GPx7
TBLASTN 2.2.17 [Aug-26-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= Gpx7_prot
(193 letters)
Database: cds.fa
5106 sequences; 11,140,562 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Plasmodium_knowlesi_strain_H|PK4.chr13|PKH_131090|Annotation|Pla... 337 7e-94
Plasmodium_knowlesi_strain_H|PK4.chr12.pseudo|PKH_125860|Annotat... 332 4e-92
Plasmodium_knowlesi_strain_H|chr04|PKH_041200|Annotation|Plasmod... 28 0.99
Plasmodium_knowlesi_strain_H|PK4.chr11.pseudo.embl|PKH_112660|An... 28 1.5
Plasmodium_knowlesi_strain_H|PK4.chr09|PKH_093690|Annotation|Pla... 27 3.1
Plasmodium_knowlesi_strain_H|PK4.chr13|PKH_130060|Annotation|Pla... 25 8.9
Plasmodium_knowlesi_strain_H|PK4.chr09|PKH_090350|Annotation|Pla... 25 9.6
>Plasmodium_knowlesi_strain_H|PK4.chr13|PKH_131090|Annotation|Plasmo
dium_knowlesi_Sanger|(protein coding) glutathione
peroxidase, putative
Length = 603
Score = 337 bits (865), Expect = 7e-94, Method: Composition-based stats.
Identities = 176/184 (95%), Positives = 177/184 (96%), Gaps = 7/184 (3%)
Frame = +1
Query: 17 QRNPANMFSFFKKITVSKGELRPSIYDYHVKKLDGTTVPMSTYKNKVLLIVNSASKCGLT 76
QRNPANMFSFFKKITVSKGELRPSIYDYHVKKLDGTTVPMSTYKNKVLLIVNSASKCGLT
Sbjct: 49 QRNPANMFSFFKKITVSKGELRPSIYDYHVKKLDGTTVPMSTYKNKVLLIVNSASKCGLT 228
Query: 77 RKHVDQLNQLHDRLNEQGLEILAFPTSQFLNQEFPNTCDISSFNDKNKIKYNFFAPIEVN 136
RKHVDQLNQLHDRLNEQGLEILAFPTSQFLNQEFPNTCDISSFNDKNKIKYNFFAPIEVN
Sbjct: 229 RKHVDQLNQLHDRLNEQGLEILAFPTSQFLNQEFPNTCDISSFNDKNKIKYNFFAPIEVN 408
Query: 137 GENTHELFKFLKANCDS-------VENIGWNFGKFLVNRSGNVVSYFSPRTYPLEIEKNI 189
GENTHELFKFLKANCDS +ENIGWNFGKFLVNRSGNVVSYFSPRTYPLEIEKNI
Sbjct: 409 GENTHELFKFLKANCDSMHDKNGQLENIGWNFGKFLVNRSGNVVSYFSPRTYPLEIEKNI 588
Query: 190 TDLL 193
TDLL
Sbjct: 589 TDLL 600
>Plasmodium_knowlesi_strain_H|PK4.chr12.pseudo|PKH_125860|Annotation
|Plasmodium_knowlesi_Sanger|(protein coding) glutathione
peroxidase, putative
Length = 681
Score = 332 bits (850), Expect = 4e-92, Method: Composition-based stats.
Identities = 174/184 (94%), Positives = 175/184 (95%), Gaps = 7/184 (3%)
Frame = +1
Query: 17 QRNPANMFSFFKKITVSKGELRPSIYDYHVKKLDGTTVPMSTYKNKVLLIVNSASKCGLT 76
QRN ANMFSFFKKITVSK ELRPSIYDYHVKKLDGTTVPMSTYKNKVLLIVNSASKCGLT
Sbjct: 49 QRNHANMFSFFKKITVSKEELRPSIYDYHVKKLDGTTVPMSTYKNKVLLIVNSASKCGLT 228
Query: 77 RKHVDQLNQLHDRLNEQGLEILAFPTSQFLNQEFPNTCDISSFNDKNKIKYNFFAPIEVN 136
RKHVDQLNQLHDRLNEQGLEILAFPTSQFLNQEFPNTCDISSFNDKNKIKYNFFAPIEVN
Sbjct: 229 RKHVDQLNQLHDRLNEQGLEILAFPTSQFLNQEFPNTCDISSFNDKNKIKYNFFAPIEVN 408
Query: 137 GENTHELFKFLKANCDS-------VENIGWNFGKFLVNRSGNVVSYFSPRTYPLEIEKNI 189
GENTHELFKFLKANCDS +ENIGWNFGKFLVNRSGNVVSYFSPRTYPLEIEKNI
Sbjct: 409 GENTHELFKFLKANCDSMHDKNGQLENIGWNFGKFLVNRSGNVVSYFSPRTYPLEIEKNI 588
Query: 190 TDLL 193
TDLL
Sbjct: 589 TDLL 600
>Plasmodium_knowlesi_strain_H|chr04|PKH_041200|Annotation|Plasmodium
_knowlesi_Sanger|(protein coding) cysteine protease,
putative
Length = 2853
Score = 28.5 bits (62), Expect = 0.99, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 23/55 (41%)
Frame = +1
Query: 99 AFPTSQFLNQEFPNTCDISSFNDKNKIKYNFFAPIEVNGENTHELFKFLKANCDS 153
+FPTS + N N I N + +++ IEV+G H N D+
Sbjct: 97 SFPTSAYSNHTDENKLSIDQENGRGDASPEYYSGIEVDGTIAHTPLNVPPPNADN 261
>Plasmodium_knowlesi_strain_H|PK4.chr11.pseudo.embl|PKH_112660|Annotat
ion|Plasmodium_knowlesi_Sanger|(protein coding)
hypothetical protein, conserved in Plasmodium species
Length = 8178
Score = 27.7 bits (60), Expect = 1.5, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Frame = +1
Query: 13 LLILQRNPANMFSFFKKITVSKGELRPSIYDYHVKKLDGTTVPMSTYK-----NKVLLIV 67
LL +RN N + + + E YD HV K++ MS YK NK+ +I+
Sbjct: 4213 LLSKKRNKNNWYMTDDECKALEEERSKEFYD-HVHKINNFL--MSNYKDDSFVNKLKVII 4383
Query: 68 NSASKCGLTRKHVDQLNQ-LHDRLNEQ 93
NSA K + ++ LNQ L D+L +
Sbjct: 4384 NSADKQFKKEEVLNILNQCLRDKLTSE 4464
>Plasmodium_knowlesi_strain_H|PK4.chr09|PKH_093690|Annotation|Plasmodi
um_knowlesi_Sanger|(protein coding) Malaria antigen,
putative
Length = 8139
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 9/34 (26%), Positives = 21/34 (61%)
Frame = +1
Query: 96 EILAFPTSQFLNQEFPNTCDISSFNDKNKIKYNF 129
E+ FP+ + ++ + N C + ++ D+ K +Y+F
Sbjct: 3409 ELKKFPSIEEISHDLENLCFVVNYKDEEKKRYSF 3510
>Plasmodium_knowlesi_strain_H|PK4.chr13|PKH_130060|Annotation|Plasmo
dium_knowlesi_Sanger|(protein coding) hypothetical
protein, conserved in Apicomplexan species
Length = 618
Score = 25.4 bits (54), Expect = 8.9, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 5 LFLALLFVLLILQRNPANMFSFFKKI 30
LF A F+LLIL +P + SFF +
Sbjct: 110 LFFACFFILLILPCSPRSSLSFFSPL 33
>Plasmodium_knowlesi_strain_H|PK4.chr09|PKH_090350|Annotation|Plasmo
dium_knowlesi_Sanger|(protein coding) 5'-3'
exoribonuclease, putative
Length = 1947
Score = 25.4 bits (54), Expect = 9.6, Method: Composition-based stats.
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +1
Query: 130 FAPIEVNGENTHELFKFLKANC 151
F+ +V GE H++ KF++ NC
Sbjct: 646 FSGSDVPGEGEHKILKFIRENC 711
Database: cds.fa
Posted date: Mar 6, 2008 4:53 PM
Number of letters in database: 11,140,562
Number of sequences in database: 5106
Lambda K H
0.323 0.139 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 5106
Number of Hits to DB: 2,862,728
Number of extensions: 47246
Number of successful extensions: 315
Number of sequences better than 10.0: 21
Number of HSP's gapped: 313
Number of HSP's successfully gapped: 22
Length of query: 193
Length of database: 3,713,520
Length adjustment: 87
Effective length of query: 106
Effective length of database: 3,269,298
Effective search space: 346545588
Effective search space used: 346545588
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 37 (18.9 bits)
GPx8
TBLASTN 2.2.17 [Aug-26-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= GPx8_prot
(218 letters)
Database: cds.fasta
5106 sequences; 11,140,562 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Plasmodium_knowlesi_strain_H|PK4.chr12.pseudo|PKH_125860|Annotat... 349 2e-97
Plasmodium_knowlesi_strain_H|PK4.chr13|PKH_131090|Annotation|Pla... 318 7e-88
Plasmodium_knowlesi_strain_H|chr04|PKH_041200|Annotation|Plasmod... 28 2.1
>Plasmodium_knowlesi_strain_H|PK4.chr12.pseudo|PKH_125860|Annotation
|Plasmodium_knowlesi_Sanger|(protein coding) glutathione
peroxidase, putative
Length = 681
Score = 349 bits (896), Expect = 2e-97, Method: Composition-based stats.
Identities = 192/201 (95%), Positives = 193/201 (96%), Gaps = 8/201 (3%)
Frame = +1
Query: 17 QRNHANMFSFFKKITVSKEELRPSIYDYHVKKLDGTTVPMSTYKNKVLLIVNSASK-GLT 75
QRNHANMFSFFKKITVSKEELRPSIYDYHVKKLDGTTVPMSTYKNKVLLIVNSASK GLT
Sbjct: 49 QRNHANMFSFFKKITVSKEELRPSIYDYHVKKLDGTTVPMSTYKNKVLLIVNSASKCGLT 228
Query: 76 RKHVDQLNQLHDRLNEQGLEILAFPTSQFLNQEFPNTCDISSFNDKNKIKYNFFAPIEVN 135
RKHVDQLNQLHDRLNEQGLEILAFPTSQFLNQEFPNTCDISSFNDKNKIKYNFFAPIEVN
Sbjct: 229 RKHVDQLNQLHDRLNEQGLEILAFPTSQFLNQEFPNTCDISSFNDKNKIKYNFFAPIEVN 408
Query: 136 GENTHELFKFLKANCDS-------VENIGWNFGKFLVNRSGNVVSYFSPRTYPLEIEKNI 188
GENTHELFKFLKANCDS +ENIGWNFGKFLVNRSGNVVSYFSPRTYPLEIEKNI
Sbjct: 409 GENTHELFKFLKANCDSMHDKNGQLENIGWNFGKFLVNRSGNVVSYFSPRTYPLEIEKNI 588
Query: 189 TDLLEKKTKTELSVNQDGQIE 209
TDLLEKKTKTELSVNQDGQIE
Sbjct: 589 TDLLEKKTKTELSVNQDGQIE 651
>Plasmodium_knowlesi_strain_H|PK4.chr13|PKH_131090|Annotation|Plasmo
dium_knowlesi_Sanger|(protein coding) glutathione
peroxidase, putative
Length = 603
Score = 318 bits (814), Expect = 7e-88, Method: Composition-based stats.
Identities = 173/184 (94%), Positives = 174/184 (94%), Gaps = 8/184 (4%)
Frame = +1
Query: 17 QRNHANMFSFFKKITVSKEELRPSIYDYHVKKLDGTTVPMSTYKNKVLLIVNSASK-GLT 75
QRN ANMFSFFKKITVSK ELRPSIYDYHVKKLDGTTVPMSTYKNKVLLIVNSASK GLT
Sbjct: 49 QRNPANMFSFFKKITVSKGELRPSIYDYHVKKLDGTTVPMSTYKNKVLLIVNSASKCGLT 228
Query: 76 RKHVDQLNQLHDRLNEQGLEILAFPTSQFLNQEFPNTCDISSFNDKNKIKYNFFAPIEVN 135
RKHVDQLNQLHDRLNEQGLEILAFPTSQFLNQEFPNTCDISSFNDKNKIKYNFFAPIEVN
Sbjct: 229 RKHVDQLNQLHDRLNEQGLEILAFPTSQFLNQEFPNTCDISSFNDKNKIKYNFFAPIEVN 408
Query: 136 GENTHELFKFLKANCDS-------VENIGWNFGKFLVNRSGNVVSYFSPRTYPLEIEKNI 188
GENTHELFKFLKANCDS +ENIGWNFGKFLVNRSGNVVSYFSPRTYPLEIEKNI
Sbjct: 409 GENTHELFKFLKANCDSMHDKNGQLENIGWNFGKFLVNRSGNVVSYFSPRTYPLEIEKNI 588
Query: 189 TDLL 192
TDLL
Sbjct: 589 TDLL 600
>Plasmodium_knowlesi_strain_H|chr04|PKH_041200|Annotation|Plasmodium
_knowlesi_Sanger|(protein coding) cysteine protease,
putative
Length = 2853
Score = 27.7 bits (60), Expect = 2.1, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 23/55 (41%)
Frame = +1
Query: 98 AFPTSQFLNQEFPNTCDISSFNDKNKIKYNFFAPIEVNGENTHELFKFLKANCDS 152
+FPTS + N N I N + +++ IEV+G H N D+
Sbjct: 97 SFPTSAYSNHTDENKLSIDQENGRGDASPEYYSGIEVDGTIAHTPLNVPPPNADN 261
Database: cds.fasta
Posted date: Mar 6, 2008 6:01 PM
Number of letters in database: 11,140,562
Number of sequences in database: 5106
Lambda K H
0.316 0.133 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 5106
Number of Hits to DB: 2,588,000
Number of extensions: 40384
Number of successful extensions: 246
Number of sequences better than 10.0: 13
Number of HSP's gapped: 242
Number of HSP's successfully gapped: 13
Length of query: 218
Length of database: 3,713,520
Length adjustment: 88
Effective length of query: 130
Effective length of database: 3,264,192
Effective search space: 424344960
Effective search space used: 424344960
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 38 (19.2 bits)
