genewise $Name: wise2-2-0 $ (unreleased release)
This program is freely distributed under a GPL. See source directory
Copyright (c) GRL limited: portions of the code are from separate copyright

Query protein:       Tb927.4.3410
Comp Matrix:         blosum62.bla
Gap open:            12
Gap extension:       2
Start/End            local
Target Sequence      subseq(408000,5000)
Strand:              forward
Start/End (protein)  local
Gene Paras:          human.gf
Codon Table:         codon.table
Subs error:          1e-05
Indel error:         1e-05
Model splice?        model
Model codon bias?    flat
Model intron bias?   tied
Null model           syn
Algorithm            623

genewise output
Score 409.38 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

Tb927.4.3410      13 FKPVLLEVAGALVDNRCADVTRRLRQYRNRYAPILRLVTTLIAPVMEES 
                     F PVL+EVAG++ D    DVT+RLR+YRNRY P+LR + TL+A  + E+ 
                     FYPVLIEVAGSMDDAIVRDVTQRLRRYRNRYQPLLRCMFTLVATTVPEA 
subseq(408000,5  897 ttcgcaggggaagggagcggaccccctcactccccctatatggaagcgg 
                     tactttatcggtaacttgatcagtggagagaacttggttcttccctcac 
                     ccggccgtcgcgccatgctgggcgtccacctgggggcgcaacccctagg 


Tb927.4.3410      62 QLFGDDDSCVESA----AVADDGRL----KEGVT---------EMAGAT 
                     +LFGDD +    A      A  G+L    K  VT          +     
                     RLFGDDSAAALEAQPHPTTAAAGQLFTAPKNAVTVNKTYPLVSRFYPRQ 
subseq(408000,5 1044 cctgggagggtggccccaaggggcctagcaaggagaaatccgtcttccc 
                     gttgaagccctacacaccccccgattcccaactctaacacttcgtacga 
                     ggtccctctcagtgccaccatgcggctgcgcggcccgccgcggcctatg 


Tb927.4.3410      94 AVVGGDGALRGRNGGVK--------RGRGEPL-ITAPRCAVVAEKRIIV 
                      V     +      GV+         G  +P  +  P  AV++   +   
                     PVCAQQKSCSDNTAGVEPAMLPGASTGALQPCWVDDPATAVLS--GVTT 
subseq(408000,5 1191 cgtgccaatagaaggggcgaccggtaggcccttgggcgaggct  ggaa 
                     ctgcaaagggaaccgtaccttcgcccgctacggtaaccccttc  gtcc 
                     cacgaggtctcctttggacggctgcctccgacggtcaggggct  tccc 


Tb927.4.3410     134 VHRLHDKEVPDAVEKLERFMSYHFLPLALLHNCQP--NISPDDVPFVLR 
                         HD+    AV +LE FM+YHFLP A+ HNC P   IS     FVLR 
                     AAGYHDR----AVRRLEDFMAYHFLPFAMTHNCSPVEAISASAKAFVLR 
subseq(408000,5 1332 gggtcgc    ggcacggtagtctcctgaacattcgggatgtgagtgtc 
                     ccgaaag    ctggtaattcaattctctcaagcctactccccactttg 
                     tcctttt    ctggggccggttcggccggccccagggctaacggcgaa 


Tb927.4.3410     181 HYVHEATRTASFLVADL----------SKRAAAIIDPQVD-VSCYEEDL 
                     HYV+EA+RT+SFL+AD               AAIIDP+ +    Y  DL 
                     HYVNEASRTSSFLLADPFYTSASVPADAVAGAAIIDPRAEQLEAYAADL 
subseq(408000,5 1467 ctgaggacatttccggcttatgagcggggggggaagccggccggtgggc 
                     aataacggccctttcactacccgtccactcgccttacgcaatacaccat 
                     ccgcgaccgcgcgtgtcccctgtcgacgtaagccccggaggagttcgcg 


Tb927.4.3410     219 AFLQVQLVGIVLTHCFVDIAMGHAALLEHHPTAKLLSGTPFVSTGYGCS 
                     +   V L  I+ THC+VD A G A L++  P A+++SG P+   G     
                     SRFGVTLSCIIFTHCYVDGASGLAELIDSFPAARVVSGIPLEPAG---- 
subseq(408000,5 1614 actggacataatacttggggtgcggcagatcggcggtgaccgcgg     
                     ggtgtctggtttcagatagccgtcattagtcccgttcgtctaccg     
                     ttttcccctctcgccccccccggcgcccccgtcccccactcgccc     


Tb927.4.3410     268 DGLSLHLSSRLHLRCISVPSFSPECLVVELHLDAQLLALFTGTVMGTDA 
                         + LS RL LR + VP+FSPECL+ E++    L  L TG +  TDA 
                     TTEDVQLSPRLRLRTVRVPAFSPECLLAEIYFCGVLKGLCTGVLWSTDA 
subseq(408000,5 1749 aagggccaccccccagcgcgttcgttcggatttggcagctaggctaagg 
                     ccaatatgcgtgtgctgtcctccagttcatatggttagtgcgttggcac 
                     cagcgggctcaacacgggcccaagtgcagtcttagcgtgcgctggcctt 


Tb927.4.3410     317 VPRYEF--FGDFP-----LPLEPQGDLQHTSAMPAPEVAR--RFLRERV 
                      PR ++     FP      P  P   +   S      +A    +L++ + 
                     APRCDLLQWSAFPRETGHVPTPPSFSINGGSGDRDAALAHTHEMLKKYL 
subseq(408000,5 1896 gcctgcccttgtccgagcgcacctttaaggaggcgggcgcacgacaatt 
                     ccggattagcctcgacgatccccctctaggggagacctcacaattaaat 
                     ctctcggggtttccggacatggtcccccccttcccgcggctcggcggcg 


Tb927.4.3410     357 WDAYFFPDPAAGHVQ                          WDHVVVFP 
                     +DAYF P  A+                                 VV++P 
                     FDAYFSPLCASVRGP          P:T[act]        LVQVVLLP 
subseq(408000,5 2043 tggtttcctgagcgcAGTTGGCC  Intron 1   AAGCTtgcggccc 
                     tacatcctgcgtggc <1-----[2089 : 2184]-1>  ttattttc 
                     ctcctagccattcgg                          gggtggcc 


Tb927.4.3410     381 SHGGYSNVTHQLDLYWAVHIGDMKRMKHSRTVMDKILDPE----KYAQH 
                     +HGGY+NVT QLDLYWA H+GD+ RMKHSR+V+D +         Y +  
                     THGGYNNVTSQLDLYWAAHLGDLTRMKHSRSVIDALETTAEAFARYNRR 
subseq(408000,5 2211 acggtaagaaccgcttggccggcacaactctgaggcgaagggtgataac 
                     caggaaatcgatatagccatgatcgtaacgcttactacccactcgaagg 
                     accgcccggtggcccgggtcccgttggcccctccgcggaaggccgccac 


Tb927.4.3410     426 MLDRPRLPK--PLLVSHVREWNLLSVP-------SAFGGSGEGLLRRRL 
                     +L  P  P      V H+R+   L  P         +    +  LR    
                     LLPLPHPPSFDTSRVVHLRQLLALLRPEQRATCLAQLSADMQHALRYSF 
subseq(408000,5 2358 tcccccccttgaacggccccccgccccgccgattgcctggaccgccttt 
                     ttctcaccctacggttatgattcttgcaagccgtcatccataactgact 
                     aagggcggcctcctgattcaatgaagtgggaacgggttccggcaggccc 


Tb927.4.3410     466 LPPPA-CALTSPCPGP-----------VVVDIRSAADHVTMHLKGSVNV 
                      P  A  A   P                +VD+R A D+  +HL G+VNV 
                     DPSAAHSAFGDPSNASRRQFASFSSYVNLVDVRDANDYHALHLCGAVNV 
subseq(408000,5 2505 gctggcagtggctagtccctgtttttgacgggcggagtcgccctgggag 
                     accccagctgaccaccggatcctccatattatgacaaaactatggctat 
                     ctacgctacccggtgtcggtttttgcgccccgctccctcagccctccca 


Tb927.4.3410     503 PMTFPAAAYGVKKAELWLQCMLKPLQPVVVVCANERQCHLARQRLELIS 
                     PM+FP+ AYG ++AELWLQC++ P QP+V +CA E Q     +RL  +S 
                     PMSFPSVAYGARRAELWLQCVIVPFQPIVALCATEEQRVEVSRRLSALS 
subseq(408000,5 2652 caatcaggtggcaggttcctgagctccaggctgaggccgggtccctgct 
                     ctgtcgtcagcggcatgtagtttctacttctgccaaagtatcggtcctc 
                     agccgtgcttcgaggggtacactgtgttgcctacgagacgggaccaggc 


Tb927.4.3410     552 PGASVETFTLQELCPPC---GVHAVDGQEKEVFNRV--DVTTSLPATVD 
                     P + V  FTL +L         H+  G +          V+  +P +V  
                     PESRVHVFTLADLSDALEFPAEHSTRGGQAATTELPWREVSCDVPTSVS 
subseq(408000,5 2799 cgacgcgtacggttggtgtcggctacggcggaagcctcggttggcaagt 
                     caggtattctcatcactatccaaccgggaccccatcggatcgatccgtc 
                     agtcgtccggccgacggacgggcggacggatagggggcgggccgtatgt 


Tb927.4.3410     596 -SRHLPRHLTWVFDSTASAQSRLDCYQKLQFIEPAEDTLVLDCRTPYEF 
                         LPR+L W+    A A   L  Y+ L+  EP +  +VLD RTPYEF 
                     VDVPLPRNLLWIQRDDALA--NLTSYEDLKAAEPTDTRVVLDVRTPYEF 
subseq(408000,5 2946 gggccccacctaccgggcg  atattggcagggcagacggcggcactgt 
                     tatctcgattgtagaactc  atccaaataccaccacgtttatgccaat 
                     ccgcttccgtgcacccgct  cgagcaccgatacctgccgctgcggcgt 


Tb927.4.3410     644 RNGSHTRSVFLSLGDLCHITALDLVAQQLTPEADVHCGGWPSPELGRII 
                     +NGSH  SV + L  LC +   D V    +  +  HC    S  L     
                     KNGSHQHSVHVGLAQLCAMMVEDAVEASRS-LSQWHCS--CSRRLADAY 
subseq(408000,5 3087 aagtcccagcggcgcctgaagggggggtct ctctcta  ttcacgggt 
                     aagcaaagtatgtcatgctttaactaccgc tcagagg  gcggtcaca 
                     accacgctgcgggtggccggcacccgaggg ggggcct  caagggcct 


Tb927.4.3410     693 LDRMYEAALASGLKCRPGCRGIRKIVVYCATGYRSLIAASLMRRAFEAA 
                     +  ++ AAL + L        +  +V+YCA GYRSLIA SL++RA+EA+ 
                     VKSIHTAALMARLPVVRQEASLSDVVIYCAGGYRSLIALSLLQRAIEAS 
subseq(408000,5 3225 gaaacaggcagcccggccggtctgggattgggtctcagttccccgaggt 
                     tagtacccttcgtcttgaacctcatttagcggagcttctcttagctacc 
                     ggcacaggcggcctcgggagtccccccctttgtcaatgggtggcccatt 


Tb927.4.3410     742 SLD----IVVYDVAGGALQVMQQRPDLWTVKDRSIICIS           
                     +      + + +V+GGA Q+M QRPDLW VKDRS++CIS           
                     ATPAWRTLHISNVSGGAFQIMTQRPDLWQVKDRSVVCIS           
subseq(408000,5 3372 gacgtcatcatagtgggtcaaacccgctcgagctggtaa           
                     ccccggctatcatcggctattcagcatgataagcttgtg           
                     cctggcggtccccgtcctacggaggcgggcgccctgttc           


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