|
|
| mm8_knownGene_NM_133435 range=chr4:148312488-148329942 5'pad=0 3' |
GGTGTTCCCTG |
CAGGGAAGGAC |
| |
962 |
972 |
1039 |
1049 |
| Dissimilarity |
6.25% |
9.05% |
| RE equally |
0.01731 |
0.05665 |
| RE query |
0.02493 |
0.05754 |
Consensus sequence and matrix:
|
|
| 0 |
1 |
1 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
| 0 |
0 |
1 |
1 |
0 |
0 |
6 |
6 |
6 |
4 |
0 |
| 6 |
4 |
3 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 0 |
1 |
1 |
2 |
6 |
6 |
0 |
0 |
0 |
0 |
0 |
|
|
|
Random Expectation (RE) gives the number of expected occurrences of the match
in a random sequence of the same length as the query sequence according to the dissimilarity index.
Two models are considered:
(1) Equiprobability for the 4 nucleotides (RE equally),
(2) Estimate the nucleotide probability as the nucleotide frequencies in the query sequence (RE query).