|
|
| Sequence |
GGGTTTTCCT |
AGGAAAAGAG |
AGGATTTCCA |
| |
617 |
626 |
632 |
641 |
749 |
758 |
| Dissimilarity |
11.19% |
7.28% |
9.82% |
| RE equally |
0.14267 |
0.02518 |
0.09651 |
| RE query |
0.14943 |
0.03198 |
0.11331 |
Consensus sequence and matrix:
|
|
| 2 |
1 |
2 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
| 0 |
0 |
1 |
0 |
0 |
0 |
0 |
3 |
3 |
0 |
| 0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 0 |
1 |
0 |
2 |
3 |
3 |
3 |
0 |
0 |
1 |
|
|
|
Random Expectation (RE) gives the number of expected occurrences of the match
in a random sequence of the same length as the query sequence according to the dissimilarity index.
Two models are considered:
(1) Equiprobability for the 4 nucleotides (RE equally),
(2) Estimate the nucleotide probability as the nucleotide frequencies in the query sequence (RE query).