BLASTP 2.2.17 [Aug-26-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= kinasedomain_dsp
(286 letters)
Database: orfs.fa
176,078 sequences; 18,685,909 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Plasmodium_k||chr02-6-405575-404370|computed|PlasmoDB|length=402 31 0.28
Plasmodium_k||PK4.chr09-6-1618072-1616432|computed|PlasmoDB|leng... 31 0.30
Plasmodium_k||PK4.chr12.pseudo-3-705576-705749|computed|PlasmoDB... 29 1.2
Plasmodium_k||chr04-5-309467-308547|computed|PlasmoDB|length=307 28 1.6
Plasmodium_k||PK4.chr11.pseudo.embl-6-727400-727167|computed|Pla... 28 1.6
Plasmodium_k||chr14-2-2311154-2311378|computed|PlasmoDB|length=75 28 1.8
Plasmodium_k||PK4.chr12.pseudo-2-1955309-1955473|computed|Plasmo... 28 2.6
Plasmodium_k||PK4.chr12.pseudo-5-2012630-2010117|computed|Plasmo... 27 3.5
Plasmodium_k||PK4.chr09-1-81460-83400|computed|PlasmoDB|length=647 27 4.3
Plasmodium_k||chr14-5-2152544-2152215|computed|PlasmoDB|length=110 27 4.6
Plasmodium_k||PK4.chr13-5-641074-639572|computed|PlasmoDB|length... 27 5.0
Plasmodium_k||PK4.chr13-2-125039-126745|computed|PlasmoDB|length... 27 6.0
Plasmodium_k||PK4.chr11.pseudo.embl-2-1519907-1520176|computed|P... 26 7.8
>Plasmodium_k||chr02-6-405575-404370|computed|PlasmoDB|length=402
Length = 402
Score = 30.8 bits (68), Expect = 0.28, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 76 QVRRISSSGDYNSGRH-LILCDDNFYYRSMRYKLYQLCRDSGCIF 119
Q +R SS H LIL +D F+ SMR K Y LCR C++
Sbjct: 359 QNQRCSSRQCRRKTEHVLILLNDTFHLPSMRKKYYLLCRK--CMY 401
>Plasmodium_k||PK4.chr09-6-1618072-
1616432|computed|PlasmoDB|length=547
Length = 547
Score = 30.8 bits (68), Expect = 0.30, Method: Composition-based stats.
Identities = 18/82 (21%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 123 YMASSLDSCLQANSLRSDATRVPVDVVRQMNERLEVPDTSEAWERNSLTLNGLDMDTTGS 182
+ ++S C+ NS++ AT + + +R+E PD E W + + L+ + ++
Sbjct: 52 FSSASQIECVDENSIKKLATVLRKKKNKNERDRMEHPDNPEKWVMSEVDLDEILVNIKNL 111
Query: 183 ALLA-FIASLLDLPAMETTLDL 203
++ + +S+++ ME +DL
Sbjct: 112 SVCSNLYSSMVESEIMEDIIDL 133
>Plasmodium_k||PK4.chr12.pseudo-3-705576-
705749|computed|PlasmoDB|length=58
Length = 58
Score = 28.9 bits (63), Expect = 1.2, Method: Composition-based stats.
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 75 PQVRRISSSGDYNSGRHL 92
PQVR++S+ G NSGR L
Sbjct: 36 PQVRKVSTKGKTNSGRTL 53
>Plasmodium_k||chr04-5-309467-308547|computed|PlasmoDB|length=307
Length = 307
Score = 28.5 bits (62), Expect = 1.6, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 23/69 (33%)
Query: 30 IVHLCYDDFLDATPSADLAYKEQRGRIFKVIEKLISAIQEDTDWPPQVRRISSSGDYNSG 89
I+HL DDF +KE+ G + ++ +KL A+ + SG +SG
Sbjct: 66 ILHLIQDDF----------WKEETGEVVQLWQKLSEAMAQ-------------SGGQDSG 102
Query: 90 RHLILCDDN 98
H DDN
Sbjct: 103 DHCNTVDDN 111
>Plasmodium_k||PK4.chr11.pseudo.embl-6-727400-
727167|computed|PlasmoDB|length=78
Length = 78
Score = 28.5 bits (62), Expect = 1.6, Method: Composition-based stats.
Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 27 VRHIVHLCYDDFLDATPSADLAYKEQRGRIFKVIEKLISAIQEDTDWPPQVRRISSSGDY 86
V+ V +C+ F+ S+D + G + KV+ L+ ++ D D P + SS+
Sbjct: 5 VKFRVSICWLPFMYRQNSSD--FMSSVGILNKVVSLLMVCLRMDLDTPSSRKLTSSTSTR 62
Query: 87 NSGRHLILCDDNFYY 101
+ ++ CD + +
Sbjct: 63 EENKFMLTCDSSVSF 77
>Plasmodium_k||chr14-2-2311154-2311378|computed|PlasmoDB|length=75
Length = 75
Score = 28.1 bits (61), Expect = 1.8, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 12/63 (19%)
Query: 66 AIQEDTDWP----PQVR--------RISSSGDYNSGRHLILCDDNFYYRSMRYKLYQLCR 113
AIQ + P P++R RISS ++ H+ +C NF+ S L+ LC
Sbjct: 6 AIQAEFSSPSFVIPRIRLKSPTGTCRISSVIHTHTHTHVCVCAGNFFVFSKSILLFPLCG 65
Query: 114 DSG 116
SG
Sbjct: 66 QSG 68
>Plasmodium_k||PK4.chr12.pseudo-2-1955309-
1955473|computed|PlasmoDB|length=55
Length = 55
Score = 27.7 bits (60), Expect = 2.6, Method: Composition-based stats.
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 71 TDWPPQVRRISSSGDYNS 88
TD+PPQ+ ++SS G NS
Sbjct: 19 TDYPPQMTQLSSKGKRNS 36
>Plasmodium_k||PK4.chr12.pseudo-5-2012630-
2010117|computed|PlasmoDB|length=838
Length = 838
Score = 27.3 bits (59), Expect = 3.5, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 49 YKEQRGRIFKVIEKLISAIQE----DTDWPPQVRRISSSGDYNSGRHLILCDDN 98
YK RGR KV+ K I+E D D +++R++ G++ +L +DN
Sbjct: 740 YKSYRGRTAKVLRKKKKLIEELDRLDPDRRQEMKRLTLQGEFAQLDNLRNFNDN 793
>Plasmodium_k||PK4.chr09-1-81460-83400|computed|PlasmoDB|length=647
Length = 647
Score = 26.9 bits (58), Expect = 4.3, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 249 LNSRRKDILTKFRTEIGGKQIDGDVEGDALDYYV 282
+N KD+L K++ E+ G ++G DYY+
Sbjct: 175 INESMKDVLEKYKNELTSLHFWGILKGVKKDYYI 208
>Plasmodium_k||chr14-5-2152544-2152215|computed|PlasmoDB|length=110
Length = 110
Score = 26.9 bits (58), Expect = 4.6, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 196 AMETTLDLPPAVARGLRQDQSLVHRLDLLLRTRIGALLDGLRQGEDK 242
AMET+L LPP A SL+ L+ + R+ ++ +R+ DK
Sbjct: 21 AMETSLTLPPIYAHIYMYFSSLLKELNDIFRS--NDIVGDMRKNSDK 65
>Plasmodium_k||PK4.chr13-5-641074-
639572|computed|PlasmoDB|length=501
Length = 501
Score = 26.6 bits (57), Expect = 5.0, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 1 VALIGLPAAGKSSLCSWLLGQ 21
+ALIG P AGKSSL + +L +
Sbjct: 109 IALIGAPNAGKSSLLNSILNK 129
>Plasmodium_k||PK4.chr13-2-125039-
126745|computed|PlasmoDB|length=569
Length = 569
Score = 26.6 bits (57), Expect = 6.0, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 2 ALIGLPAAGKSSLCSWLLGQQAALRVRHIVHLCYDDFLD 40
A+ G GKSSLC+ + + H HL Y F D
Sbjct: 79 AITGRRNTGKSSLCAHICVNLFFNDILHYFHLFYSSFFD 117
>Plasmodium_k||PK4.chr11.pseudo.embl-2-1519907-
1520176|computed|PlasmoDB|length=90
Length = 90
Score = 26.2 bits (56), Expect = 7.8, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 22/55 (40%)
Query: 188 IASLLDLPAMETTLDLPPAVARGLRQDQSLVHRLDLLLRTRIGALLDGLRQGEDK 242
I L+ LPA + LPP ++ Q VH R LL + G+ +
Sbjct: 1 IGELISLPARKQQGKLPPDAIHVSKRTQIYVHTFSTAQRLAKSCLLTSISNGQKQ 55
Database: orfs.fa
Posted date: Mar 12, 2008 4:11 PM
Number of letters in database: 18,685,909
Number of sequences in database: 176,078
Lambda K H
0.321 0.137 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 176078
Number of Hits to DB: 8,994,727
Number of extensions: 301817
Number of successful extensions: 643
Number of sequences better than 10.0: 16
Number of HSP's gapped: 643
Number of HSP's successfully gapped: 16
Length of query: 286
Length of database: 18,685,909
Length adjustment: 90
Effective length of query: 196
Effective length of database: 2,838,889
Effective search space: 556422244
Effective search space used: 556422244
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
# BLASTP 2.2.17 [Aug-26-2007]
# Query: kinasedomain_dsp
# Database: orfs.fa
# Fields: Query id, Subject id, % identity, alignment length, mismatches, gap openings, q. start, q. end, s. start, s. end, e-value, bit score
kinasedomain_dsp Plasmodium_k||chr02-6-405575-404370|computed|PlasmoDB|length=402 42.22 45 23 2 76 119 359 401 0.28 30.8
kinasedomain_dsp Plasmodium_k||PK4.chr09-6-1618072-1616432|computed|PlasmoDB|length=547 21.95 82 63 1 123 203 52 133 0.30 30.8
kinasedomain_dsp Plasmodium_k||PK4.chr12.pseudo-3-705576-705749|computed|PlasmoDB|length=58 61.11 18 7 0 75 92 36 53 1.2 28.9
kinasedomain_dsp Plasmodium_k||chr04-5-309467-308547|computed|PlasmoDB|length=307 28.99 69 26 2 30 98 66 111 1.6 28.5
kinasedomain_dsp Plasmodium_k||PK4.chr11.pseudo.embl-6-727400-727167|computed|PlasmoDB|length=78 22.67 75 56 1 27 101 5 77 1.6 28.5
kinasedomain_dsp Plasmodium_k||chr14-2-2311154-2311378|computed|PlasmoDB|length=75 31.75 63 31 2 66 116 6 68 1.8 28.1
kinasedomain_dsp Plasmodium_k||PK4.chr12.pseudo-2-1955309-1955473|computed|PlasmoDB|length=55 55.56 18 8 0 71 88 19 36 2.6 27.7
kinasedomain_dsp Plasmodium_k||PK4.chr12.pseudo-5-2012630-2010117|computed|PlasmoDB|length=838 31.48 54 33 1 49 98 740 793 3.5 27.3
kinasedomain_dsp Plasmodium_k||PK4.chr09-1-81460-83400|computed|PlasmoDB|length=647 32.35 34 23 0 249 282 175 208 4.3 26.9
kinasedomain_dsp Plasmodium_k||chr14-5-2152544-2152215|computed|PlasmoDB|length=110 34.04 47 29 1 196 242 21 65 4.6 26.9
kinasedomain_dsp Plasmodium_k||PK4.chr13-5-641074-639572|computed|PlasmoDB|length=501 57.14 21 9 0 1 21 109 129 5.0 26.6
kinasedomain_dsp Plasmodium_k||PK4.chr13-2-125039-126745|computed|PlasmoDB|length=569 35.90 39 25 0 2 40 79 117 6.0 26.6
kinasedomain_dsp Plasmodium_k||PK4.chr11.pseudo.embl-2-1519907-1520176|computed|PlasmoDB|length=90 27.27 55 40 0 188 242 1 55 7.8 26.2
