BLASTP 2.0MP-WashU [04-May-2006] [linux26-x64-I32LPF64 2006-05-10T17:22:28]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= kinasedomain_dsp
(286 letters)
Database: PknowlesiORF
176,078 sequences; 18,685,909 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
Plasmodium_k||PK4.chr11.pseudo.embl-6-727400-727167|compu... 66 0.19 1
Plasmodium_k||chr14-2-2311154-2311378|computed|PlasmoDB|l... 60 0.61 1
Plasmodium_k||PK4.chr01-1-418828-419055|computed|PlasmoDB... 59 0.70 1
Plasmodium_k||PK4.chr12.pseudo-3-705576-705749|computed|P... 57 0.87 1
Plasmodium_k||PK4.chr11.pseudo.embl-1-659110-659334|compu... 57 0.87 1
Plasmodium_k||PK4.chr12.pseudo-2-1955309-1955473|computed... 56 0.92 1
Plasmodium_k||PK4.chr11.pseudo.embl-3-1973727-1973930|com... 56 0.92 1
Plasmodium_k||chr14-2-972998-973240|computed|PlasmoDB|len... 58 0.96 1
Plasmodium_k||chr14-2-866348-866572|computed|PlasmoDB|len... 55 0.96 1
Plasmodium_k||PK4.chr09-3-1711122-1711283|computed|Plasmo... 53 0.996 1
Plasmodium_k||PK4.chr11.pseudo.embl-1-699487-699702|compu... 53 0.996 1
Plasmodium_k||PK4.chr07-5-1376137-1375922|computed|Plasmo... 53 0.996 1
Plasmodium_k||chr14-6-48250-48092|computed|PlasmoDB|lengt... 52 0.9991 1
Plasmodium_k||chr02-3-529260-529475|computed|PlasmoDB|len... 52 0.9991 1
Plasmodium_k||PK4.chr02-3-99048-99224|computed|PlasmoDB|l... 52 0.9991 1
Plasmodium_k||PK4.chr02-3-851247-851432|computed|PlasmoDB... 52 0.9991 1
Plasmodium_k||PK4.chr09-4-283287-283129|computed|PlasmoDB... 51 0.9999 1
Plasmodium_k||PK4.chr09-5-1476494-1476309|computed|Plasmo... 51 0.9999 1
Plasmodium_k||PK4.chr13-5-812356-812171|computed|PlasmoDB... 51 0.9999 1
Plasmodium_k||PK4.chr07-3-889488-889643|computed|PlasmoDB... 51 0.9999 1
>Plasmodium_k||PK4.chr11.pseudo.embl-6-727400-727167|computed|PlasmoDB|length=7
8
Length = 78
Score = 66 (28.3 bits), Expect = 0.21, P = 0.19
Identities = 17/72 (23%), Positives = 34/72 (47%)
Query: 27 VRHIVHLCYDDFLDATPSADLAYKEQRGRIFKVIEKLISAIQEDTDWPPQVRRISSSGDY 86
V+ V +C+ F+ S+D + G + KV+ L+ ++ D D P + SS+
Sbjct: 5 VKFRVSICWLPFMYRQNSSD--FMSSVGILNKVVSLLMVCLRMDLDTPSSRKLTSSTSTR 62
Query: 87 NSGRHLILCDDN 98
+ ++ CD +
Sbjct: 63 EENKFMLTCDSS 74
>Plasmodium_k||chr14-2-2311154-2311378|computed|PlasmoDB|length=75
Length = 75
Score = 60 (26.2 bits), Expect = 0.94, P = 0.61
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 74 PPQVRRISSSGDYNSGRHLILCDDNFYYRSMRYKLYQLCRDSG 116
P RISS ++ H+ +C NF+ S L+ LC SG
Sbjct: 26 PTGTCRISSVIHTHTHTHVCVCAGNFFVFSKSILLFPLCGQSG 68
>Plasmodium_k||PK4.chr01-1-418828-419055|computed|PlasmoDB|length=76
Length = 76
Score = 59 (25.8 bits), Expect = 1.2, P = 0.70
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 11 KSSLCSWLLGQQAALRVRHI-VHLC--YDDFLDATPSADLAYKEQRGRIFKVI 60
K++L SW + A +R H+ H+C YD + + + E R R K +
Sbjct: 18 KAALISWRFSRNALVRCLHLRTHICFKYDSAIVFSALKKRRFLEYRKRALKAL 70
>Plasmodium_k||PK4.chr12.pseudo-3-705576-705749|computed|PlasmoDB|length=58
Length = 58
Score = 57 (25.1 bits), Expect = 2.0, P = 0.87
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 75 PQVRRISSSGDYNSGRHL 92
PQVR++S+ G NSGR L
Sbjct: 36 PQVRKVSTKGKTNSGRTL 53
>Plasmodium_k||PK4.chr11.pseudo.embl-1-659110-659334|computed|PlasmoDB|length=7
5
Length = 75
Score = 57 (25.1 bits), Expect = 2.0, P = 0.87
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 87 NSGRHLILCDDNFYYRSMRYKLYQLCRDSGCIFGQIYM 124
N G H+ C + ++LYQL S FGQIY+
Sbjct: 34 NVGTHMA-CSYSSILAIPTWQLYQLLTKSAYFFGQIYV 70
>Plasmodium_k||PK4.chr12.pseudo-2-1955309-1955473|computed|PlasmoDB|length=55
Length = 55
Score = 56 (24.8 bits), Expect = 2.6, P = 0.92
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 71 TDWPPQVRRISSSGDYNS 88
TD+PPQ+ ++SS G NS
Sbjct: 19 TDYPPQMTQLSSKGKRNS 36
>Plasmodium_k||PK4.chr11.pseudo.embl-3-1973727-1973930|computed|PlasmoDB|length
=68
Length = 68
Score = 56 (24.8 bits), Expect = 2.6, P = 0.92
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 84 GDYNSGRHLILCD--DNFYYRSMRYKLYQLCRD 114
GDYN+ H+ +C +N +Y + + CRD
Sbjct: 23 GDYNTSAHVYICISVNNVFYLFHFFFFFFACRD 55
>Plasmodium_k||chr14-2-972998-973240|computed|PlasmoDB|length=81
Length = 81
Score = 58 (25.5 bits), Expect = 3.1, P = 0.96
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 7 PAAGKSSLCSWLLGQ--QAALRVRHIVHLCYDDFL 39
P+ S LCSWLL Q++LR H + L Y FL
Sbjct: 14 PSIAVSCLCSWLLLSLSQSSLRQHHQLRLRYQ-FL 47
>Plasmodium_k||chr14-2-866348-866572|computed|PlasmoDB|length=75
Length = 75
Score = 55 (24.4 bits), Expect = 3.3, P = 0.96
Identities = 15/36 (41%), Positives = 16/36 (44%)
Query: 99 FYYRSMRYKLYQLCRDSGCIFG--QIYMASSLDSCL 132
F+Y S RY CR C G IY DSCL
Sbjct: 13 FFYTSFRY----FCRSRKCHTGGGYIYTCHCTDSCL 44
>Plasmodium_k||PK4.chr09-3-1711122-1711283|computed|PlasmoDB|length=54
Length = 54
Score = 53 (23.7 bits), Expect = 5.5, P = 0.996
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 89 GRHLILCDDNFYYRSMRYKLYQLCRDSGCIFGQIYMASSLDSC 131
G +L +CDDN + + C+ IFG ++ + L +C
Sbjct: 6 GTNLSICDDNMHAKGNDTCG---CKSGSLIFGTLHKQTHLHNC 45
>Plasmodium_k||PK4.chr11.pseudo.embl-1-699487-699702|computed|PlasmoDB|length=7
2
Length = 72
Score = 53 (23.7 bits), Expect = 5.5, P = 0.996
Identities = 8/10 (80%), Positives = 10/10 (100%)
Query: 72 DWPPQVRRIS 81
DWPP++RRIS
Sbjct: 58 DWPPKIRRIS 67
>Plasmodium_k||PK4.chr07-5-1376137-1375922|computed|PlasmoDB|length=72
Length = 72
Score = 53 (23.7 bits), Expect = 5.5, P = 0.996
Identities = 13/24 (54%), Positives = 14/24 (58%)
Query: 184 LLAFIASLLDLPAMETTLDLPPAV 207
LL F+ SL DLP L LPP V
Sbjct: 25 LLKFVNSLFDLPYNPVLLLLPPFV 48
>Plasmodium_k||chr14-6-48250-48092|computed|PlasmoDB|length=53
Length = 53
Score = 52 (23.4 bits), Expect = 7.0, P = 0.9991
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 111 LCRDSG-CIFGQIYMASSLDSCL 132
LC+ S CI+ +IY+ +SL CL
Sbjct: 3 LCKHSNVCIYTRIYVPTSLFFCL 25
>Plasmodium_k||chr02-3-529260-529475|computed|PlasmoDB|length=72
Length = 72
Score = 52 (23.4 bits), Expect = 7.0, P = 0.9991
Identities = 12/46 (26%), Positives = 23/46 (50%)
Query: 89 GRHLILCDDNFYYRSMRYKLY-QLCRDS--GCIFGQIYMASSLDSC 131
G +LC + + R+++Y LC S IF Q++ ++ +C
Sbjct: 8 GYSYLLCAETRFPPPARWRVYGNLCVHSFLALIFAQLFFVETISNC 53
>Plasmodium_k||PK4.chr02-3-99048-99224|computed|PlasmoDB|length=59
Length = 59
Score = 52 (23.4 bits), Expect = 7.0, P = 0.9991
Identities = 18/39 (46%), Positives = 23/39 (58%)
Query: 39 LDATPSADLAYKEQRGRIFKVIEKL--ISAIQEDTDWPP 75
L ATP L Y EQRGR FK ++KL +S I + + P
Sbjct: 14 LSATP---LMY-EQRGRYFK-LQKLYNVSRIYDTPHFKP 47
>Plasmodium_k||PK4.chr02-3-851247-851432|computed|PlasmoDB|length=62
Length = 62
Score = 52 (23.4 bits), Expect = 7.0, P = 0.9991
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 90 RHLILCDDNFYYRSMRYKLYQLCRDSG 116
R L +C YY+ R+ L LCR SG
Sbjct: 34 RRLRICPWGLYYKKGRFHL--LCRHSG 58
>Plasmodium_k||PK4.chr09-4-283287-283129|computed|PlasmoDB|length=53
Length = 53
Score = 51 (23.0 bits), Expect = 9.0, P = 0.9999
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 74 PPQVRRISSS--GDYNSG--RHLILCDDNFYYRSMRYKLYQLCRDSGC 117
PP VRRI+ + ++S +I C F R +K++++C S C
Sbjct: 4 PPYVRRIAQNLRRPHSSAFSPFVITCVAIFRMRRTFFKVFKICDPSVC 51
>Plasmodium_k||PK4.chr09-5-1476494-1476309|computed|PlasmoDB|length=62
Length = 62
Score = 51 (23.0 bits), Expect = 9.0, P = 0.9999
Identities = 17/61 (27%), Positives = 24/61 (39%)
Query: 53 RGRIFKVIEKLISAIQEDTDWPPQVRRISSSGDYNSGRHLILCDDNFYYRSMRYKLYQLC 112
RGR F I S DW SS ++ H+ +C +N+Y + Y L
Sbjct: 1 RGRKFTAISIANSLGGYSKDWVGFTSSPLSSSPFS---HICVCINNYYLKVSAIYYYTLA 57
Query: 113 R 113
R
Sbjct: 58 R 58
>Plasmodium_k||PK4.chr13-5-812356-812171|computed|PlasmoDB|length=62
Length = 62
Score = 51 (23.0 bits), Expect = 9.0, P = 0.9999
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 226 RTRIGALLDGLRQGEDKRLAGQTLNSRRKDILTKFRTEIGGKQID 270
+TR ALL L + R+ G+T R+K K RT + Q+D
Sbjct: 15 QTRFSALLHLLHRKTPLRVHGRTAQLRKKGPHRKCRTPLSA-QMD 58
>Plasmodium_k||PK4.chr07-3-889488-889643|computed|PlasmoDB|length=52
Length = 52
Score = 51 (23.0 bits), Expect = 9.0, P = 0.9999
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 264 IGGKQIDGDVEGDALDYYVNL 284
+ G D D EGDA D+Y L
Sbjct: 32 VSGSANDSDPEGDASDWYAYL 52
Parameters:
-o /var/www/PlasmoDB/plasmo5.4.1/tmp/blast/WuBlastPlugin_7664.out
B=50
V=50
E=10
filter=seg
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.137 0.404 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 286 286 8.2 70 3 11 22 0.49 33
33 0.42 37
Statistics:
Database: /var/www//PlasmoDB/plasmo5.4.1/data/blast/PknowlesiORF
Title: PknowlesiORF
Posted: 11:30:20 PM EST Jan 24, 2008
Created: 11:46:57 AM EDT Sep 25, 2007
Format: XDF-1
# of letters in database: 18,685,909
# of sequences in database: 176,078
# of database sequences satisfying E: 20
No. of states in DFA: 612 (130 KB)
Total size of DFA: 372 KB (2151 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 4
Search cpu time: 1.58u 0.07s 1.65t Elapsed: 00:00:01
Total cpu time: 1.58u 0.13s 1.71t Elapsed: 00:00:01
Start: Wed Mar 12 10:55:53 2008 End: Wed Mar 12 10:55:54 2008
