TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000015_1.0 # Protein # Selenoprotein I (SelI) # Homo
sapiens # Complete
         (397 letters)

Database: genome 
           1422 sequences; 8,743,570 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AAEL01000078 [organism=Cryptosporidium hominis][strain=TU502][te...    67   7e-12
AAEL01000299 [organism=Cryptosporidium hominis][strain=TU502][te...    58   3e-09

>AAEL01000078 [organism=Cryptosporidium
             hominis][strain=TU502][tech=wgs][chromosome=4]
          Length = 22307

 Score = 66.6 bits (161), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 44/131 (33%), Positives = 67/131 (51%)
 Frame = +2

Query: 6     YVSPEQLAGFDKYKYSAVDTNPLSLYVMHPFWNTIVKVFPTWLAPNLITFSGFLLVVFNF 65
             ++S   L    +Y Y +     L  Y M+PFW       P  ++PNL+T  GFL  +   
Sbjct: 19331 FISEVGLKNIKEYSYKSGGVTFLD-YAMNPFWEFFAYQIPECISPNLLTIFGFLCSLIAM 19507

Query: 66    LLMAYFDPDFYASAPGHKHVPDWVWIVVGILNFVAYTLDGVDGKQARRTNSSTPLGELFD 125
             LL     P   ++      +P  + + + +L F+  T D  DGK ARR   S+PLG+L D
Sbjct: 19508 LLTMMTCPMLDSA------IPLNLSLFISLLLFLYQTFDAADGKHARRLKISSPLGQLLD 19669

Query: 126   HGLDSWSCVYF 136
             HGLDS++ ++F
Sbjct: 19670 HGLDSYTTIFF 19702


>AAEL01000299 [organism=Cryptosporidium
            hominis][strain=TU502][tech=wgs][chromosome=4]
          Length = 9228

 Score = 58.2 bits (139), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 4/119 (3%)
 Frame = -3

Query: 16   DKYKYSAVDTNPLSLYVMHPFWNTIVKVFPTWLAPNLITFSGFLLVVFNFLLMAYFDPD- 74
            ++YKY    T+PL  +V+ P  + IV   P +L+PNL+T  G + +  +F+++     + 
Sbjct: 8635 EEYKYVQPMTSPLYNHVISPVCDKIVGFLPKYLSPNLLTIIGLISISTSFIMLISIGENS 8456

Query: 75   ---FYASAPGHKHVPDWVWIVVGILNFVAYTLDGVDGKQARRTNSSTPLGELFDHGLDS 130
               ++ SA         +W + GI       +D +DGKQARR   S+  GE  DH +DS
Sbjct: 8455 KKLYFVSAA--------LWFLYGI-------IDNLDGKQARRLGVSSNSGEFIDHAIDS 8324


  Database: genome
    Posted date:  Jan 30, 2008  8:57 PM
  Number of letters in database: 8,743,570
  Number of sequences in database:  1422
  
Lambda     K      H
   0.327    0.141    0.464 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1422
Number of Hits to DB: 4,147,245
Number of extensions: 68845
Number of successful extensions: 518
Number of sequences better than 5.0e-02: 2
Number of HSP's gapped: 516
Number of HSP's successfully gapped: 2
Length of query: 397
Length of database: 2,914,523
Length adjustment: 93
Effective length of query: 304
Effective length of database: 2,782,277
Effective search space: 845812208
Effective search space used: 845812208
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 44 (21.6 bits)