TBLASTN 2.2.17 [Aug-26-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= ref_NP_473214.1_hypothetical protein_Pfalciparum
(608 letters)
Database: genoma.fa
14 sequences; 23,462,190 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Plasmodium_knowlesi_strain_H|PK4.chr02|2007-02-22|ds-DNA|Plasmod... 183 3e-46
Plasmodium_knowlesi_strain_H|PK4.chr09|2007-02-22|ds-DNA|Plasmod... 37 0.042
Plasmodium_knowlesi_strain_H|PK4.chr12.pseudo|2007-02-22|ds-DNA|... 33 0.57
Plasmodium_knowlesi_strain_H|PK4.chr05|2007-02-22|ds-DNA|Plasmod... 32 1.1
Plasmodium_knowlesi_strain_H|PK4.chr07|2007-02-22|ds-DNA|Plasmod... 31 2.0
Plasmodium_knowlesi_strain_H|chr10|2007-02-22|ds-DNA|Plasmodium_... 31 2.4
Plasmodium_knowlesi_strain_H|PK4.chr11.pseudo.embl|2007-02-22|ds... 30 3.9
Plasmodium_knowlesi_strain_H|PK4.chr06|2007-02-22|ds-DNA|Plasmod... 29 7.4
Plasmodium_knowlesi_strain_H|PK4.chr01|2007-02-22|ds-DNA|Plasmod... 29 8.5
>Plasmodium_knowlesi_strain_H|PK4.chr02|2007-02-22|ds-
DNA|Plasmodium_knowlesi_Sanger
Length = 1770351
Score = 183 bits (464), Expect = 3e-46, Method: Composition-based stats.
Identities = 106/161 (65%), Positives = 136/161 (84%), Gaps = 1/161 (0%)
Frame = +2
Query: 446 LKDEMLKNEKILNYIQVSRVEKKIYINDYVDHEITVKLNTMVKEFLKKISVSHEKLLLLK 505
+K+ +LKNEKI+NYI+ ++V+KK Y+N+YVD IT +LN MVK FL+KIS S EKL LL+
Sbjct: 1456073 IKERILKNEKIMNYIKTTKVQKKTYLNEYVDQVITEELNNMVKSFLEKISKSQEKLFLLR 1456252
Query: 506 KKKR-YFLGLKECYKHICIDEPKIVFIAPNIEPSLNNIFDDTLGKIIAKCKEKNIPIVFA 564
KKK+ Y+LGL+E Y+HICID PK+V +APNIEP N +FDD + KII KC+EK IP+V+A
Sbjct: 1456253 KKKKRYYLGLRESYRHICIDNPKLVLLAPNIEPMTNGVFDDQVNKIICKCREKGIPLVYA 1456432
Query: 565 LSKNLLGKCINKSRQSIICIIDNDSYIKECNDIINLANSLK 605
LSKNLLGKCI KSRQS+ICI+DNDSYI+EC +I+ LANSL+
Sbjct: 1456433 LSKNLLGKCIKKSRQSVICIVDNDSYIRECEEIVRLANSLR 1456555
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 59/124 (47%), Positives = 94/124 (75%), Gaps = 4/124 (3%)
Frame = +2
Query: 91 RKKEEKTYQTKNTNN----NIQFGNRLVRITFSSDKKKRKELIKKKKMNILMKQKKKKRK 146
+KK E + ++ N ++Q G+R+V+I F+SDKKKRKE K+K++N+L+ QK+KK+K
Sbjct: 1455266 QKKMETQIKRRDDNTTKQRHMQIGDRVVKIIFTSDKKKRKEQKKRKEINMLISQKRKKKK 1455445
Query: 147 EFEEKKKLINKLTNILNVEKEKGNYYFLPKCLKKKKISKLKKIIILEKKIKNDIYQELLK 206
EFE+KKK++ K+ N++ E+EKGN YFLPK + KK +K KK+I+LEK++K +Y +LL+
Sbjct: 1455446 EFEKKKKMVRKMNNMIRTEREKGNVYFLPKKFRPKKKTKRKKLILLEKEVKQSVYNDLLR 1455625
Query: 207 QKEN 210
+ +N
Sbjct: 1455626 ETQN 1455637
Score = 33.9 bits (76), Expect = 0.28, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 38/82 (46%)
Frame = +3
Query: 361 KNNICSVENFDKNNVVNVKEKKKKNSDTIERNEHNICNHNNNNNNNNNNNNNHNNNNNNN 420
K+N + +N +N N + + RN++ ++ N N N+N N N N+N
Sbjct: 108027 KSNTITNDNTRNDNTRNDSTRNDNTRNDNTRNDNTRNDNTRNENTRNDNTRNENTRNDNT 108206
Query: 421 NNHNNNNNNNNGDNKNNNIIDV 442
N N N+N D N+ +++
Sbjct: 108207 RNENTRNDNTRNDAFKNHPMNI 108272
Score = 32.7 bits (73), Expect = 0.58, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 35/85 (41%)
Frame = +3
Query: 353 LKDKRVSSKNNICSVENFDKNNVVNVKEKKKKNSDTIERNEHNICNHNNNNNNNNNNNNN 412
+ ++ + + +CS + N + +N T N N N+N N+N N N
Sbjct: 107979 VDNRSANCDSEMCSAMKSNTITNDNTRNDNTRNDSTRNDNTRNDNTRNDNTRNDNTRNEN 108158
Query: 413 HNNNNNNNNNHNNNNNNNNGDNKNN 437
N+N N N N+N N +N
Sbjct: 108159 TRNDNTRNENTRNDNTRNENTRNDN 108233
Score = 32.7 bits (73), Expect = 0.65, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 36/71 (50%)
Frame = +3
Query: 366 SVENFDKNNVVNVKEKKKKNSDTIERNEHNICNHNNNNNNNNNNNNNHNNNNNNNNNHNN 425
SV+N N + K N+ T + ++ +++ N+N N+N N+N N+N N
Sbjct: 107976 SVDNRSANCDSEMCSAMKSNTITNDNTRNDNTRNDSTRNDNTRNDNTRNDNTRNDNTRNE 108155
Query: 426 NNNNNNGDNKN 436
N N+N N+N
Sbjct: 108156 NTRNDNTRNEN 108188
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Frame = -1
Query: 369 NFDKNNVVNVKEKKKK-NSDTIERNEHNIC--NHNNNNNNNNNNNNNHNNNNNNNNNHNN 425
N +KN N++ + N ++ N+ NI NH N N N N +NN N+ N
Sbjct: 665526 NDNKNGRNNMENGRNSFNMHEMKMNDVNIMYGNHEKENATNMVNGNYVDNNTGNSENSYK 665347
Query: 426 NNNNNNGDNKNN 437
N NN+ G + NN
Sbjct: 665346 NENNSGGSHLNN 665311
Score = 29.3 bits (64), Expect = 7.2, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 34/85 (40%)
Frame = +3
Query: 353 LKDKRVSSKNNICSVENFDKNNVVNVKEKKKKNSDTIERNEHNICNHNNNNNNNNNNNNN 412
+K +++ N D N + +N +T N N N+N N N N+N
Sbjct: 108024 MKSNTITNDNTRNDNTRNDSTRNDNTRNDNTRNDNTRNDNTRNENTRNDNTRNENTRNDN 108203
Query: 413 HNNNNNNNNNHNNNNNNNNGDNKNN 437
N N N+N N+ N+ N N
Sbjct: 108204 TRNENTRNDNTRNDAFKNHPMNIAN 108278
Score = 28.9 bits (63), Expect = 8.0, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 51 NVENRKNVENRKCIKNIKSIKNIKNAKHIKNIKS 84
+V RKNV KC+K +S++ KN K +KS
Sbjct: 617669 SVRTRKNVRTTKCVKGERSVRTRKNVSARKGVKS 617770
Score = 28.9 bits (63), Expect = 8.7, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 52 VENRKNVENRKCIKNIKSIKNIKNAKHIKNIKSIKYYDDRK 92
V NRK V KC+K +S++ KN + K +K + RK
Sbjct: 617618 VRNRKYVRTTKCVKGERSVRTRKNVRTTKCVKGERSVRTRK 617740
>Plasmodium_knowlesi_strain_H|PK4.chr09|2007-02-22|ds-
DNA|Plasmodium_knowlesi_Sanger
Length = 2147124
Score = 36.6 bits (83), Expect = 0.042, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 34/56 (60%)
Frame = -1
Query: 383 KKNSDTIERNEHNICNHNNNNNNNNNNNNNHNNNNNNNNNHNNNNNNNNGDNKNNN 438
K N ++ +++ N N N+ N+N+ N+N ++N N+N ++N N+N G++ N
Sbjct: 153990 KDNGNSNDKSSDNSGNDNSGNDNSGNDNRGNDNRGNDNRGNDNRGNDNRGNDNRGN 153823
Score = 36.2 bits (82), Expect = 0.051, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 38/61 (62%)
Frame = -1
Query: 376 VNVKEKKKKNSDTIERNEHNICNHNNNNNNNNNNNNNHNNNNNNNNNHNNNNNNNNGDNK 435
+ +E++ ++D + N + N N+ +++N+ N+N+ N+N+ N+N N+N N+N N
Sbjct: 154044 IRSQEEEPTSNDALHPNGKDNGNSNDKSSDNSGNDNSGNDNSGNDNRGNDNRGNDNRGND 153865
Query: 436 N 436
N
Sbjct: 153864 N 153862
Score = 35.4 bits (80), Expect = 0.094, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 30/60 (50%)
Frame = -1
Query: 377 NVKEKKKKNSDTIERNEHNICNHNNNNNNNNNNNNNHNNNNNNNNNHNNNNNNNNGDNKN 436
N +K NS N N N N+N N+N ++N N+N ++N N+N+G K+
Sbjct: 153978 NSNDKSSDNSGNDNSGNDNSGNDNRGNDNRGNDNRGNDNRGNDNRGNDNRGNDNSGSEKD 153799
Score = 34.3 bits (77), Expect = 0.20, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 34/61 (55%)
Frame = -1
Query: 377 NVKEKKKKNSDTIERNEHNICNHNNNNNNNNNNNNNHNNNNNNNNNHNNNNNNNNGDNKN 436
N K+ N + + + ++ ++N+ N+N N+N N+N N+N N+N N+N N N
Sbjct: 153996 NGKDNGNSNDKSSDNSGNDNSGNDNSGNDNRGNDNRGNDNRGNDNRGNDNRGNDNRGNDN 153817
Query: 437 N 437
+
Sbjct: 153816 S 153814
Score = 33.1 bits (74), Expect = 0.44, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 33/57 (57%)
Frame = -1
Query: 382 KKKNSDTIERNEHNICNHNNNNNNNNNNNNNHNNNNNNNNNHNNNNNNNNGDNKNNN 438
K+ S E ++ + N +N N+N+ ++ N+ N+N+ N N+ N+N DN+ N+
Sbjct: 154050 KEIRSQEEEPTSNDALHPNGKDNGNSNDKSSDNSGNDNSGNDNSGNDNRGNDNRGND 153880
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = -1
Query: 245 TNNSNNNNNNDNNNNNDNNNNDNNNNNN 272
++NS N+N+ ++N+ NDN NDN N+N
Sbjct: 153960 SDNSGNDNSGNDNSGNDNRGNDNRGNDN 153877
Score = 29.6 bits (65), Expect = 5.8, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = -1
Query: 246 NNSNNNNNNDNNNNNDNNNNDNNNNNN 272
+NS N+N+ ++N NDN NDN N+N
Sbjct: 153942 DNSGNDNSGNDNRGNDNRGNDNRGNDN 153862
Score = 29.3 bits (64), Expect = 7.3, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -1
Query: 246 NNSNNNNNNDNNNNNDNNNNDNNNNNN 272
+NS N+N ++N NDN NDN N+N
Sbjct: 153927 DNSGNDNRGNDNRGNDNRGNDNRGNDN 153847
Score = 28.9 bits (63), Expect = 7.9, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 21/27 (77%)
Frame = -1
Query: 246 NNSNNNNNNDNNNNNDNNNNDNNNNNN 272
+N N+N+ + +N+ NDN+ NDN+ N+N
Sbjct: 153987 DNGNSNDKSSDNSGNDNSGNDNSGNDN 153907
>Plasmodium_knowlesi_strain_H|PK4.chr12.pseudo|2007-02-22|ds-
DNA|Plasmodium_knowlesi_Sanger
Length = 3128370
Score = 32.7 bits (73), Expect = 0.57, Method: Composition-based stats.
Identities = 28/115 (24%), Positives = 55/115 (47%), Gaps = 4/115 (3%)
Frame = -2
Query: 237 KKVKKIIITNNSNNNNNNDNNNNNDNNNNDNNNNNNNNIKFASNFLKKL----AKTENVL 292
K KK N++++N NNN+ +N ++ NN+ + LK L +E+
Sbjct: 836489 KVAKKGYPGENNHDSNGGKNNNDTSTSNLEDKAKEANNL--TDSILKDLDTVGTASEDEA 836316
Query: 293 NGELPDVQVKNLKKFIHTWANKYATGLRKGKKYGRKRDIRQLINVAKKIEKYSDQ 347
+ + V ++N+KK +H + G K+ K + L+N +K++KY++
Sbjct: 836315 SLDEASVHIRNIKKNMHLMMEQSRNGEEWSKEEAEKA-LSDLVNALRKVKKYTEH 836154
>Plasmodium_knowlesi_strain_H|PK4.chr05|2007-02-22|ds-
DNA|Plasmodium_knowlesi_Sanger
Length = 1324984
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Frame = +1
Query: 365 CSVENFDKNNVVNVKEKKKKNSDTIERNEHNICNHNNNNNNNNNNNNNHNNNNNNNNNHN 424
CS + N VN + ++ + + N + NN + +NN NN +NN
Sbjct: 266572 CSADGVSSANAVNAENRETRVGEVFSEQSSNDAPNRANNQDGSNNRGESNNRGESNNRGE 266751
Query: 425 NNN---NNNNGDNKN 436
+NN +NN G++ N
Sbjct: 266752 SNNRGESNNRGESNN 266796
>Plasmodium_knowlesi_strain_H|PK4.chr07|2007-02-22|ds-
DNA|Plasmodium_knowlesi_Sanger
Length = 1496036
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 27/45 (60%)
Frame = +2
Query: 377 NVKEKKKKNSDTIERNEHNICNHNNNNNNNNNNNNNHNNNNNNNN 421
N KE K N + E N+ N N NN+ ++NN + HN+ +N+NN
Sbjct: 187589 NEKENDKDNDNKEETNKRKSENRNINNHRDSNNGDRHNSEDNSNN 187723
Score = 29.6 bits (65), Expect = 5.2, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = -2
Query: 379 KEKKKKNSDTIERNEHNICNHNNNNNNNNNNNNNHNNNNNNNNNHNNNNNNNNGDNKNNN 438
KE K++ S + + NN N+ +HN+N +NN +N +K NN
Sbjct: 674983 KENKEEVSSYDVEEDPGCSDGGGNNEGNDAKQGDHNSNESNNEEGETETHNEKSKDKQNN 674804
>Plasmodium_knowlesi_strain_H|chr10|2007-02-22|ds-
DNA|Plasmodium_knowlesi_Sanger
Length = 1486039
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Frame = +2
Query: 342 EKYSDQNDNLHLKDKRVSSK---NNICSVENFDKNNVVNVKEKKKKNSDTIERNEHNICN 398
EK+ D N + L D +K + I S + D N + K NS T NE+NIC
Sbjct: 762176 EKHLDGNTTVFLDDGDACNKRTMHTIISRMDSDITNTEDALSKINDNSTTYMSNENNICL 762355
Query: 399 HNNNNNNNNNNNNNHN 414
NN + +++NN N N
Sbjct: 762356 VNNEGDISDDNNFNSN 762403
>Plasmodium_knowlesi_strain_H|PK4.chr11.pseudo.embl|2007-02-22|ds-
DNA|Plasmodium_knowlesi_Sanger
Length = 2372884
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 7/74 (9%)
Frame = +2
Query: 391 RNEHNICNHNN----NNNNNNNNNNNHNNNNNNNNNHNNNNNNNNGDNKNNNIIDVNHIL 446
+ E N+C N+ +NN N N ++ N N N++ N+ +NNNG NN+I +V++ +
Sbjct: 1270079 KGEKNVCRKNSGASMSNNINLNVSDTDLNGNKNSSEKRNSYDNNNGMISNNSINNVDNTV 1270258
Query: 447 ---KDEMLKNEKIL 457
K+ L NE ++
Sbjct: 1270259 AYFKENCLSNENVV 1270300
>Plasmodium_knowlesi_strain_H|PK4.chr06|2007-02-22|ds-
DNA|Plasmodium_knowlesi_Sanger
Length = 1053092
Score = 29.3 bits (64), Expect = 7.4, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = +3
Query: 327 RKRDIRQLINVAKKIEKYSDQNDNLHLKDKRVSSKNNICSVENFDKN-NVVNVKEKKKKN 385
R RD +L+ +K+ Y D+ + +S KNN+ + NV +KEKKK+N
Sbjct: 187761 RNRD--RLLEAMRKLVHYVDEQ-------RDISDKNNLFRKIPLPCDYNVGPLKEKKKRN 187913
Query: 386 SDTIERNEHNICNHNNNN 403
S TI +++ I N+ +
Sbjct: 187914 STTIRQDDTFIVEENDTS 187967
>Plasmodium_knowlesi_strain_H|PK4.chr01|2007-02-22|ds-
DNA|Plasmodium_knowlesi_Sanger
Length = 838594
Score = 28.9 bits (63), Expect = 8.5, Method: Composition-based stats.
Identities = 33/143 (23%), Positives = 66/143 (46%)
Frame = +3
Query: 371 DKNNVVNVKEKKKKNSDTIERNEHNICNHNNNNNNNNNNNNNHNNNNNNNNNHNNNNNNN 430
D NN + S +E N++ + ++++ N + N N N ++
Sbjct: 107673 DLNNSYEGNLENATASHNVEANDYVMEGKTSHSSTFTRKNEKMDQKKKNKQNEGKTNPHD 107852
Query: 431 NGDNKNNNIIDVNHILKDEMLKNEKILNYIQVSRVEKKIYINDYVDHEITVKLNTMVKEF 490
G+ K+NNI NE ++N+ +V+ + N + H VK +++V++
Sbjct: 107853 -GEEKHNNI------------TNELLINHDEVATSNTQ---NMNITHR--VKKDSVVEKR 107978
Query: 491 LKKISVSHEKLLLLKKKKRYFLG 513
+ +S+S + + LKK+K+Y LG
Sbjct: 107979 RETLSISSSRAIFLKKEKKYMLG 108047
Database: genoma.fa
Posted date: Mar 12, 2008 2:43 PM
Number of letters in database: 23,462,190
Number of sequences in database: 14
Lambda K H
0.311 0.130 0.359
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 14
Number of Hits to DB: 23,501,375
Number of extensions: 680937
Number of successful extensions: 74332
Number of sequences better than 10.0: 14
Number of HSP's gapped: 47895
Number of HSP's successfully gapped: 7239
Length of query: 608
Length of database: 7,820,730
Length adjustment: 104
Effective length of query: 504
Effective length of database: 7,819,274
Effective search space: 3940914096
Effective search space used: 3940914096
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)
TBLASTN 2.2.17 [Aug-26-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= ref_NP_473214.1_hypothetical protein_Pfalciparum
(608 letters)
Database: genoma.fa
14 sequences; 23,462,190 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Plasmodium_knowlesi_strain_H|PK4.chr02|2007-02-22|ds-DNA|Plasmod... 183 3e-46
Plasmodium_knowlesi_strain_H|PK4.chr09|2007-02-22|ds-DNA|Plasmod... 37 0.042
Plasmodium_knowlesi_strain_H|PK4.chr12.pseudo|2007-02-22|ds-DNA|... 33 0.57
Plasmodium_knowlesi_strain_H|PK4.chr05|2007-02-22|ds-DNA|Plasmod... 32 1.1
Plasmodium_knowlesi_strain_H|PK4.chr07|2007-02-22|ds-DNA|Plasmod... 31 2.0
Plasmodium_knowlesi_strain_H|chr10|2007-02-22|ds-DNA|Plasmodium_... 31 2.4
Plasmodium_knowlesi_strain_H|PK4.chr11.pseudo.embl|2007-02-22|ds... 30 3.9
Plasmodium_knowlesi_strain_H|PK4.chr06|2007-02-22|ds-DNA|Plasmod... 29 7.4
Plasmodium_knowlesi_strain_H|PK4.chr01|2007-02-22|ds-DNA|Plasmod... 29 8.5
>Plasmodium_knowlesi_strain_H|PK4.chr02|2007-02-22|ds-
DNA|Plasmodium_knowlesi_Sanger
Length = 1770351
Score = 183 bits (464), Expect = 3e-46, Method: Composition-based stats.
Identities = 106/161 (65%), Positives = 136/161 (84%), Gaps = 1/161 (0%)
Frame = +2
Query: 446 LKDEMLKNEKILNYIQVSRVEKKIYINDYVDHEITVKLNTMVKEFLKKISVSHEKLLLLK 505
+K+ +LKNEKI+NYI+ ++V+KK Y+N+YVD IT +LN MVK FL+KIS S EKL LL+
Sbjct: 1456073 IKERILKNEKIMNYIKTTKVQKKTYLNEYVDQVITEELNNMVKSFLEKISKSQEKLFLLR 1456252
Query: 506 KKKR-YFLGLKECYKHICIDEPKIVFIAPNIEPSLNNIFDDTLGKIIAKCKEKNIPIVFA 564
KKK+ Y+LGL+E Y+HICID PK+V +APNIEP N +FDD + KII KC+EK IP+V+A
Sbjct: 1456253 KKKKRYYLGLRESYRHICIDNPKLVLLAPNIEPMTNGVFDDQVNKIICKCREKGIPLVYA 1456432
Query: 565 LSKNLLGKCINKSRQSIICIIDNDSYIKECNDIINLANSLK 605
LSKNLLGKCI KSRQS+ICI+DNDSYI+EC +I+ LANSL+
Sbjct: 1456433 LSKNLLGKCIKKSRQSVICIVDNDSYIRECEEIVRLANSLR 1456555
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 59/124 (47%), Positives = 94/124 (75%), Gaps = 4/124 (3%)
Frame = +2
Query: 91 RKKEEKTYQTKNTNN----NIQFGNRLVRITFSSDKKKRKELIKKKKMNILMKQKKKKRK 146
+KK E + ++ N ++Q G+R+V+I F+SDKKKRKE K+K++N+L+ QK+KK+K
Sbjct: 1455266 QKKMETQIKRRDDNTTKQRHMQIGDRVVKIIFTSDKKKRKEQKKRKEINMLISQKRKKKK 1455445
Query: 147 EFEEKKKLINKLTNILNVEKEKGNYYFLPKCLKKKKISKLKKIIILEKKIKNDIYQELLK 206
EFE+KKK++ K+ N++ E+EKGN YFLPK + KK +K KK+I+LEK++K +Y +LL+
Sbjct: 1455446 EFEKKKKMVRKMNNMIRTEREKGNVYFLPKKFRPKKKTKRKKLILLEKEVKQSVYNDLLR 1455625
Query: 207 QKEN 210
+ +N
Sbjct: 1455626 ETQN 1455637
Score = 33.9 bits (76), Expect = 0.28, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 38/82 (46%)
Frame = +3
Query: 361 KNNICSVENFDKNNVVNVKEKKKKNSDTIERNEHNICNHNNNNNNNNNNNNNHNNNNNNN 420
K+N + +N +N N + + RN++ ++ N N N+N N N N+N
Sbjct: 108027 KSNTITNDNTRNDNTRNDSTRNDNTRNDNTRNDNTRNDNTRNENTRNDNTRNENTRNDNT 108206
Query: 421 NNHNNNNNNNNGDNKNNNIIDV 442
N N N+N D N+ +++
Sbjct: 108207 RNENTRNDNTRNDAFKNHPMNI 108272
Score = 32.7 bits (73), Expect = 0.58, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 35/85 (41%)
Frame = +3
Query: 353 LKDKRVSSKNNICSVENFDKNNVVNVKEKKKKNSDTIERNEHNICNHNNNNNNNNNNNNN 412
+ ++ + + +CS + N + +N T N N N+N N+N N N
Sbjct: 107979 VDNRSANCDSEMCSAMKSNTITNDNTRNDNTRNDSTRNDNTRNDNTRNDNTRNDNTRNEN 108158
Query: 413 HNNNNNNNNNHNNNNNNNNGDNKNN 437
N+N N N N+N N +N
Sbjct: 108159 TRNDNTRNENTRNDNTRNENTRNDN 108233
Score = 32.7 bits (73), Expect = 0.65, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 36/71 (50%)
Frame = +3
Query: 366 SVENFDKNNVVNVKEKKKKNSDTIERNEHNICNHNNNNNNNNNNNNNHNNNNNNNNNHNN 425
SV+N N + K N+ T + ++ +++ N+N N+N N+N N+N N
Sbjct: 107976 SVDNRSANCDSEMCSAMKSNTITNDNTRNDNTRNDSTRNDNTRNDNTRNDNTRNDNTRNE 108155
Query: 426 NNNNNNGDNKN 436
N N+N N+N
Sbjct: 108156 NTRNDNTRNEN 108188
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Frame = -1
Query: 369 NFDKNNVVNVKEKKKK-NSDTIERNEHNIC--NHNNNNNNNNNNNNNHNNNNNNNNNHNN 425
N +KN N++ + N ++ N+ NI NH N N N N +NN N+ N
Sbjct: 665526 NDNKNGRNNMENGRNSFNMHEMKMNDVNIMYGNHEKENATNMVNGNYVDNNTGNSENSYK 665347
Query: 426 NNNNNNGDNKNN 437
N NN+ G + NN
Sbjct: 665346 NENNSGGSHLNN 665311
Score = 29.3 bits (64), Expect = 7.2, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 34/85 (40%)
Frame = +3
Query: 353 LKDKRVSSKNNICSVENFDKNNVVNVKEKKKKNSDTIERNEHNICNHNNNNNNNNNNNNN 412
+K +++ N D N + +N +T N N N+N N N N+N
Sbjct: 108024 MKSNTITNDNTRNDNTRNDSTRNDNTRNDNTRNDNTRNDNTRNENTRNDNTRNENTRNDN 108203
Query: 413 HNNNNNNNNNHNNNNNNNNGDNKNN 437
N N N+N N+ N+ N N
Sbjct: 108204 TRNENTRNDNTRNDAFKNHPMNIAN 108278
Score = 28.9 bits (63), Expect = 8.0, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 51 NVENRKNVENRKCIKNIKSIKNIKNAKHIKNIKS 84
+V RKNV KC+K +S++ KN K +KS
Sbjct: 617669 SVRTRKNVRTTKCVKGERSVRTRKNVSARKGVKS 617770
Score = 28.9 bits (63), Expect = 8.7, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 52 VENRKNVENRKCIKNIKSIKNIKNAKHIKNIKSIKYYDDRK 92
V NRK V KC+K +S++ KN + K +K + RK
Sbjct: 617618 VRNRKYVRTTKCVKGERSVRTRKNVRTTKCVKGERSVRTRK 617740
>Plasmodium_knowlesi_strain_H|PK4.chr09|2007-02-22|ds-
DNA|Plasmodium_knowlesi_Sanger
Length = 2147124
Score = 36.6 bits (83), Expect = 0.042, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 34/56 (60%)
Frame = -1
Query: 383 KKNSDTIERNEHNICNHNNNNNNNNNNNNNHNNNNNNNNNHNNNNNNNNGDNKNNN 438
K N ++ +++ N N N+ N+N+ N+N ++N N+N ++N N+N G++ N
Sbjct: 153990 KDNGNSNDKSSDNSGNDNSGNDNSGNDNRGNDNRGNDNRGNDNRGNDNRGNDNRGN 153823
Score = 36.2 bits (82), Expect = 0.051, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 38/61 (62%)
Frame = -1
Query: 376 VNVKEKKKKNSDTIERNEHNICNHNNNNNNNNNNNNNHNNNNNNNNNHNNNNNNNNGDNK 435
+ +E++ ++D + N + N N+ +++N+ N+N+ N+N+ N+N N+N N+N N
Sbjct: 154044 IRSQEEEPTSNDALHPNGKDNGNSNDKSSDNSGNDNSGNDNSGNDNRGNDNRGNDNRGND 153865
Query: 436 N 436
N
Sbjct: 153864 N 153862
Score = 35.4 bits (80), Expect = 0.094, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 30/60 (50%)
Frame = -1
Query: 377 NVKEKKKKNSDTIERNEHNICNHNNNNNNNNNNNNNHNNNNNNNNNHNNNNNNNNGDNKN 436
N +K NS N N N N+N N+N ++N N+N ++N N+N+G K+
Sbjct: 153978 NSNDKSSDNSGNDNSGNDNSGNDNRGNDNRGNDNRGNDNRGNDNRGNDNRGNDNSGSEKD 153799
Score = 34.3 bits (77), Expect = 0.20, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 34/61 (55%)
Frame = -1
Query: 377 NVKEKKKKNSDTIERNEHNICNHNNNNNNNNNNNNNHNNNNNNNNNHNNNNNNNNGDNKN 436
N K+ N + + + ++ ++N+ N+N N+N N+N N+N N+N N+N N N
Sbjct: 153996 NGKDNGNSNDKSSDNSGNDNSGNDNSGNDNRGNDNRGNDNRGNDNRGNDNRGNDNRGNDN 153817
Query: 437 N 437
+
Sbjct: 153816 S 153814
Score = 33.1 bits (74), Expect = 0.44, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 33/57 (57%)
Frame = -1
Query: 382 KKKNSDTIERNEHNICNHNNNNNNNNNNNNNHNNNNNNNNNHNNNNNNNNGDNKNNN 438
K+ S E ++ + N +N N+N+ ++ N+ N+N+ N N+ N+N DN+ N+
Sbjct: 154050 KEIRSQEEEPTSNDALHPNGKDNGNSNDKSSDNSGNDNSGNDNSGNDNRGNDNRGND 153880
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = -1
Query: 245 TNNSNNNNNNDNNNNNDNNNNDNNNNNN 272
++NS N+N+ ++N+ NDN NDN N+N
Sbjct: 153960 SDNSGNDNSGNDNSGNDNRGNDNRGNDN 153877
Score = 29.6 bits (65), Expect = 5.8, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = -1
Query: 246 NNSNNNNNNDNNNNNDNNNNDNNNNNN 272
+NS N+N+ ++N NDN NDN N+N
Sbjct: 153942 DNSGNDNSGNDNRGNDNRGNDNRGNDN 153862
Score = 29.3 bits (64), Expect = 7.3, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -1
Query: 246 NNSNNNNNNDNNNNNDNNNNDNNNNNN 272
+NS N+N ++N NDN NDN N+N
Sbjct: 153927 DNSGNDNRGNDNRGNDNRGNDNRGNDN 153847
Score = 28.9 bits (63), Expect = 7.9, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 21/27 (77%)
Frame = -1
Query: 246 NNSNNNNNNDNNNNNDNNNNDNNNNNN 272
+N N+N+ + +N+ NDN+ NDN+ N+N
Sbjct: 153987 DNGNSNDKSSDNSGNDNSGNDNSGNDN 153907
>Plasmodium_knowlesi_strain_H|PK4.chr12.pseudo|2007-02-22|ds-
DNA|Plasmodium_knowlesi_Sanger
Length = 3128370
Score = 32.7 bits (73), Expect = 0.57, Method: Composition-based stats.
Identities = 28/115 (24%), Positives = 55/115 (47%), Gaps = 4/115 (3%)
Frame = -2
Query: 237 KKVKKIIITNNSNNNNNNDNNNNNDNNNNDNNNNNNNNIKFASNFLKKL----AKTENVL 292
K KK N++++N NNN+ +N ++ NN+ + LK L +E+
Sbjct: 836489 KVAKKGYPGENNHDSNGGKNNNDTSTSNLEDKAKEANNL--TDSILKDLDTVGTASEDEA 836316
Query: 293 NGELPDVQVKNLKKFIHTWANKYATGLRKGKKYGRKRDIRQLINVAKKIEKYSDQ 347
+ + V ++N+KK +H + G K+ K + L+N +K++KY++
Sbjct: 836315 SLDEASVHIRNIKKNMHLMMEQSRNGEEWSKEEAEKA-LSDLVNALRKVKKYTEH 836154
>Plasmodium_knowlesi_strain_H|PK4.chr05|2007-02-22|ds-
DNA|Plasmodium_knowlesi_Sanger
Length = 1324984
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Frame = +1
Query: 365 CSVENFDKNNVVNVKEKKKKNSDTIERNEHNICNHNNNNNNNNNNNNNHNNNNNNNNNHN 424
CS + N VN + ++ + + N + NN + +NN NN +NN
Sbjct: 266572 CSADGVSSANAVNAENRETRVGEVFSEQSSNDAPNRANNQDGSNNRGESNNRGESNNRGE 266751
Query: 425 NNN---NNNNGDNKN 436
+NN +NN G++ N
Sbjct: 266752 SNNRGESNNRGESNN 266796
>Plasmodium_knowlesi_strain_H|PK4.chr07|2007-02-22|ds-
DNA|Plasmodium_knowlesi_Sanger
Length = 1496036
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 27/45 (60%)
Frame = +2
Query: 377 NVKEKKKKNSDTIERNEHNICNHNNNNNNNNNNNNNHNNNNNNNN 421
N KE K N + E N+ N N NN+ ++NN + HN+ +N+NN
Sbjct: 187589 NEKENDKDNDNKEETNKRKSENRNINNHRDSNNGDRHNSEDNSNN 187723
Score = 29.6 bits (65), Expect = 5.2, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = -2
Query: 379 KEKKKKNSDTIERNEHNICNHNNNNNNNNNNNNNHNNNNNNNNNHNNNNNNNNGDNKNNN 438
KE K++ S + + NN N+ +HN+N +NN +N +K NN
Sbjct: 674983 KENKEEVSSYDVEEDPGCSDGGGNNEGNDAKQGDHNSNESNNEEGETETHNEKSKDKQNN 674804
>Plasmodium_knowlesi_strain_H|chr10|2007-02-22|ds-
DNA|Plasmodium_knowlesi_Sanger
Length = 1486039
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Frame = +2
Query: 342 EKYSDQNDNLHLKDKRVSSK---NNICSVENFDKNNVVNVKEKKKKNSDTIERNEHNICN 398
EK+ D N + L D +K + I S + D N + K NS T NE+NIC
Sbjct: 762176 EKHLDGNTTVFLDDGDACNKRTMHTIISRMDSDITNTEDALSKINDNSTTYMSNENNICL 762355
Query: 399 HNNNNNNNNNNNNNHN 414
NN + +++NN N N
Sbjct: 762356 VNNEGDISDDNNFNSN 762403
>Plasmodium_knowlesi_strain_H|PK4.chr11.pseudo.embl|2007-02-22|ds-
DNA|Plasmodium_knowlesi_Sanger
Length = 2372884
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 7/74 (9%)
Frame = +2
Query: 391 RNEHNICNHNN----NNNNNNNNNNNHNNNNNNNNNHNNNNNNNNGDNKNNNIIDVNHIL 446
+ E N+C N+ +NN N N ++ N N N++ N+ +NNNG NN+I +V++ +
Sbjct: 1270079 KGEKNVCRKNSGASMSNNINLNVSDTDLNGNKNSSEKRNSYDNNNGMISNNSINNVDNTV 1270258
Query: 447 ---KDEMLKNEKIL 457
K+ L NE ++
Sbjct: 1270259 AYFKENCLSNENVV 1270300
>Plasmodium_knowlesi_strain_H|PK4.chr06|2007-02-22|ds-
DNA|Plasmodium_knowlesi_Sanger
Length = 1053092
Score = 29.3 bits (64), Expect = 7.4, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = +3
Query: 327 RKRDIRQLINVAKKIEKYSDQNDNLHLKDKRVSSKNNICSVENFDKN-NVVNVKEKKKKN 385
R RD +L+ +K+ Y D+ + +S KNN+ + NV +KEKKK+N
Sbjct: 187761 RNRD--RLLEAMRKLVHYVDEQ-------RDISDKNNLFRKIPLPCDYNVGPLKEKKKRN 187913
Query: 386 SDTIERNEHNICNHNNNN 403
S TI +++ I N+ +
Sbjct: 187914 STTIRQDDTFIVEENDTS 187967
>Plasmodium_knowlesi_strain_H|PK4.chr01|2007-02-22|ds-
DNA|Plasmodium_knowlesi_Sanger
Length = 838594
Score = 28.9 bits (63), Expect = 8.5, Method: Composition-based stats.
Identities = 33/143 (23%), Positives = 66/143 (46%)
Frame = +3
Query: 371 DKNNVVNVKEKKKKNSDTIERNEHNICNHNNNNNNNNNNNNNHNNNNNNNNNHNNNNNNN 430
D NN + S +E N++ + ++++ N + N N N ++
Sbjct: 107673 DLNNSYEGNLENATASHNVEANDYVMEGKTSHSSTFTRKNEKMDQKKKNKQNEGKTNPHD 107852
Query: 431 NGDNKNNNIIDVNHILKDEMLKNEKILNYIQVSRVEKKIYINDYVDHEITVKLNTMVKEF 490
G+ K+NNI NE ++N+ +V+ + N + H VK +++V++
Sbjct: 107853 -GEEKHNNI------------TNELLINHDEVATSNTQ---NMNITHR--VKKDSVVEKR 107978
Query: 491 LKKISVSHEKLLLLKKKKRYFLG 513
+ +S+S + + LKK+K+Y LG
Sbjct: 107979 RETLSISSSRAIFLKKEKKYMLG 108047
Database: genoma.fa
Posted date: Mar 12, 2008 2:43 PM
Number of letters in database: 23,462,190
Number of sequences in database: 14
Lambda K H
0.311 0.130 0.359
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 14
Number of Hits to DB: 23,501,375
Number of extensions: 680937
Number of successful extensions: 74332
Number of sequences better than 10.0: 14
Number of HSP's gapped: 47895
Number of HSP's successfully gapped: 7239
Length of query: 608
Length of database: 7,820,730
Length adjustment: 104
Effective length of query: 504
Effective length of database: 7,819,274
Effective search space: 3940914096
Effective search space used: 3940914096
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)
