[clustalw.aln][clustalw.dnd][readme]
CLUSTAL W (1.83) Multiple Sequence Alignments Sequence type explicitly set to Protein Sequence format is Pearson Sequence 1: transcript_1 480 aa Sequence 2: transcript_2 468 aa Sequence 3: transcript_3 188 aa Sequence 4: transcript_4 472 aa Sequence 5: transcript_5 250 aa Start of Pairwise alignments Aligning... Sequences (1:2) Aligned. Score: 95.9402 Sequences (1:3) Aligned. Score: 92.0213 Sequences (1:4) Aligned. Score: 93.2203 Sequences (1:5) Aligned. Score: 94.8 Sequences (2:2) Aligned. Score: 100 Sequences (2:3) Aligned. Score: 91.4894 Sequences (2:4) Aligned. Score: 93.8034 Sequences (2:5) Aligned. Score: 94.4 Sequences (3:2) Aligned. Score: 91.4894 Sequences (3:3) Aligned. Score: 100 Sequences (3:4) Aligned. Score: 94.1489 Sequences (3:5) Aligned. Score: 94.1489 Sequences (4:2) Aligned. Score: 93.8034 Sequences (4:3) Aligned. Score: 94.1489 Sequences (4:4) Aligned. Score: 100 Sequences (4:5) Aligned. Score: 96.4 Sequences (5:2) Aligned. Score: 94.4 Sequences (5:3) Aligned. Score: 94.1489 Sequences (5:4) Aligned. Score: 96.4 Sequences (5:5) Aligned. Score: 100 Guide tree file created: [clustalw.dnd] Start of Multiple Alignment There are 4 groups Aligning... Group 1: Sequences: 2 Score:7600 Group 2: Sequences: 3 Score:3989 Group 3: Sequences: 2 Score:2973 Group 4: Sequences: 5 Score:4118 Alignment Score 16727 CLUSTAL-Alignment file created [clustalw.aln]
clustalw.aln
CLUSTAL W (1.83) multiple sequence alignment
transcript_1 MASDSIFESFPSYPQCFMRECILGMNPSRDVHDASTSRRFTPPSTALSPGKMSEALPLGA
transcript_2 ------------MPAAPRGPAQGEAAARTRSRDASTSRRFTPPSTALSPGKMSEALPLGA
transcript_5 ---------------------------MRIPVDASTSRRFTPPSTALSPGKMSEALPLGA
transcript_3 ---------------------------MRIPVDASTSRRFTPPSTALSPGKMSEALPLGA
transcript_4 ---------------------------MRIPVDASTSRRFTPPSTALSPGKMSEALPLGA
****************************
transcript_1 PDAGAALAGKLRSGDRSMVEVLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVA
transcript_2 PDAGAALAGKLRSGDRSMVEVLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVA
transcript_5 PDAGAALAGKLRSGDRSMVEVLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVA
transcript_3 PDAGAALAGKLRSGDRSMVEVLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVA
transcript_4 PDAGAALAGKLRSGDRSMVEVLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVA
************************************************************
transcript_1 LGDVPDGTLVTVMAGNDENYSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVF
transcript_2 LGDVPDGTLVTVMAGNDENYSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVF
transcript_5 LGDVPDGTLVTVMAGNDENYSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVF
transcript_3 LGDVPDGTLVTVMAGNDENYSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVF
transcript_4 LGDVPDGTLVTVMAGNDENYSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVF
************************************************************
transcript_1 TNPPQVATYHRAIKITVDGPREPRRHRQKLDDQTKPGSLSFSERLSELEQLRRTAMRVSP
transcript_2 TNPPQVATYHRAIKITVDGPREPRRHRQKLDDQTKPGSLSFSERLSELEQLRRTAMRVSP
transcript_5 TNPPQVATYHRAIKITVDGPREPRRHRQKLDDQTKPGSLSFSERLSELEQLRRTAMRVSP
transcript_3 TNPPQVATYHRAIKITVDGPREPRNSLTWPRYPHI-------------------------
transcript_4 TNPPQVATYHRAIKITVDGPREPRRHRQKLDDQTKPGSLSFSERLSELEQLRRTAMRVSP
************************.
transcript_1 HHPAPTPNPRASLNHSTAFNPQPQSQMQDTRQIQPSPPWSYDQSYQYLGSIASPSVHPAT
transcript_2 HHPAPTPNPRASLNHSTAFNPQPQSQMQDTRQIQPSPPWSYDQSYQYLGSIASPSVHPAT
transcript_5 HHPAPTPNPRASLNHSTAFNPQPQSQMQEEDTAPWRC-----------------------
transcript_3 ------------------------------------------------------------
transcript_4 HHPAPTPNPRASLNHSTAFNPQPQSQMQDTRQIQPSPPWSYDQSYQYLGSIASPSVHPAT
transcript_1 PISPGRASGMTTLSAELSSRLSTAPDLTAFSDPRQFPALPSISDPRMHYPGAFTYSPTPV
transcript_2 PISPGRASGMTTLSAELSSRLSTAPDLTAFSDPRQFPALPSISDPRMHYPGAFTYSPTPV
transcript_5 ------------------------------------------------------------
transcript_3 ------------------------------------------------------------
transcript_4 PISPGRASGMTTLSAELSSRLSTAPDLTAFSDPRQFPALPSISDPRMHYPGAFTYSPTPV
transcript_1 TSGIGIGMSAMGSATRYHTYLPPPYPGSSQAQGGPFQASSPSYHLYYGASAGSYQFSMVG
transcript_2 TSGIGIGMSAMGSATRYHTYLPPPYPGSSQAQGGPFQASSPSYHLYYGASAGSYQFSMVG
transcript_5 ------------------------------------------------------------
transcript_3 ------------------------------------------------------------
transcript_4 TSGIGIGMSAMGSATRYHTYLPPPYPGSSQAQGGPFQASSPSYHLYYGASAGSYQFSMVG
transcript_1 GERSPPRILPPCTNASTGSALLNPSLPNQSDVVEAEGSHSNSPTNMAPSARLEEAVWRPY
transcript_2 GERSPPRILPPCTNASTGSALLNPSLPNQSDVVEAEGSHSNSPTNMAPSARLEEAVWRPY
transcript_5 ------------------------------------------------------------
transcript_3 ------------------------------------------------------------
transcript_4 GERSPPRILPPCTNASTGSALLNPSLPNQSDVVEAEGSHSNSPTNMAPSAWRRPSRRDPG
transcript_1 -------------------
transcript_2 -------------------
transcript_5 -------------------
transcript_3 -------------------
transcript_4 PWARPPSWGRGRPTARISL
clustalw.dnd ( ( transcript_1:0.01972, transcript_2:0.02088) :0.01991, ( transcript_3:0.03927, transcript_4:0.01924) :0.00420, transcript_5:0.01380);