|
|
| Sequence |
CTCAAGAACA |
TAAAAGAACA |
| |
327 |
336 |
568 |
577 |
| Dissimilarity |
3.41% |
2.66% |
| RE equally |
0.05035 |
0.05350 |
| RE query |
0.05529 |
0.06096 |
Consensus sequence and matrix:
|
|
| 0 |
1 |
1 |
0 |
8 |
0 |
8 |
8 |
0 |
8 |
| 2 |
3 |
0 |
3 |
0 |
0 |
0 |
0 |
8 |
0 |
| 0 |
0 |
0 |
2 |
0 |
8 |
0 |
0 |
0 |
0 |
| 3 |
1 |
4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
Random Expectation (RE) gives the number of expected occurrences of the match
in a random sequence of the same length as the query sequence according to the dissimilarity index.
Two models are considered:
(1) Equiprobability for the 4 nucleotides (RE equally),
(2) Estimate the nucleotide probability as the nucleotide frequencies in the query sequence (RE query).