Genewise $Name: wise2-2-0 $ (unreleased release)
This program is freely distributed under a GPL. See source directory
Copyright (c) GRL limited: portions of the code are from separate copyright
Query protein: SPP00000035_1.0
Comp Matrix: blosum62.bla
Gap open: 12
Gap extension: 2
Start/End global
Target Sequence subseq(6000,6000)
Strand: forward
Start/End (protein) global
Gene Paras: human.gf
Codon Table: codon.table
Subs error: 1e-05
Indel error: 1e-05
Model splice? model
Model codon bias? flat
Model intron bias? tied
Null model syn
Algorithm 623
genewise output
Score 497.91 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
SPP00000035_1.0 1 MAAMAVALRGLGGRFRWRTQAVAGGVRGAARGAAAGQRDYDLLVVGGGS
M V + L F + + V + YDL+V+GGGS
MKFTLVTILFL--IFMKKAKIVMADLTFM----------YDLVVIGGGS
subseq(6000,600 2361 aatacgaattt ataaagaagaggcata tgtggagggt
tatcttctttt tttaacatttcatctt aattttgggc
gatgacaagta atgaggaacgttaatg ttatattttt
SPP00000035_1.0 50 GGLACAKEAAQLGRKVAVVDYVEPSPQGTRWGLGGTCVNVGCIPKKLMH
GG+A AKEAA+ G+KVA+ D+V+PS QGT+WGLGGTCVNVGC+PKKLMH
GGMAAAKEAAKYGKKVALFDFVKPSTQGTKWGLGGTCVNVGCVPKKLMH
subseq(6000,600 2472 ggagggagggatgaaggctgtgactacgaatgcggatgaggtgcaacac
ggtcccaaccaagaatcttattacccagcaggtggcgtatggtcaatta
tagataagatgttaggaatttagtttataggaaaaacgtgataaggtgc
SPP00000035_1.0 99 QAALLGGLI-QDAPNYGWEVAQPVPHDWRKMAEAVQNHVKSLNWGHRVQ
+AL+ I DA +G + + W K+ E ++NH++ LN+ +R
YSALISSSIHHDAQMFGHKTSSSF--EWGKLVETLRNHIRMLNFSYRTG
subseq(6000,600 2619 ttgtataaaccggcatgcaaatat gtgatggatcacaaacatatcag
accttcggtaaacattgaacgcgt aggattactgaatgttatgagcg
caaaattctctttagtacatttct agaaaaataattaagtctcctaa
SPP00000035_1.0 147 LQDRKVKYFNIKASFVDEHTVCGVAKGGKEILLSADHIIIATGGRPRYP
L+ V+Y+N A ++D H+V G K+ + S I++ATGGRP P
LRVGNVEYINALAKLIDPHSVEYEDNGQKKTITSR-YILLATGGRPSIP
subseq(6000,600 2760 ccggaggtaagcgatagcctggtggagcaaaaata tattgaggccaac
tgtgataatactcattacactaaaaagaaactccg atttccgggcgtc
atgtttatctagagatcccttatgctcgaaactta ccaaaaataccca
SPP00000035_1.0 196 THIEGALEYGITSDDIFWLKESPGKTLVVGASYVALECAGFLTGIGLDT
+ GA++Y ITSDDIF+L +SPGKTLV+GASY+ LE AGFL +G DT
ETVPGAIQYSITSDDIFFLSKSPGKTLVIGASYIGLETAGFLNELGFDT
subseq(6000,600 2904 gagcggacttaatggattctaacgaacgaggttagtgaggtcagtgtga
actcgctaactccaattttcagcgactttgccatgtaccgttaatgtac
actgatcatgtctttcctctattggtactattctaagatgcatgatcta
SPP00000035_1.0 245 TIMMRSIPLRGFDQQMSSMVIEHMASHGTRFLRGCAPSRVRRLPDGQLQ
T+ MRSIPLRGFD+Q S ++E+M + GT+FL G P + ++ + ++
TVAMRSIPLRGFDRQCSEKIVEYMKATGTKFLVGVVPINIEKVNE-NIK
subseq(6000,600 3051 aggaatactagtgacttgaaggtaagagaatcggggcaaagagag aaa
ctctgctctggtagagcaattaataccgcatttgttctataataa ata
atagaatagagccaattggttatggagatgcttttaatctagatg ttg
SPP00000035_1.0 294 VTWEDSTTGKEDTGTFDTVLWAIGRVPDTRSLNLEKAGVDTSPDTQKIL
V++ D + + F+TVL+A GR PD + LNL GV+ S D+ KI+
VSFSDGSVEE-----FETVLYATGRNPDVKGLNLNAVGVEVS-DSGKII
subseq(6000,600 3195 gttaggtggg tgagttgagcacggagcacaggggggt gtgaaa
tctgagctaa tacttaccggacatagtatactgtatc acgatt
gtccttttag tattataattcatagattgttcatatg tttgtt
SPP00000035_1.0 343 VDSREATSVPHIYAIGDVVEGRPELTPIAIMAGRLLVQRLFGGSSDLMD
++ATSVP I+A+GD+VEGRPELTP+A+ AG LL +RLF GS++ +D
AP-KDATSVPSIFAVGDIVEGRPELTPVAVKAGILLARRLFAGSNEFID
subseq(6000,600 3324 gc aggatgcaatggggagggacgcacgggaggactgaactggtagtag
cc aaccctcgttctgattaggcatcctctacgtttcggttcgcaatta
cc atttttatataaattagaacaatttatgtattaaagtttgtcattt
SPP00000035_1.0 392 YDNVPTTVFTPLEYGCVGLSEEEAVARHGQEHVEVYHAHYKPLEFTVAG
YD VPTTVFTP+EYG VGLS E A+A++G++ +E Y + + LE+ A
YDFVPTTVFTPIEYGHVGLSSEAAIAKYGEDDIEEYLSEFSTLEIAAAH
subseq(6000,600 3468 tgtgcaagtacagtgcggcttgggagatggggaggtctgtaacgagggc
aattcccttcctaagatgtccacctcaagaaataaatcatgctatccca
tttcttcatattatgttgtacatattatggtttagttcattgtattttt
SPP00000035_1.0 441 RDASQ--------------CYVKMVCLREPPQLVLGLHFLGPNAGEVTQ
R+ + C K+V ++ + V+G HF+GPNAGE+TQ
REKPEHLRENEMDFALPLNCLAKLVVVKSQGEKVVGFHFVGPNAGEITQ
subseq(6000,600 3615 agacgcccgagagtgcctattgacgggaacggagggtctggcagggaac
gaacaatgaaatatctctagtcattttagagaattgtattgcacgatca
aaatgttcatggctattactgggttatgcataattactttttttaatta
SPP00000035_1.0 476 GFALGIKCGASYAQVMRTVGIHPTCSEEVVKLRISKRSGLDPTVTG-CU
GF+L +K GA+ +GIHPT +E L ++KRSG +G C
GFSLAVKLGATKKDFDDMIGIHPTDAEVFGILEVTKRSGESFVSSGGCG
subseq(6000,600 3762 gttcggacggaaagtggaagaccaggggtgatggaaatggttgttggtg
gtctctatgccaaataattgtaccacattgttatcagcgacttccgggg
acgtacattatagctttgtattatttaatctaatcaaaagactttaatt
SPP00000035_1.0 524 GX
G
GG
subseq(6000,600 3909 gg
gg
ca
//
Gene 1
Gene 2361 3914
Exon 2361 3914 phase 0
//
>subseq(6000,6000).[2361:3914].sp.tr
MKFTLVTILFLIFMKKAKIVMADLTFMYDLVVIGGGSGGMAAAKEAAKYGKKVALFDFVK
PSTQGTKWGLGGTCVNVGCVPKKLMHYSALISSSIHHDAQMFGHKTSSSFEWGKLVETLR
NHIRMLNFSYRTGLRVGNVEYINALAKLIDPHSVEYEDNGQKKTITSRYILLATGGRPSI
PETVPGAIQYSITSDDIFFLSKSPGKTLVIGASYIGLETAGFLNELGFDTTVAMRSIPLR
GFDRQCSEKIVEYMKATGTKFLVGVVPINIEKVNENIKVSFSDGSVEEFETVLYATGRNP
DVKGLNLNAVGVEVSDSGKIIAPKDATSVPSIFAVGDIVEGRPELTPVAVKAGILLARRL
FAGSNEFIDYDFVPTTVFTPIEYGHVGLSSEAAIAKYGEDDIEEYLSEFSTLEIAAAHRE
KPEHLRENEMDFALPLNCLAKLVVVKSQGEKVVGFHFVGPNAGEITQGFSLAVKLGATKK
DFDDMIGIHPTDAEVFGILEVTKRSGESFVSSGGCGGG
//
>subseq(6000,6000).[2361:3914].sp
ATGAAATTTACGCTAGTCACAATATTGTTTTTAATATTTATGAAAAAGGCGAAAATAGTC
ATGGCTGATCTAACATTTATGTATGATTTAGTTGTAATTGGTGGTGGTTCTGGTGGAATG
GCAGCTGCAAAAGAGGCAGCTAAGTATGGTAAAAAGGTGGCACTATTTGATTTTGTAAAG
CCTTCTACTCAAGGTACAAAGTGGGGACTAGGAGGAACATGCGTGAATGTGGGATGTGTA
CCAAAGAAGCTTATGCACTACTCAGCATTAATATCTAGTAGCATTCACCATGATGCTCAA
ATGTTTGGACACAAAACTAGTTCTAGCTTTGAATGGGGAAAATTAGTAGAAACTTTACGA
AATCATATAAGAATGCTTAACTTTAGCTACCGTACAGGACTACGTGTGGGTAATGTTGAA
TATATCAATGCACTGGCAAAGTTAATTGACCCCCACTCTGTTGAATATGAGGACAATGGC
CAGAAAAAAACAATCACTTCTAGATACATCTTATTAGCAACAGGAGGTCGACCCAGCATC
CCAGAAACCGTTCCGGGAGCTATCCAATATTCGATTACCTCTGATGATATCTTCTTTCTC
TCTAAAAGTCCTGGGAAGACTCTAGTCATTGGAGCTTCTTACATTGGATTAGAGACAGCT
GGGTTCCTAAATGAGTTAGGTTTCGATACAACAGTTGCAATGAGATCAATTCCATTGAGA
GGGTTCGACAGACAATGTTCTGAGAAGATTGTTGAATATATGAAGGCAACGGGAACTAAG
TTCCTTGTTGGTGTTGTACCAATTAACATTGAAAAGGTAAATGAGAATATTAAGGTGTCT
TTCAGCGATGGTTCTGTTGAAGAGTTTGAAACTGTTTTATATGCAACAGGTCGTAACCCA
GATGTAAAGGGACTTAATCTGAATGCTGTCGGAGTTGAAGTTTCGGATTCTGGTAAGATT
ATTGCCCCCAAAGATGCTACTTCTGTTCCAAGTATATTTGCAGTAGGAGATATTGTAGAG
GGAAGACCCGAACTAACTCCTGTTGCAGTTAAGGCTGGAATTCTTTTAGCAAGAAGGCTT
TTTGCTGGGTCTAACGAATTTATTGATTATGATTTTGTCCCTACTACCGTATTTACACCT
ATTGAATATGGGCATGTTGGGCTTTCATCCGAAGCTGCAATTGCTAAATATGGGGAGGAT
GATATTGAAGAGTATCTTTCCGAATTTAGTACGCTTGAAATTGCTGCTGCTCATAGAGAA
AAACCTGAGCATCTTCGCGAAAATGAGATGGACTTTGCACTTCCTTTAAACTGTTTGGCG
AAGCTTGTTGTAGTTAAGAGCCAAGGTGAAAAAGTTGTTGGATTCCATTTTGTTGGTCCT
AATGCTGGAGAAATTACTCAAGGATTCTCGCTTGCAGTCAAACTTGGTGCAACTAAAAAG
GACTTTGATGATATGATTGGAATTCATCCAACTGATGCTGAAGTATTTGGCATTTTAGAA
GTTACCAAAAGATCAGGAGAGTCATTCGTTTCTTCTGGAGGATGTGGTGGCGGA
//