GPx7
# TBLASTN 2.2.17 [Aug-26-2007]
# Query: SPP00000010_1.0 # Protein # Glutathione peroxidase 7 (GPx7) # Homo sapiens # Complete
# Database: genoma_PlasmoDB.fa
# Fields: Query id, Subject id, % identity, alignment length, mismatches, gap openings, q. start, q. end, s. start, s. end, e-value, bit score
SPP00000010_1.0 Plasmodium_knowlesi_strain_H|PK4.chr13|2007-02-22|ds-DNA|Plasmodium_knowlesi_Sanger 33.33 72 48 0 26 97 511563 511348 1e-04 42.4
SPP00000010_1.0 Plasmodium_knowlesi_strain_H|PK4.chr12.pseudo|2007-02-22|ds-DNA|Plasmodium_knowlesi_Sanger 33.33 72 48 0 26 97 2538817 2539032 1e-04 42.4
TBLASTN 2.2.17 [Aug-26-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SPP00000010_1.0 # Protein # Glutathione peroxidase 7 (GPx7) #
Homo sapiens # Complete
(187 letters)
Database: genoma_PlasmoDB.fa
14 sequences; 23,462,190 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Plasmodium_knowlesi_strain_H|PK4.chr13|2007-02-22|ds-DNA|Plasmod... 42 1e-04
Plasmodium_knowlesi_strain_H|PK4.chr12.pseudo|2007-02-22|ds-DNA|... 42 1e-04
>Plasmodium_knowlesi_strain_H|PK4.chr13|2007-02-22|ds-DNA|Plasmodium_knowlesi_Sanger
Length = 2200295
Score = 42.4 bits (98), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 33/72 (45%)
Frame = -3
Query: 26 YDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFP 85
YD+ + G V + Y+ V L+VN AS+CG T +H L QL L V +
Sbjct: 511563 YDYHVKKLDGTTVPMSTYKNKVLLIVNSASKCGLTRKHVDQLNQLHDRLNEQGLEVRHWT 511384
Query: 86 CNQFGQQEPDSN 97
+ GQ SN
Sbjct: 511383 KYRRGQLHVPSN 511348
>Plasmodium_knowlesi_strain_H|PK4.chr12.pseudo|2007-02-22|ds-DNA|Plasmodium_knowlesi_Sanger
Length = 3128370
Score = 42.4 bits (98), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 33/72 (45%)
Frame = +1
Query: 26 YDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFP 85
YD+ + G V + Y+ V L+VN AS+CG T +H L QL L V +
Sbjct: 2538817 YDYHVKKLDGTTVPMSTYKNKVLLIVNSASKCGLTRKHVDQLNQLHDRLNEQGLEVRHWT 2538996
Query: 86 CNQFGQQEPDSN 97
+ GQ SN
Sbjct: 2538997 KYRRGQLHVPSN 2539032
Database: genoma_PlasmoDB.fa
Posted date: Feb 22, 2008 12:03 PM
Number of letters in database: 23,462,190
Number of sequences in database: 14
Lambda K H
0.320 0.135 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 14
Number of Hits to DB: 4,484,125
Number of extensions: 61432
Number of successful extensions: 260
Number of sequences better than 1.0e-02: 2
Number of HSP's gapped: 260
Number of HSP's successfully gapped: 2
Length of query: 187
Length of database: 7,820,730
Length adjustment: 92
Effective length of query: 95
Effective length of database: 7,819,442
Effective search space: 742846990
Effective search space used: 742846990
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
GPx8
# TBLASTN 2.2.17 [Aug-26-2007]
# Query: SPP00000011_1.0 # Protein # Glutathione peroxidase 8 (GPx8) # Homo sapiens # Complete
# Database: genoma.fa
# Fields: Query id, Subject id, % identity, alignment length, mismatches, gap openings, q. start, q. end, s. start, s. end, e-value, bit score
SPP00000011_1.0 Plasmodium_knowlesi_strain_H|PK4.chr12.pseudo|2007-02-22|ds-DNA|Plasmodium_knowlesi_Sanger 44.44 54 30 1 40 93 2538802 2538954 1e-04 43.1
SPP00000011_1.0 Plasmodium_knowlesi_strain_H|PK4.chr12.pseudo|2007-02-22|ds-DNA|Plasmodium_knowlesi_Sanger 48.15 27 13 1 164 189 2539690 2539770 0.53 30.8
SPP00000011_1.0 Plasmodium_knowlesi_strain_H|PK4.chr12.pseudo|2007-02-22|ds-DNA|Plasmodium_knowlesi_Sanger 59.09 22 9 0 162 183 1727245 1727310 2.0 28.9
SPP00000011_1.0 Plasmodium_knowlesi_strain_H|PK4.chr13|2007-02-22|ds-DNA|Plasmodium_knowlesi_Sanger 44.44 54 30 1 40 93 511578 511426 1e-04 43.1
SPP00000011_1.0 Plasmodium_knowlesi_strain_H|PK4.chr13|2007-02-22|ds-DNA|Plasmodium_knowlesi_Sanger 48.15 27 13 1 164 189 510682 510602 0.43 31.2
SPP00000011_1.0 Plasmodium_knowlesi_strain_H|PK4.chr13|2007-02-22|ds-DNA|Plasmodium_knowlesi_Sanger 26.39 72 53 2 138 209 469922 469743 8.6 26.9
SPP00000011_1.0 Plasmodium_knowlesi_strain_H|PK4.chr01|2007-02-22|ds-DNA|Plasmodium_knowlesi_Sanger 38.71 31 19 0 79 109 238006 238098 3.9 28.1
SPP00000011_1.0 Plasmodium_knowlesi_strain_H|PK4.chr11.pseudo.embl|2007-02-22|ds-DNA|Plasmodium_knowlesi_Sanger 44.00 25 14 0 102 126 1105440 1105366 5.9 27.3
TBLASTN 2.2.17 [Aug-26-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SPP00000011_1.0 # Protein # Glutathione peroxidase 8 (GPx8) #
Homo sapiens # Complete
(209 letters)
Database: genoma.fa
14 sequences; 23,462,190 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Plasmodium_knowlesi_strain_H|PK4.chr12.pseudo|2007-02-22|ds-DNA|... 43 1e-04
Plasmodium_knowlesi_strain_H|PK4.chr13|2007-02-22|ds-DNA|Plasmod... 43 1e-04
Plasmodium_knowlesi_strain_H|PK4.chr01|2007-02-22|ds-DNA|Plasmod... 28 3.9
Plasmodium_knowlesi_strain_H|PK4.chr11.pseudo.embl|2007-02-22|ds... 27 5.9
>Plasmodium_knowlesi_strain_H|PK4.chr12.pseudo|2007-02-22|ds-
DNA|Plasmodium_knowlesi_Sanger
Length = 3128370
Score = 43.1 bits (100), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/54 (44%), Positives = 31/54 (57%)
Frame = +1
Query: 40 LKPKINSFYAFEVKDAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELH 93
L+P I Y + VK G TV + YK KV L+VN AS C LT ++ L +LH
Sbjct: 2538802 LRPSI---YDYHVKKLDGTTVPMSTYKNKVLLIVNSASKCGLTRKHVDQLNQLH 2538954
Score = 30.8 bits (68), Expect = 0.53, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +1
Query: 164 WNFWKYLVNPEGQVVKFWKPEE-PIEV 189
WNF K+LVN G VV ++ P P+E+
Sbjct: 2539690 WNFGKFLVNRSGNVVSYFSPRTYPLEI 2539770
Score = 28.9 bits (63), Expect = 2.0, Method: Composition-based stats.
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +1
Query: 162 PRWNFWKYLVNPEGQVVKFWKP 183
PRWN K+LV E + VKF KP
Sbjct: 1727245 PRWNISKWLVKEEYKSVKFSKP 1727310
>Plasmodium_knowlesi_strain_H|PK4.chr13|2007-02-22|ds-
DNA|Plasmodium_knowlesi_Sanger
Length = 2200295
Score = 43.1 bits (100), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/54 (44%), Positives = 31/54 (57%)
Frame = -3
Query: 40 LKPKINSFYAFEVKDAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELH 93
L+P I Y + VK G TV + YK KV L+VN AS C LT ++ L +LH
Sbjct: 511578 LRPSI---YDYHVKKLDGTTVPMSTYKNKVLLIVNSASKCGLTRKHVDQLNQLH 511426
Score = 31.2 bits (69), Expect = 0.43, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = -2
Query: 164 WNFWKYLVNPEGQVVKFWKPEE-PIEV 189
WNF K+LVN G VV ++ P P+E+
Sbjct: 510682 WNFGKFLVNRSGNVVSYFSPRTYPLEI 510602
Score = 26.9 bits (58), Expect = 8.6, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 36/72 (50%)
Frame = -1
Query: 138 HKIKILGSEGEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWKPEEPIEVIRPDIAAL 197
H I +L E A +F K R L+N EG++ +E ++++ PD+ +
Sbjct: 469922 HVISLLTYEHMEASKFYTFKFKSVIR------LINVEGEI------KEEVKIVVPDMDVI 469779
Query: 198 VRQVIIKKKEDL 209
+R++ +K ED+
Sbjct: 469778 LRKLKNEKLEDI 469743
>Plasmodium_knowlesi_strain_H|PK4.chr01|2007-02-22|ds-
DNA|Plasmodium_knowlesi_Sanger
Length = 838594
Score = 28.1 bits (61), Expect = 3.9, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 79 CQLTDRNYLGLKELHKEFGPSHFSVLAFPCN 109
C R+++ L LH SH+S L PCN
Sbjct: 238006 CNFRRRHHVPLHLLHIYLDSSHYSPLPVPCN 238098
>Plasmodium_knowlesi_strain_H|PK4.chr11.pseudo.embl|2007-02-22|ds-
DNA|Plasmodium_knowlesi_Sanger
Length = 2372884
Score = 27.3 bits (59), Expect = 5.9, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -2
Query: 102 SVLAFPCNQFGESEPRPSKEVESFA 126
+ L+F CN F + P PSK VE+ +
Sbjct: 1105440 TTLSFRCNYFSKCSPSPSKGVENVS 1105366
Database: genoma.fa
Posted date: Feb 29, 2008 11:22 AM
Number of letters in database: 23,462,190
Number of sequences in database: 14
Lambda K H
0.321 0.139 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 14
Number of Hits to DB: 6,669,270
Number of extensions: 106514
Number of successful extensions: 485
Number of sequences better than 10.0: 5
Number of HSP's gapped: 485
Number of HSP's successfully gapped: 9
Length of query: 209
Length of database: 7,820,730
Length adjustment: 93
Effective length of query: 116
Effective length of database: 7,819,428
Effective search space: 907053648
Effective search space used: 907053648
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)
