|
|
| Sequence |
ATTTTAGTCA |
TACTAAGTCA |
| |
26 |
35 |
499 |
508 |
| Dissimilarity |
10.41% |
6.31% |
| RE equally |
0.03357 |
0.02728 |
| RE query |
0.04058 |
0.03091 |
Consensus sequence and matrix:
|
|
| 0 |
1 |
1 |
0 |
1 |
4 |
0 |
0 |
0 |
4 |
| 2 |
1 |
2 |
0 |
0 |
0 |
0 |
0 |
4 |
0 |
| 1 |
0 |
0 |
0 |
3 |
0 |
4 |
0 |
0 |
0 |
| 0 |
1 |
0 |
4 |
0 |
0 |
0 |
4 |
0 |
0 |
|
|
|
Random Expectation (RE) gives the number of expected occurrences of the match
in a random sequence of the same length as the query sequence according to the dissimilarity index.
Two models are considered:
(1) Equiprobability for the 4 nucleotides (RE equally),
(2) Estimate the nucleotide probability as the nucleotide frequencies in the query sequence (RE query).