATGGGACACACCGATTCTGCTAACTATAGATGGGGTGAAATGAAAAAG
GAGGAACGAAGGAGACGTGATTCATGGGATGGTCAGCATTTGGAAGGAGCCTCCACTAGT
GCAATGGTTGATGAAACAAAAATAGGTGAAGAAGTTGCCCGCGTGAGAAGGTTTCTTCTC
CTGTGGGGGGGTAAATTCCCAAGAGGAGGTGTGAAGAGAAGTGGGATCGATGAATCAATT
CGAAAAGACGCGGAAATTGAAACCCCCCAATGCGCAGATAGCGTCAACCCCAGTGAGGCA
GAACATGATGAGGGGGATCTCGTCAACAGGGAAAAAATAAAAGAACGCATTCTCAAGAAC
GAAAAAATTATGAACTACATAAAAACCACCAAAGTGCAAAAAAAAACGTACCTTAACGAG
TATGTAGATCAGGTAATAACGGAGGAGCTAAATAATATGGTTAAATCATTTTTGGAAAAA
ATTTCCAAATCGCAGGAAAAACTGTTTTTACTGAGAAAAAAAAAGAAAAGGTACTACTTG
GGTCTTCGGGAGAGTTACAGGCACATTTGTATAGACAACCCGAAGTTGGTTCTTTTGGCG
CCGAACATTGAACCAATGACAAACGGGGTGTTCGATGACCAGGTGAATAAAATAATTTGC
AAGTGTCGGGAAAAGGGCATACCCTTGGTCTATGCTTTAAGCAAGAACTTGCTCGGTAAA
TGCATTAAAAAATCTAGGCAGAGCGTTATATGCATTGTAGACAACGACTCCTACATAAGG
GAGTGCGAAGAGATTGTGAGGTTGGCAAACTCTCTCAGGCGTCATGCT
//
