5AP-1 [T00029]
  was predicted in:

mm8_knownGene_NM_133435 range=chr4:148312488-148329942 5'pad=0 3'   TGACTCACTG
  36 45
Dissimilarity   1.89%  
RE equally   0.02098  
RE query   0.01730  

Consensus sequence and matrix:

A
C
G
T
0 1 1 0 1 4 0 0 0 4
2 1 2 0 0 0 0 0 4 0
1 0 0 0 3 0 4 0 0 0
0 1 0 4 0 0 0 4 0 0
C A C T G A G T C A


Random Expectation (RE) gives the number of expected occurrences of the match in a random sequence of the same length as the query sequence according to the dissimilarity index. Two models are considered:

 (1) Equiprobability for the 4 nucleotides (RE equally),
 (2) Estimate the nucleotide probability as the nucleotide frequencies in the query sequence (RE query).