{\rtf1\ansi\ansicpg1252\deff0\deflang3082{\fonttbl{\f0\fswiss\fcharset0 Courier New;}{\f1\fswiss\fcharset0 Arial;}}
{\*\generator Msftedit 5.41.15.1507;}\viewkind4\uc1d\tx0\tx959\tx1918\tx2877\tx3836\tx4795\tx5754\tx6713\tx7672\tx8631\f0\fs20 TBLASTN 2.0MP-WashU [16-Jul-2004] [linux24-i786-ILP32F64 2004-07-16T10:57:18]
Copyright (C) 1996-2004 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2004) http://blast.wustl.edu
Query= 15-kDa
(162 letters)
WARNING: No precomputed values for Lambda, K and H are available for the
BLOSUM90 scoring matrix, regardless of the chosen gap penalties.
Unless overridden on the command line, computed values for ungapped
alignments will be used, but the E-values and P-values reported may
be much too low.
Database: Pan_troglodytes.CHIMP1A.nov.dna.contig.fa
361,863 sequences; 2,733,946,937 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
Reading High Probability
Sequences producing High-scoring Segment Pairs: Frame Score P(N) N
AADA01043058 dna:contig chromosome:CHIMP1A:1:85694382:... -2 257 1.8e-48 3
AADA01169184 dna:contig chromosome:CHIMP1A:1:85729849:... -1 257 4.6e-44 2
AADA01027984 dna:contig chromosome:CHIMP1A:7:126341459... +3 89 9.2e-11 5
>AADA01043058 dna:contig chromosome:CHIMP1A:1:85694382:85729748:1
Length = 35,367
Minus Strand HSPs:
Score = 257 (128.5 bits), Expect = 1.8e-48, Sum P(3) = 1.8e-48
Identities = 43/43 (100%), Positives = 43/43 (100%), Frame = -2
Query: 120 YVRGSDPVLKLLDDNGNIAEELSILKWNTDSVEEFLSEKLERI 162
YVRGSDPVLKLLDDNGNIAEELSILKWNTDSVEEFLSEKLERI
Sbjct: 6296 YVRGSDPVLKLLDDNGNIAEELSILKWNTDSVEEFLSEKLERI 6168
Score = 123 (62.7 bits), Expect = 1.8e-48, Sum P(3) = 1.8e-48
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = -1
Query: 82 LYAGAILEVCG*KLGRFPQVQ 102
LYAGAILEVCG*KLGRFPQVQ
Sbjct: 23370 LYAGAILEVCG*KLGRFPQVQ 23308
Score = 104 (53.4 bits), Expect = 1.8e-48, Sum P(3) = 1.8e-48
Identities = 19/20 (95%), Positives = 19/20 (95%), Frame = -1
Query: 103 AFVRSDKPKLFRGLQIKYVR 122
AFVRSDKPKLFRGLQIK VR
Sbjct: 10800 AFVRSDKPKLFRGLQIK-VR 10744
>AADA01169184 dna:contig chromosome:CHIMP1A:1:85729849:85772182:1
Length = 42,334
Minus Strand HSPs:
Score = 257 (128.5 bits), Expect = 4.6e-44, Sum P(2) = 4.6e-44
Identities = 46/64 (71%), Positives = 48/64 (75%), Frame = -1
Query: 26 VSAFGAEFSSEACRELGFXXXXXXXXXXXXGQFNLLQLDPDCRGCCQEEAQFETKK-LYA 84
VSAFGAEFSSEACRELGF GQFNLLQLDPDCRGCCQEEAQFETKK L++
Sbjct: 8764 VSAFGAEFSSEACRELGFSSNLLCSSCDLLGQFNLLQLDPDCRGCCQEEAQFETKKVLFS 8585
Query: 85 GAIL 88
L
Sbjct: 8584 SIFL 8573
Score = 156 (78.9 bits), Expect = 4.6e-44, Sum P(2) = 4.6e-44
Identities = 27/27 (100%), Positives = 27/27 (100%), Frame = -2
Query: 1 MAAGPSGCLVPAFGLRLLLATVLQAVS 27
MAAGPSGCLVPAFGLRLLLATVLQAVS
Sbjct: 19413 MAAGPSGCLVPAFGLRLLLATVLQAVS 19333
>AADA01027984 dna:contig chromosome:CHIMP1A:7:126341459:126399638:-1
Length = 58,180
Plus Strand HSPs:
Score = 89 (46.0 bits), Expect = 9.2e-11, Sum P(5) = 9.2e-11
Identities = 17/31 (54%), Positives = 19/31 (61%), Frame = +3
Query: 56 GQFNLLQLDPDCRGCCQEEAQFETKKLYAGA 86
G F LLQLDP+CR Q QFE + L GA
Sbjct: 54516 GLFTLLQLDPNCREYYQRKVQFENRSLDVGA 54608
Score = 77 (40.1 bits), Expect = 9.2e-11, Sum P(5) = 9.2e-11
Identities = 17/30 (56%), Positives = 20/30 (66%), Frame = +1
Query: 2 AAGPSGCLVPAFGLRLLLATVLQAVSAFGA 31
AAG S CL AFG++L AT Q +AFGA
Sbjct: 54370 AAGESRCLGLAFGMQLPRATASQVLAAFGA 54459
Score = 55 (29.3 bits), Expect = 9.2e-11, Sum P(5) = 9.2e-11
Identities = 10/14 (71%), Positives = 12/14 (85%), Frame = +2
Query: 135 GNIAEELSILKWNT 148
GN+ EELSIL+ NT
Sbjct: 54716 GNMTEELSILR*NT 54757
Score = 47 (25.4 bits), Expect = 9.2e-11, Sum P(5) = 9.2e-11
Identities = 12/20 (60%), Positives = 13/20 (65%), Frame = +3
Query: 112 LFRGLQIKYVRGSDPVLKLL 131
L + LQI YV D VLKLL
Sbjct: 54657 LSKRLQIIYV*AFDLVLKLL 54716
Score = 45 (24.4 bits), Expect = 9.2e-11, Sum P(5) = 9.2e-11
Identities = 8/13 (61%), Positives = 10/13 (76%), Frame = +1
Query: 87 ILEVCG*KLGRFP 99
+ E+C *KLGR P
Sbjct: 54607 LFEICI*KLGRIP 54645
Parameters:
matrix=BLOSUM90
T=16
filter=seg
B=100
E=0.1
W=4
hitdist=40
ctxfactor=6.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM90 0.340 0.198 0.788 same same same
Q=9,R=2 0.340 0.198 0.788 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 162 150 0.10 79 4 16 21 0.072 34
27 0.072 34
Statistics:
Database: /data/blastdb/ensembl/Pan_troglodytes.CHIMP1A.nov.dna.contig.fa
Title: Pan_troglodytes.CHIMP1A.nov.dna.contig.fa
Posted: 4:41:53 PM GMT Nov 1, 2005
Created: 12:51:32 PM GMT Nov 1, 2005
Format: XDF-1
# of letters in database: 2,733,946,937
# of sequences in database: 361,863
# of database sequences satisfying E: 3
No. of states in DFA: 6542 (690 KB)
Total size of DFA: 993 KB (2199 KB)
Time to generate neighborhood: 0.01u 0.00s 0.01t Elapsed: 00:00:00
No. of threads or processors used: 2
Search cpu time: 193.93u 22.89s 216.82t Elapsed: 00:02:33
Total cpu time: 193.95u 22.89s 216.84t Elapsed: 00:02:33
Start: Tue Mar 7 17:12:33 2006 End: Tue Mar 7 17:15:06 2006
WARNINGS ISSUED: 1
##########################################################################################
TBLASTN 2.0MP-WashU [16-Jul-2004] [linux24-i786-ILP32F64 2004-07-16T10:57:18]
Copyright (C) 1996-2004 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2004) http://blast.wustl.edu
Query= DI1
(249 letters)
WARNING: No precomputed values for Lambda, K and H are available for the
BLOSUM90 scoring matrix, regardless of the chosen gap penalties.
Unless overridden on the command line, computed values for ungapped
alignments will be used, but the E-values and P-values reported may
be much too low.
Database: Pan_troglodytes.CHIMP1A.nov.dna.contig.fa
361,863 sequences; 2,733,946,937 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
Reading High Probability
Sequences producing High-scoring Segment Pairs: Frame Score P(N) N
AADA01045341 dna:contig chromosome:CHIMP1A:1:52330546:... +1 419 9.6e-102 3
AADA01045340 dna:contig chromosome:CHIMP1A:1:52302992:... +2 525 5.6e-73 2
AADA01177543 dna:contig chromosome:CHIMP1A:14:10170638... +2 418 4.1e-51 1
AADA01360621 dna:contig chromosome:CHIMP1A:14:79802385... +1 372 3.3e-44 1
>AADA01045341 dna:contig chromosome:CHIMP1A:1:52330546:52345697:1
Length = 15,152
Plus Strand HSPs:
Score = 419 (207.0 bits), Expect = 9.6e-102, Sum P(3) = 9.6e-102
Identities = 66/67 (98%), Positives = 67/67 (100%), Frame = +1
Query: 161 DGWAFKNNMDIRNHQNLQDRLQAAHLLLARSPQCPVVVDTMQNQSSQLYAALPERLYIIQ 220
DGWAFKNNMDIRNHQNLQDRLQAAHLLLARSPQCPVVVDTMQNQSSQLYAALPERLY+IQ
Sbjct: 3316 DGWAFKNNMDIRNHQNLQDRLQAAHLLLARSPQCPVVVDTMQNQSSQLYAALPERLYVIQ 3495
Query: 221 EGRILYK 227
EGRILYK
Sbjct: 3496 EGRILYK 3516
Score = 288 (143.0 bits), Expect = 9.6e-102, Sum P(3) = 9.6e-102
Identities = 47/48 (97%), Positives = 48/48 (100%), Frame = +1
Query: 113 GNRPLVLNFGSCT*PSFMFKFDQFKRLIEDFSSIADFLVIYIEEAHAS 160
GNRPLVLNFGSCT*PSFMFKFDQFKRLIEDFSSIADFLV+YIEEAHAS
Sbjct: 1888 GNRPLVLNFGSCT*PSFMFKFDQFKRLIEDFSSIADFLVVYIEEAHAS 2031
Score = 144 (72.7 bits), Expect = 9.6e-102, Sum P(3) = 9.6e-102
Identities = 23/25 (92%), Positives = 24/25 (96%), Frame = +1
Query: 225 LYKGKSGPWNYNPEEVRAVLEKLHS 249
L +GKSGPWNYNPEEVRAVLEKLHS
Sbjct: 7204 LLQGKSGPWNYNPEEVRAVLEKLHS 7278
>AADA01045340 dna:contig chromosome:CHIMP1A:1:52302992:52330418:1
Length = 27,427
Plus Strand HSPs:
Score = 525 (258.7 bits), Expect = 5.6e-73, Sum P(2) = 5.6e-73
Identities = 80/81 (98%), Positives = 80/81 (98%), Frame = +2
Query: 33 FPDRVKRNILAMGEKTGMTRNPHFSHDNWIPTFFSTQYFWFVLKVRWQRLEDTTELGGLA 92
FPDRVKRNILAMGEKTGMTRNPHFSHDNWIPTFFSTQYFWFVLKVRWQRLEDTTELGGLA
Sbjct: 19085 FPDRVKRNILAMGEKTGMTRNPHFSHDNWIPTFFSTQYFWFVLKVRWQRLEDTTELGGLA 19264
Query: 93 PNCPVVRLSGQRCNIWEFMQG 113
PNCPVV LSGQRCNIWEFMQG
Sbjct: 19265 PNCPVVHLSGQRCNIWEFMQG 19327
Score = 80 (41.4 bits), Expect = 5.6e-73, Sum P(2) = 5.6e-73
Identities = 12/12 (100%), Positives = 12/12 (100%), Frame = +2
Query: 1 MGLPQPGLWLKR 12
MGLPQPGLWLKR
Sbjct: 18989 MGLPQPGLWLKR 19024
>AADA01177543 dna:contig chromosome:CHIMP1A:14:101706382:101716454:1
Length = 10,073
Plus Strand HSPs:
Score = 418 (206.5 bits), Expect = 4.1e-51, P = 4.1e-51
Identities = 86/178 (48%), Positives = 103/178 (57%), Frame = +2
Query: 75 LKVRW--QRLE--DTTELGGLAPNCPVVRLSG-QRCNIWEFMQGNRPLVLNFGSCT*PSF 129
LK W Q+L+ GG APN VV G Q I ++ QGNRPLVLNFGSCT*P F
Sbjct: 47 LKAVWHGQKLDFFKQAHEGGPAPNSEVVLPDGFQSQHILDYAQGNRPLVLNFGSCT*PPF 226
Query: 130 MFKFDQFKRLIEDFSSIADFLVIYIEEAHASDGWAFKNNMDI-RNHQNLQDRLQAAHLLL 188
M + F+RL+ + DFL+IYIEEAH SDGW + I H+ L+DR AA L
Sbjct: 227 MARMSAFQRLVTKYQRDVDFLIIYIEEAHPSDGWVTTDSPYIIPQHRSLEDRVSAARVLQ 406
Query: 189 ARSPQCPVVVDTMQNQSSQLYAALPERLYIIQEGRILYKGKSGPWNYNPEEVRAVLEK 246
+P C V DTM N SS Y A ERLY+IQ G I+Y+G GP Y E R LE+
Sbjct: 407 QGAPGCALVLDTMANSSSSAYGAYFERLYVIQSGTIMYQGGRGPDGYQVSELRTWLER 580
>AADA01360621 dna:contig chromosome:CHIMP1A:14:79802385:79839743:-1
Length = 37,359
Plus Strand HSPs:
Score = 372 (184.0 bits), Expect = 3.3e-44, P = 3.3e-44
Identities = 72/152 (47%), Positives = 93/152 (61%), Frame = +1
Query: 102 GQRCNIWEFMQGNRPLVLNFGSCT*PSFMFKFDQFKRLIEDFSSIADFLVIYIEEAHASD 161
G C + +F RPLV NFGS T*P F + F++L+E+FSS+ADFL +YI+EAH SD
Sbjct: 14662 GATCHLLDFASPERPLVVNFGSAT*PPFTSQLPAFRKLVEEFSSVADFLLVYIDEAHPSD 14841
Query: 162 GWAFKNN----MDIRNHQNLQDRLQAAHLLLAR-S--PQCPVVVDTMQNQSSQLYAALPE 214
GWA + +++ HQN +DR AA+ LL R S PQC VV D+M N + Y E
Sbjct: 14842 GWAIPGDSSLSFEVKKHQNQEDRCAAAQQLLERFSLPPQCRVVADSMDNNANIAYGVAFE 15021
Query: 215 RLYIIQEGRILYKGKSGPWNYNPEEVRAVLEK 246
R I+Q +I Y G GP YN +EVR LEK
Sbjct: 15022 RVCIVQRQKIAYLGGKGPFSYNLQEVRHWLEK 15117
Parameters:
matrix=BLOSUM90
T=16
filter=seg
B=100
E=0.1
W=4
hitdist=40
ctxfactor=6.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM90 0.338 0.194 0.822 same same same
Q=9,R=2 0.338 0.194 0.822 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 249 229 0.10 81 4 16 21 0.060 36
29 0.060 36
Statistics:
Database: /data/blastdb/ensembl/Pan_troglodytes.CHIMP1A.nov.dna.contig.fa
Title: Pan_troglodytes.CHIMP1A.nov.dna.contig.fa
Posted: 4:41:53 PM GMT Nov 1, 2005
Created: 12:51:32 PM GMT Nov 1, 2005
Format: XDF-1
# of letters in database: 2,733,946,937
# of sequences in database: 361,863
# of database sequences satisfying E: 4
No. of states in DFA: 10,500 (1108 KB)
Total size of DFA: 1800 KB (3415 KB)
Time to generate neighborhood: 0.01u 0.00s 0.01t Elapsed: 00:00:00
No. of threads or processors used: 2
Search cpu time: 361.98u 11.00s 372.98t Elapsed: 00:04:03
Total cpu time: 362.00u 11.03s 373.03t Elapsed: 00:04:03
Start: Tue Mar 7 17:04:24 2006 End: Tue Mar 7 17:08:27 2006
WARNINGS ISSUED: 1
d\f1
############################################################################################################################################
d\tx0\tx959\tx1918\tx2877\tx3836\tx4795\tx5754\tx6713\tx7672\tx8631\f0 TBLASTN 2.0MP-WashU [16-Jul-2004] [linux24-i786-ILP32F64 2004-07-16T10:57:18]
Copyright (C) 1996-2004 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2004) http://blast.wustl.edu
Query= DI2
(265 letters)
WARNING: No precomputed values for Lambda, K and H are available for the
BLOSUM90 scoring matrix, regardless of the chosen gap penalties.
Unless overridden on the command line, computed values for ungapped
alignments will be used, but the E-values and P-values reported may
be much too low.
Database: Pan_troglodytes.CHIMP1A.nov.dna.contig.fa
361,863 sequences; 2,733,946,937 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
Reading High Probability
Sequences producing High-scoring Segment Pairs: Frame Score P(N) N
AADA01360621 dna:contig chromosome:CHIMP1A:14:79802385... +1 1178 5.1e-225 2
AADA01177543 dna:contig chromosome:CHIMP1A:14:10170638... +2 361 1.1e-46 2
AADA01045341 dna:contig chromosome:CHIMP1A:1:52330546:... +1 174 1.4e-29 3
AADA01172063 dna:contig chromosome:CHIMP1A:5:183838823... -1 80 0.054 2
>AADA01360621 dna:contig chromosome:CHIMP1A:14:79802385:79839743:-1
Length = 37,359
Plus Strand HSPs:
Score = 1178 (578.5 bits), Expect = 5.1e-225, Sum P(2) = 5.1e-225
Identities = 191/194 (98%), Positives = 192/194 (98%), Frame = +1
Query: 72 YKQVKLGEDAPNSSVVHVSSTEGGDNSGNGTQEKIAEGATCHLLDFASPERPLVVNFGSA 131
Y+QVKLGEDAPNSSVVHVSS EGGDNSGNGTQEKIAEGATCHLLDFASPERPLVVNFGSA
Sbjct: 14551 YRQVKLGEDAPNSSVVHVSSAEGGDNSGNGTQEKIAEGATCHLLDFASPERPLVVNFGSA 14730
Query: 132 T*PPFTSQLPAFRKLVEEFSSVADFLLVYIDEAHPSDGWAIPGDSSLSFEVKKHQNQEDR 191
T*PPFTSQLPAFRKLVEEFSSVADFLLVYIDEAHPSDGWAIPGDSSLSFEVKKHQNQEDR
Sbjct: 14731 T*PPFTSQLPAFRKLVEEFSSVADFLLVYIDEAHPSDGWAIPGDSSLSFEVKKHQNQEDR 14910
Query: 192 CAAAQQLLERFSLPPQCRVVADRMDNNANIAYGVAFERVCIVQRQKIAYLGGKGPFSYNL 251
CAAAQQLLERFSLPPQCRVVAD MDNNANIAYGVAFERVCIVQRQKIAYLGGKGPFSYNL
Sbjct: 14911 CAAAQQLLERFSLPPQCRVVADSMDNNANIAYGVAFERVCIVQRQKIAYLGGKGPFSYNL 15090
Query: 252 QEVRHWLEKNFSKR 265
QEVRHWLEKNFSKR
Sbjct: 15091 QEVRHWLEKNFSKR 15132
Score = 448 (221.5 bits), Expect = 5.1e-225, Sum P(2) = 5.1e-225
Identities = 75/75 (100%), Positives = 75/75 (100%), Frame = +2
Query: 1 MGILSVDLLITLQILPVFFSNCLFLALYDSVILLKHVVLLLSRSKSTRGEWRRMLTSEGL 60
MGILSVDLLITLQILPVFFSNCLFLALYDSVILLKHVVLLLSRSKSTRGEWRRMLTSEGL
Sbjct: 6344 MGILSVDLLITLQILPVFFSNCLFLALYDSVILLKHVVLLLSRSKSTRGEWRRMLTSEGL 6523
Query: 61 RCVWKSFLLDAYKQV 75
RCVWKSFLLDAYKQV
Sbjct: 6524 RCVWKSFLLDAYKQV 6568
Score = 52 (27.8 bits), Expect = 4.2e-56, Sum P(2) = 4.2e-56
Identities = 8/15 (53%), Positives = 13/15 (86%), Frame = +1
Query: 145 KLVEEFSSVADFLLV 159
K VEE++S++D LL+
Sbjct: 8284 KQVEEYTSISDILLI 8328
>AADA01177543 dna:contig chromosome:CHIMP1A:14:101706382:101716454:1
Length = 10,073
Plus Strand HSPs:
Score = 361 (178.9 bits), Expect = 1.1e-46, Sum P(2) = 1.1e-46
Identities = 68/148 (45%), Positives = 92/148 (62%), Frame = +2
Query: 113 HLLDFASPERPLVVNFGSAT*PPFTSQLPAFRKLVEEFSSVADFLLVYIDEAHPSDGWAI 172
H+LD+A RPLV NFGS T*PPF +++ AF++LV + DFL++YI+EAHPSDGW +
Sbjct: 155 HILDYAQGNRPLVLNFGSCT*PPFMARMSAFQRLVTKYQRDVDFLIIYIEEAHPSDGW-V 331
Query: 173 PGDSSLSFEVKKHQNQEDRCAAAQQLLERFSLPPQCRVVADRMDNNANIAYGVAFERVCI 232
DS + + +H+ EDR +AA+ L + P C V D M N + AYG FER +
Sbjct: 332 TTDSP--YIIPQHRSLEDRVSAARVLQQG---APGCALVLDTMANSSSSAYGAYFERLYV 496
Query: 233 VQRQKIAYLGGKGPFSYNLQEVRHWLEK 260
+Q I Y GG+GP Y E R WLE+
Sbjct: 497 IQSGTIMYQGGRGPDGYQVSELRTWLER 580
Score = 73 (38.1 bits), Expect = 1.1e-46, Sum P(2) = 1.1e-46
Identities = 16/35 (45%), Positives = 19/35 (54%), Frame = +2
Query: 53 RMLTSEGLRCVWKSFLLDAYKQVKLGEDAPNSSVV 87
R+ T L+ VW LD +KQ G APNS VV
Sbjct: 26 RLCTLASLKAVWHGQKLDFFKQAHEGGPAPNSEVV 130
>AADA01045341 dna:contig chromosome:CHIMP1A:1:52330546:52345697:1
Length = 15,152
Plus Strand HSPs:
Score = 174 (87.5 bits), Expect = 1.4e-29, Sum P(3) = 1.4e-29
Identities = 30/49 (61%), Positives = 37/49 (75%), Frame = +1
Query: 119 SPERPLVVNFGSAT*PPFTSQLPAFRKLVEEFSSVADFLLVYIDEAHPS 167
S RPLV NFGS T*P F + F++L+E+FSS+ADFL VYI+EAH S
Sbjct: 1885 SGNRPLVLNFGSCT*PSFMFKFDQFKRLIEDFSSIADFLVVYIEEAHAS 2031
Score = 129 (65.5 bits), Expect = 1.4e-29, Sum P(3) = 1.4e-29
Identities = 28/73 (38%), Positives = 38/73 (52%), Frame = +1
Query: 168 DGWAIPGDSSLSFEVKKHQNQEDRCAAAQQLLERFSLPPQCRVVADRMDNNANIAYGVAF 227
DGWA + +++ HQN +DR AA+ LL R PQC VV D M N + Y
Sbjct: 3316 DGWAFKNN----MDIRNHQNLQDRLQAAHLLLAR---SPQCPVVVDTMQNQSSQLYAALP 3474
Query: 228 ERVCIVQRQKIAY 240
ER ++Q +I Y
Sbjct: 3475 ERLYVIQEGRILY 3513
Score = 61 (32.2 bits), Expect = 1.4e-29, Sum P(3) = 1.4e-29
Identities = 13/21 (61%), Positives = 14/21 (66%), Frame = +1
Query: 241 LGGK-GPFSYNLQEVRHWLEK 260
L GK GP YN +EVR LEK
Sbjct: 7207 LQGKSGPWNYNPEEVRAVLEK 7269
>AADA01172063 dna:contig chromosome:CHIMP1A:5:183838823:183846063:-1
Length = 7241
Minus Strand HSPs:
Score = 80 (41.5 bits), Expect = 0.055, Sum P(2) = 0.054
Identities = 27/63 (42%), Positives = 32/63 (50%), Frame = -1
Query: 119 SPERP--LVVNFGSAT*PPFTSQLPAFRKLVEEFSSVADFLLVYIDEAHPSDGWAIPGDS 176
+P RP L+ G + PPF SQ P FR L FS FLLV + E P W P S
Sbjct: 4772 TPHRPNLLISS*GLS--PPF-SQAPHFRGLWKAFSLPPGFLLVLMTE--P---WLTPVFS 4617
Query: 177 SLS 179
SL+
Sbjct: 4616 SLA 4608
Score = 49 (26.3 bits), Expect = 0.055, Sum P(2) = 0.054
Identities = 7/11 (63%), Positives = 10/11 (90%), Frame = -3
Query: 60 LRCVWKSFLLD 70
++CVWKS +LD
Sbjct: 6627 MKCVWKSNILD 6595
Parameters:
matrix=BLOSUM90
T=16
filter=seg
B=100
E=0.1
W=4
hitdist=40
ctxfactor=6.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM90 0.339 0.194 0.776 same same same
Q=9,R=2 0.339 0.194 0.776 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 265 265 0.10 81 4 16 21 0.069 36
29 0.069 36
Statistics:
Database: /data/blastdb/ensembl/Pan_troglodytes.CHIMP1A.nov.dna.contig.fa
Title: Pan_troglodytes.CHIMP1A.nov.dna.contig.fa
Posted: 4:41:53 PM GMT Nov 1, 2005
Created: 12:51:32 PM GMT Nov 1, 2005
Format: XDF-1
# of letters in database: 2,733,946,937
# of sequences in database: 361,863
# of database sequences satisfying E: 4
No. of states in DFA: 10,107 (1066 KB)
Total size of DFA: 1662 KB (3369 KB)
Time to generate neighborhood: 0.02u 0.00s 0.02t Elapsed: 00:00:00
No. of threads or processors used: 2
Search cpu time: 281.34u 2.56s 283.90t Elapsed: 00:02:37
Total cpu time: 281.37u 2.56s 283.93t Elapsed: 00:02:38
Start: Tue Mar 7 17:10:18 2006 End: Tue Mar 7 17:12:56 2006
WARNINGS ISSUED: 1
d\f1
############################################################################################################################################
d\tx0\tx959\tx1918\tx2877\tx3836\tx4795\tx5754\tx6713\tx7672\tx8631\f0 TBLASTN 2.0MP-WashU [16-Jul-2004] [linux24-i786-ILP32F64 2004-07-16T10:57:18]
Copyright (C) 1996-2004 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2004) http://blast.wustl.edu
Query= DI3
(278 letters)
WARNING: No precomputed values for Lambda, K and H are available for the
BLOSUM90 scoring matrix, regardless of the chosen gap penalties.
Unless overridden on the command line, computed values for ungapped
alignments will be used, but the E-values and P-values reported may
be much too low.
Database: Pan_troglodytes.CHIMP1A.nov.dna.contig.fa
361,863 sequences; 2,733,946,937 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
Reading High Probability
Sequences producing High-scoring Segment Pairs: Frame Score P(N) N
AADA01177543 dna:contig chromosome:CHIMP1A:14:10170638... +2 1241 7.2e-174 1
AADA01360621 dna:contig chromosome:CHIMP1A:14:79802385... +1 364 1.5e-42 2
AADA01045341 dna:contig chromosome:CHIMP1A:1:52330546:... +1 185 1.3e-33 2
>AADA01177543 dna:contig chromosome:CHIMP1A:14:101706382:101716454:1
Length = 10,073
Plus Strand HSPs:
Score = 1241 (608.3 bits), Expect = 7.2e-174, P = 7.2e-174
Identities = 199/199 (100%), Positives = 199/199 (100%), Frame = +2
Query: 80 NRLCTLASLKAVWHGQKLDFFKQAHEGGPAPNSEVVLPDGFQSQHILDYAQGNRPLVLNF 139
NRLCTLASLKAVWHGQKLDFFKQAHEGGPAPNSEVVLPDGFQSQHILDYAQGNRPLVLNF
Sbjct: 23 NRLCTLASLKAVWHGQKLDFFKQAHEGGPAPNSEVVLPDGFQSQHILDYAQGNRPLVLNF 202
Query: 140 GSCT*PPFMARMSAFQRLVTKYQRDVDFLIIYIEEAHPSDGWVTTDSPYIIPQHRSLEDR 199
GSCT*PPFMARMSAFQRLVTKYQRDVDFLIIYIEEAHPSDGWVTTDSPYIIPQHRSLEDR
Sbjct: 203 GSCT*PPFMARMSAFQRLVTKYQRDVDFLIIYIEEAHPSDGWVTTDSPYIIPQHRSLEDR 382
Query: 200 VSAARVLQQGAPGCALVLDTMANSSSSAYGAYFERLYVIQSGTIMYQGGRGPDGYQVSEL 259
VSAARVLQQGAPGCALVLDTMANSSSSAYGAYFERLYVIQSGTIMYQGGRGPDGYQVSEL
Sbjct: 383 VSAARVLQQGAPGCALVLDTMANSSSSAYGAYFERLYVIQSGTIMYQGGRGPDGYQVSEL 562
Query: 260 RTWLERYDEQLHGARPRRV 278
RTWLERYDEQLHGARPRRV
Sbjct: 563 RTWLERYDEQLHGARPRRV 619
>AADA01360621 dna:contig chromosome:CHIMP1A:14:79802385:79839743:-1
Length = 37,359
Plus Strand HSPs:
Score = 364 (180.1 bits), Expect = 1.5e-42, Sum P(2) = 1.5e-42
Identities = 68/148 (45%), Positives = 93/148 (62%), Frame = +1
Query: 124 HILDYAQGNRPLVLNFGSCT*PPFMARMSAFQRLVTKYQRDVDFLIIYIEEAHPSDGW-V 182
H+LD+A RPLV NFGS T*PPF +++ AF++LV + DFL++YI+EAHPSDGW +
Sbjct: 14674 HLLDFASPERPLVVNFGSAT*PPFTSQLPAFRKLVEEFSSVADFLLVYIDEAHPSDGWAI 14853
Query: 183 TTDSP--YIIPQHRSLEDRVSAARVLQQG---APGCALVLDTMANSSSSAYGAYFERLYV 237
DS + + +H+ EDR +AA+ L + P C V D+M N + AYG FER +
Sbjct: 14854 PGDSSLSFEVKKHQNQEDRCAAAQQLLERFSLPPQCRVVADSMDNNANIAYGVAFERVCI 15033
Query: 238 IQSGTIMYQGGRGPDGYQVSELRTWLER 265
+Q I Y GG+GP Y E R WLE+
Sbjct: 15034 VQRQKIAYLGGKGPFSYNLQEVRHWLEK 15117
Score = 47 (25.3 bits), Expect = 1.5e-42, Sum P(2) = 1.5e-42
Identities = 9/17 (52%), Positives = 11/17 (64%), Frame = +1
Query: 99 FFKQAHEGGPAPNSEVV 115
F++Q G APNS VV
Sbjct: 14548 FYRQVKLGEDAPNSSVV 14598
>AADA01045341 dna:contig chromosome:CHIMP1A:1:52330546:52345697:1
Length = 15,152
Plus Strand HSPs:
Score = 185 (92.7 bits), Expect = 1.3e-33, Sum P(2) = 1.3e-33
Identities = 33/59 (55%), Positives = 42/59 (71%), Frame = +1
Query: 121 QSQHILDYA-QGNRPLVLNFGSCT*PPFMARMSAFQRLVTKYQRDVDFLIIYIEEAHPS 178
+SQ ++ A GNRPLVLNFGSCT*P FM + F+RL+ + DFL++YIEEAH S
Sbjct: 1855 ESQFVMVVAVSGNRPLVLNFGSCT*PSFMFKFDQFKRLIEDFSSIADFLVVYIEEAHAS 2031
Score = 165 (82.9 bits), Expect = 1.3e-33, Sum P(2) = 1.3e-33
Identities = 38/83 (45%), Positives = 43/83 (51%), Frame = +1
Query: 179 DGWVTTDSPYIIPQHRSLEDRVSAARVLQQGAPGCALVLDTMANSSSSAYGAYFERLYVI 238
DGW + I H+ L+DR AA L +P C V DTM N SS Y A ERLYVI
Sbjct: 3316 DGWAFKNNMDI-RNHQNLQDRLQAAHLLLARSPQCPVVVDTMQNQSSQLYAALPERLYVI 3492
Query: 239 QSGTIMY---------QGG-RGP 251
Q G I+Y QGG RGP
Sbjct: 3493 QEGRILYKVVTWGQGAQGGQRGP 3561
Score = 45 (24.3 bits), Expect = 3.2e-16, Sum P(2) = 3.2e-16
Identities = 8/12 (66%), Positives = 9/12 (75%), Frame = +3
Query: 189 IIPQHRSLEDRV 200
I+P H SL DRV
Sbjct: 6327 IVPVHSSLGDRV 6362
Parameters:
matrix=BLOSUM90
T=16
filter=seg
B=100
E=0.1
W=4
hitdist=40
ctxfactor=6.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM90 0.338 0.196 0.816 same same same
Q=9,R=2 0.338 0.196 0.816 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 278 267 0.10 82 4 16 21 0.072 36
29 0.072 36
Statistics:
Database: /data/blastdb/ensembl/Pan_troglodytes.CHIMP1A.nov.dna.contig.fa
Title: Pan_troglodytes.CHIMP1A.nov.dna.contig.fa
Posted: 4:41:53 PM GMT Nov 1, 2005
Created: 12:51:32 PM GMT Nov 1, 2005
Format: XDF-1
# of letters in database: 2,733,946,937
# of sequences in database: 361,863
# of database sequences satisfying E: 3
No. of states in DFA: 9970 (1052 KB)
Total size of DFA: 1689 KB (3388 KB)
Time to generate neighborhood: 0.01u 0.01s 0.02t Elapsed: 00:00:00
No. of threads or processors used: 2
Search cpu time: 322.36u 2.76s 325.12t Elapsed: 00:02:01
Total cpu time: 322.37u 2.77s 325.14t Elapsed: 00:02:01
Start: Tue Mar 7 17:21:23 2006 End: Tue Mar 7 17:23:24 2006
WARNINGS ISSUED: 1
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d\tx0\tx959\tx1918\tx2877\tx3836\tx4795\tx5754\tx6713\tx7672\tx8631\f0 TBLASTN 2.0MP-WashU [16-Jul-2004] [linux24-i786-ILP32F64 2004-07-16T10:57:18]
Copyright (C) 1996-2004 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2004) http://blast.wustl.edu
Query= GPx1
(201 letters)
WARNING: No precomputed values for Lambda, K and H are available for the
BLOSUM90 scoring matrix, regardless of the chosen gap penalties.
Unless overridden on the command line, computed values for ungapped
alignments will be used, but the E-values and P-values reported may
be much too low.
Database: Pan_troglodytes.CHIMP1A.nov.dna.contig.fa
361,863 sequences; 2,733,946,937 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
Reading High Probability
Sequences producing High-scoring Segment Pairs: Frame Score P(N) N
AADA01275713 dna:contig chromosome:CHIMP1A:2_random:38... +3 747 4.7e-152 2
AADA01212312 dna:contig chromosome:CHIMP1A:X:13576745:... -1 1040 3.2e-144 1
AADA01010844 dna:contig chromosome:CHIMP1A:21:27408845... +2 416 8.0e-124 4
AADA01084509 dna:contig chromosome:CHIMP1A:14:64069426... +1 489 3.9e-93 2
AADA01270126 dna:contig chromosome:CHIMP1A:5:157302916... +3 150 7.3e-35 3
AADA01258500 dna:contig chromosome:CHIMP1A:6:29055823:... -3 128 1.9e-28 3
AADA01025839 dna:contig chromosome:CHIMP1A:1:50996614:... +3 184 2.1e-16 1
AADA01228737 dna:contig chromosome:CHIMP1A:6:29087215:... +1 156 3.1e-12 1
AADA01197782 dna:contig chromosome:CHIMP1A:20_random:2... -3 134 5.5e-09 1
AADA01264960 dna:contig chromosome:CHIMP1A:5:61722612:... -3 131 1.6e-08 1
>AADA01275713 dna:contig chromosome:CHIMP1A:2_random:38844896:38848789:1
Length = 3894
Plus Strand HSPs:
Score = 747 (366.8 bits), Expect = 4.7e-152, Sum P(2) = 4.7e-152
Identities = 119/119 (100%), Positives = 119/119 (100%), Frame = +3
Query: 83 ENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALM 142
ENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALM
Sbjct: 972 ENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALM 1151
Query: 143 TDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEALLSQGPSCA 201
TDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEALLSQGPSCA
Sbjct: 1152 TDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEALLSQGPSCA 1328
Score = 377 (186.3 bits), Expect = 4.7e-152, Sum P(2) = 4.7e-152
Identities = 63/63 (100%), Positives = 63/63 (100%), Frame = +2
Query: 20 RPLAGGEPVSLGSLRGKVLLIENVASL*GTTVRDYTQMNELQRRLGPRGLVVLGFPCNQF 79
RPLAGGEPVSLGSLRGKVLLIENVASL*GTTVRDYTQMNELQRRLGPRGLVVLGFPCNQF
Sbjct: 509 RPLAGGEPVSLGSLRGKVLLIENVASL*GTTVRDYTQMNELQRRLGPRGLVVLGFPCNQF 688
Query: 80 GHQ 82
GHQ
Sbjct: 689 GHQ 697
>AADA01212312 dna:contig chromosome:CHIMP1A:X:13576745:13585092:1
Length = 8348
Minus Strand HSPs:
Score = 1040 (509.8 bits), Expect = 3.2e-144, P = 3.2e-144
Identities = 173/182 (95%), Positives = 175/182 (96%), Frame = -1
Query: 20 RPLAGGEPVSLGSLRGKVLLIENVASL*GTTVRDYTQMNELQRRLGPRGLVVLGFPCNQF 79
R LA GEPVSLGSLR KVLLIENVASL*GTTVRDYTQMNELQR LGPRGLVVLGFPCNQF
Sbjct: 815 RLLAVGEPVSLGSLRVKVLLIENVASL*GTTVRDYTQMNELQRHLGPRGLVVLGFPCNQF 636
Query: 80 GHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDAT 139
GHQENAKNEEILNSLKYVRPGGGF+PNFMLFEK EVNGAGAH LFAFLREALPAPSDDAT
Sbjct: 635 GHQENAKNEEILNSLKYVRPGGGFQPNFMLFEKGEVNGAGAHTLFAFLREALPAPSDDAT 456
Query: 140 ALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEALLSQGPS 199
ALMTDPKLITWS VCRNDVAWNFEKFLVGPDGVPLRRYSRRF+TIDIEPDIEALLSQGPS
Sbjct: 455 ALMTDPKLITWSLVCRNDVAWNFEKFLVGPDGVPLRRYSRRFETIDIEPDIEALLSQGPS 276
Query: 200 CA 201
CA
Sbjct: 275 CA 270
>AADA01010844 dna:contig chromosome:CHIMP1A:21:27408845:27438715:-1
Length = 29,871
Plus Strand HSPs:
Score = 416 (205.3 bits), Expect = 8.0e-124, Sum P(4) = 8.0e-124
Identities = 66/70 (94%), Positives = 66/70 (94%), Frame = +2
Query: 132 PAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIE 191
PAPSDDAT LMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVP RYSRRFQTIDIEPDIE
Sbjct: 3842 PAPSDDATELMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPVCRYSRRFQTIDIEPDIE 4021
Query: 192 ALLSQGPSCA 201
ALLSQGP CA
Sbjct: 4022 ALLSQGPRCA 4051
Score = 368 (181.9 bits), Expect = 8.0e-124, Sum P(4) = 8.0e-124
Identities = 60/70 (85%), Positives = 62/70 (88%), Frame = +3
Query: 66 PRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFA 125
PRGLVVLGFPCNQFGHQENAKNEEIL SLKYV+PGGGFEP FML EKCEVN AGAHPL A
Sbjct: 3645 PRGLVVLGFPCNQFGHQENAKNEEILKSLKYVQPGGGFEPSFMLLEKCEVNSAGAHPLSA 3824
Query: 126 FLREALPAPS 135
FLREA P+
Sbjct: 3825 FLREAGQPPA 3854
Score = 204 (101.9 bits), Expect = 8.0e-124, Sum P(4) = 8.0e-124
Identities = 36/38 (94%), Positives = 37/38 (97%), Frame = +1
Query: 29 SLGSLRGKVLLIENVASL*GTTVRDYTQMNELQRRLGP 66
+LGSLRGK LLIENVASL*GTTVRDYTQMNELQRRLGP
Sbjct: 3535 ALGSLRGKGLLIENVASL*GTTVRDYTQMNELQRRLGP 3648
Score = 42 (22.8 bits), Expect = 8.0e-124, Sum P(4) = 8.0e-124
Identities = 7/8 (87%), Positives = 7/8 (87%), Frame = +2
Query: 21 PLAGGEPV 28
PLA GEPV
Sbjct: 3512 PLASGEPV 3535
>AADA01084509 dna:contig chromosome:CHIMP1A:14:64069426:64090994:-1
Length = 21,569
Plus Strand HSPs:
Score = 489 (240.9 bits), Expect = 3.9e-93, Sum P(2) = 3.9e-93
Identities = 79/112 (70%), Positives = 90/112 (80%), Frame = +1
Query: 83 ENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALM 142
EN +NEEILNSLKYVRPGGG++P F L +KCEVNG HP FA+L++ LP P DD +LM
Sbjct: 11659 ENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPKFAYLKDKLPYPYDDPFSLM 11838
Query: 143 TDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEALL 194
TDPKLI WSPV R DVAWNFEKFL+GP+G P RRYSR F TI+IEPDI LL
Sbjct: 11839 TDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKRLL 11994
Score = 239 (119.0 bits), Expect = 3.9e-93, Sum P(2) = 3.9e-93
Identities = 42/58 (72%), Positives = 46/58 (79%), Frame = +1
Query: 25 GEPVSLGSLRGKVLLIENVASL*GTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQ 82
GE V + RG+ LIENVASL*GTT RD+TQ+NELQ R PR LVVLGFPCNQFGHQ
Sbjct: 8818 GEKVDFNTFRGRAVLIENVASL*GTTTRDFTQLNELQCRF-PRRLVVLGFPCNQFGHQ 8988
>AADA01270126 dna:contig chromosome:CHIMP1A:5:157302916:157344864:1
Length = 41,949
Plus Strand HSPs:
Score = 150 (75.5 bits), Expect = 7.3e-35, Sum P(3) = 7.3e-35
Identities = 25/40 (62%), Positives = 29/40 (72%), Frame = +3
Query: 56 QMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLK 95
++N LQ L P GLV+LGFPCNQFG QE N EIL +LK
Sbjct: 35649 ELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTLK 35768
Score = 127 (64.3 bits), Expect = 7.3e-35, Sum P(3) = 7.3e-35
Identities = 20/41 (48%), Positives = 26/41 (63%), Frame = +2
Query: 150 WSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDI 190
W P D+ WNFEKFLVGPDG+P+ R+ R ++ DI
Sbjct: 36716 WEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDI 36838
Score = 127 (64.3 bits), Expect = 7.3e-35, Sum P(3) = 7.3e-35
Identities = 24/43 (55%), Positives = 30/43 (69%), Frame = +3
Query: 91 LNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREA-LP 132
LN +YVRPGGGF PNF LFEK +VNG + + FL+ + LP
Sbjct: 36174 LN--RYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKVSELP 36296
Score = 52 (27.7 bits), Expect = 4.0e-12, Sum P(2) = 4.0e-12
Identities = 9/18 (50%), Positives = 13/18 (72%), Frame = +2
Query: 128 REALPAPSDDATALMTDP 145
R+A PAPS+D + +T P
Sbjct: 37643 RDATPAPSEDVPSPLTGP 37696
Score = 38 (20.9 bits), Expect = 9.1e-07, Sum P(2) = 9.1e-07
Identities = 7/14 (50%), Positives = 9/14 (64%), Frame = +2
Query: 87 NEEILNSLKYVRPG 100
N EI +L Y+ PG
Sbjct: 25004 NREIAPALCYISPG 25045
Score = 36 (19.9 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 6/9 (66%), Positives = 8/9 (88%), Frame = +1
Query: 123 LFAFLREAL 131
LF FLR++L
Sbjct: 5212 LFLFLRQSL 5238
>AADA01258500 dna:contig chromosome:CHIMP1A:6:29055823:29086017:1
Length = 30,195
Plus Strand HSPs:
Score = 131 (66.3 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 23/32 (71%), Positives = 24/32 (75%), Frame = +1
Query: 64 LGPRGLVVLGFPCNQFGHQENAKNEEILNSLK 95
L P GLVVLGFPCNQFG QE N EIL +LK
Sbjct: 29473 LKPYGLVVLGFPCNQFGKQEPGDNKEILPALK 29568
Score = 123 (62.4 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 21/39 (53%), Positives = 27/39 (69%), Frame = +3
Query: 90 ILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLR 128
I+ +YVRPGGGF P F LFEK +VNG + F+FL+
Sbjct: 29976 IMACCRYVRPGGGFVPSFQLFEKGDVNGEKEQKVFSFLK 30092
Minus Strand HSPs:
Score = 128 (64.8 bits), Expect = 1.9e-28, Sum P(3) = 1.9e-28
Identities = 23/41 (56%), Positives = 26/41 (63%), Frame = -3
Query: 55 TQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLK 95
T++N LQ L G +VL FPCNQFG QE N EIL LK
Sbjct: 4036 TELNALQEELKNFGVIVLAFPCNQFGKQEPGTNSEILLGLK 3914
Score = 126 (63.8 bits), Expect = 1.9e-28, Sum P(3) = 1.9e-28
Identities = 27/72 (37%), Positives = 36/72 (50%), Frame = -2
Query: 125 AFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTI 184
+ L+ + P SD L+ + W P D+ WNFEKFLVGPDGVP R+ +
Sbjct: 2105 SLLQNSCPPTSD----LLGSSSQLFWEPMKVHDICWNFEKFLVGPDGVPVMRWFHQAPVS 1938
Query: 185 DIEPDIEALLSQ 196
+ DI L Q
Sbjct: 1937 TVKSDILEYLKQ 1902
Score = 104 (53.1 bits), Expect = 1.9e-28, Sum P(3) = 1.9e-28
Identities = 21/40 (52%), Positives = 24/40 (60%), Frame = -1
Query: 95 KYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFL--REALP 132
+YV PG GF P F LFEK +VNG + F FL RE P
Sbjct: 3405 RYVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLKVREYKP 3286
Score = 37 (20.4 bits), Expect = 9.6e-16, Sum P(3) = 9.6e-16
Identities = 6/8 (75%), Positives = 6/8 (75%), Frame = -3
Query: 149 TWSPVCRN 156
T SP CRN
Sbjct: 1858 TLSPTCRN 1835
>AADA01025839 dna:contig chromosome:CHIMP1A:1:50996614:51012845:1
Length = 16,232
Plus Strand HSPs:
Score = 184 (92.1 bits), Expect = 2.1e-16, P = 2.1e-16
Identities = 42/92 (45%), Positives = 52/92 (56%), Frame = +3
Query: 36 KVLLIENVASL*GTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLK 95
+V L+ NVAS G T + Y + +LQR LGP VL FPCNQFG+QE N EI S
Sbjct: 14745 QVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEI-ES-- 14915
Query: 96 YVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFL 127
+ R + F +F K V G GAHP F +L
Sbjct: 14916 FARRT--YSVSFPMFSKIAVTGTGAHPAFKYL 15005
>AADA01228737 dna:contig chromosome:CHIMP1A:6:29087215:29098836:1
Length = 11,622
Plus Strand HSPs:
Score = 156 (78.5 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 27/51 (52%), Positives = 32/51 (62%), Frame = +1
Query: 146 KLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEALLSQ 196
K I+W PV D+ WNFEKFLVGPDG+P R+S R + DI A L Q
Sbjct: 280 KSISWDPVKVHDIRWNFEKFLVGPDGIPVMRWSHRATVSSVKTDILAYLKQ 432
>AADA01197782 dna:contig chromosome:CHIMP1A:20_random:285439:290276:1
Length = 4838
Minus Strand HSPs:
Score = 134 (67.7 bits), Expect = 5.5e-09, P = 5.5e-09
Identities = 26/49 (53%), Positives = 33/49 (67%), Frame = -3
Query: 34 RGKVLLIENVASL*GTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQ 82
RG V ++ NVAS *G T +YTQ+ +L+ R GL +L FPCNQFG Q
Sbjct: 2127 RGFVCIVTNVASQ*GKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQ 1981
>AADA01264960 dna:contig chromosome:CHIMP1A:5:61722612:61728843:1
Length = 6232
Minus Strand HSPs:
Score = 131 (66.3 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 35/91 (38%), Positives = 45/91 (49%), Frame = -3
Query: 37 VLLIENVASL*GTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKY 96
V L+ NVAS T R+Y + EL++ GP VL FPCNQFG E E+ S +
Sbjct: 1820 VSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEV-ES--F 1650
Query: 97 VRPGGGFEPNFMLFEKCEVNGAGAHPLFAFL 127
R G F +F K + G+ P F FL
Sbjct: 1649 ARKNYGV--TFPIFHKIKILGSEGEPAFRFL 1563
Parameters:
matrix=BLOSUM90
T=16
filter=seg
B=100
E=0.1
W=4
hitdist=40
ctxfactor=6.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM90 0.338 0.197 0.814 same same same
Q=9,R=2 0.338 0.197 0.814 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 201 184 0.10 80 4 16 21 0.069 35
28 0.069 35
Statistics:
Database: /data/blastdb/ensembl/Pan_troglodytes.CHIMP1A.nov.dna.contig.fa
Title: Pan_troglodytes.CHIMP1A.nov.dna.contig.fa
Posted: 4:41:53 PM GMT Nov 1, 2005
Created: 12:51:32 PM GMT Nov 1, 2005
Format: XDF-1
# of letters in database: 2,733,946,937
# of sequences in database: 361,863
# of database sequences satisfying E: 10
No. of states in DFA: 8143 (859 KB)
Total size of DFA: 1286 KB (2261 KB)
Time to generate neighborhood: 0.00u 0.01s 0.01t Elapsed: 00:00:00
No. of threads or processors used: 2
Search cpu time: 225.07u 10.95s 236.02t Elapsed: 00:03:25
Total cpu time: 225.07u 10.96s 236.03t Elapsed: 00:03:25
Start: Tue Mar 7 17:04:59 2006 End: Tue Mar 7 17:08:24 2006
WARNINGS ISSUED: 1
d\f1
############################################################################################################################################
d\tx0\tx959\tx1918\tx2877\tx3836\tx4795\tx5754\tx6713\tx7672\tx8631\f0 TBLASTN 2.0MP-WashU [16-Jul-2004] [linux24-i786-ILP32F64 2004-07-16T10:57:18]
Copyright (C) 1996-2004 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2004) http://blast.wustl.edu
Query= GPx2
(190 letters)
WARNING: No precomputed values for Lambda, K and H are available for the
BLOSUM90 scoring matrix, regardless of the chosen gap penalties.
Unless overridden on the command line, computed values for ungapped
alignments will be used, but the E-values and P-values reported may
be much too low.
Database: Pan_troglodytes.CHIMP1A.nov.dna.contig.fa
361,863 sequences; 2,733,946,937 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
Reading High Probability
Sequences producing High-scoring Segment Pairs: Frame Score P(N) N
AADA01084509 dna:contig chromosome:CHIMP1A:14:64069426... +1 734 1.4e-159 2
AADA01275713 dna:contig chromosome:CHIMP1A:2_random:38... +3 492 4.5e-96 2
AADA01212312 dna:contig chromosome:CHIMP1A:X:13576745:... -1 694 2.8e-93 1
AADA01010844 dna:contig chromosome:CHIMP1A:21:27408845... +3 288 1.4e-76 3
AADA01270126 dna:contig chromosome:CHIMP1A:5:157302916... +3 123 7.0e-27 3
AADA01258500 dna:contig chromosome:CHIMP1A:6:29055823:... -2 121 3.8e-24 3
AADA01025839 dna:contig chromosome:CHIMP1A:1:50996614:... +3 144 2.1e-10 1
AADA01197782 dna:contig chromosome:CHIMP1A:20_random:2... -3 126 2.5e-10 2
AADA01228737 dna:contig chromosome:CHIMP1A:6:29087215:... +1 125 1.3e-07 1
AADA01264960 dna:contig chromosome:CHIMP1A:5:61722612:... -3 119 1.0e-06 1
>AADA01084509 dna:contig chromosome:CHIMP1A:14:64069426:64090994:-1
Length = 21,569
Plus Strand HSPs:
Score = 734 (360.1 bits), Expect = 1.4e-159, Sum P(2) = 1.4e-159
Identities = 115/116 (99%), Positives = 115/116 (99%), Frame = +1
Query: 75 ENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPYDDPFSLM 134
ENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHP FAYLKDKLPYPYDDPFSLM
Sbjct: 11659 ENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPKFAYLKDKLPYPYDDPFSLM 11838
Query: 135 TDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKRLLKVAI 190
TDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKRLLKVAI
Sbjct: 11839 TDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKRLLKVAI 12006
Score = 449 (221.2 bits), Expect = 1.4e-159, Sum P(2) = 1.4e-159
Identities = 74/74 (100%), Positives = 74/74 (100%), Frame = +1
Query: 1 MAFIAKSFYDLSAISLDGEKVDFNTFRGRAVLIENVASL*GTTTRDFTQLNELQCRFPRR 60
MAFIAKSFYDLSAISLDGEKVDFNTFRGRAVLIENVASL*GTTTRDFTQLNELQCRFPRR
Sbjct: 8767 MAFIAKSFYDLSAISLDGEKVDFNTFRGRAVLIENVASL*GTTTRDFTQLNELQCRFPRR 8946
Query: 61 LVVLGFPCNQFGHQ 74
LVVLGFPCNQFGHQ
Sbjct: 8947 LVVLGFPCNQFGHQ 8988
Score = 36 (19.9 bits), Expect = 3.6e-99, Sum P(2) = 3.6e-99
Identities = 7/16 (43%), Positives = 7/16 (43%), Frame = +1
Query: 55 CRFPRRLVVLGFPCNQ 70
C FP V PC Q
Sbjct: 625 CVFPGNELVPSLPCEQ 672
>AADA01275713 dna:contig chromosome:CHIMP1A:2_random:38844896:38848789:1
Length = 3894
Plus Strand HSPs:
Score = 492 (242.2 bits), Expect = 4.5e-96, Sum P(2) = 4.5e-96
Identities = 79/112 (70%), Positives = 90/112 (80%), Frame = +3
Query: 75 ENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPYDDPFSLM 134
EN +NEEILNSLKYVRPGGG++P F L +KCEVNG HP FA+L++ LP P DD +LM
Sbjct: 972 ENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALM 1151
Query: 135 TDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKRLL 186
TDPKLI WSPV R DVAWNFEKFL+GP+G P RRYSR F TI+IEPDI LL
Sbjct: 1152 TDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEALL 1307
Score = 251 (124.7 bits), Expect = 4.5e-96, Sum P(2) = 4.5e-96
Identities = 48/72 (66%), Positives = 53/72 (73%), Frame = +2
Query: 5 AKSFYDLSAISL-DGEKVDFNTFRGRAVLIENVASL*GTTTRDFTQLNELQCRF-PRRLV 62
A+S Y SA L GE V + RG+ LIENVASL*GTT RD+TQ+NELQ R PR LV
Sbjct: 482 AQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASL*GTTVRDYTQMNELQRRLGPRGLV 661
Query: 63 VLGFPCNQFGHQ 74
VLGFPCNQFGHQ
Sbjct: 662 VLGFPCNQFGHQ 697
>AADA01212312 dna:contig chromosome:CHIMP1A:X:13576745:13585092:1
Length = 8348
Minus Strand HSPs:
Score = 694 (340.6 bits), Expect = 2.8e-93, P = 2.8e-93
Identities = 123/184 (66%), Positives = 138/184 (75%), Frame = -1
Query: 5 AKSFYDLSAISLD-GEKVDFNTFRGRAVLIENVASL*GTTTRDFTQLNELQCRF-PRRLV 62
A+S Y SA L GE V + R + LIENVASL*GTT RD+TQ+NELQ PR LV
Sbjct: 842 AQSVYAFSARLLAVGEPVSLGSLRVKVLLIENVASL*GTTVRDYTQMNELQRHLGPRGLV 663
Query: 63 VLGFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDK 122
VLGFPCNQFGHQEN +NEEILNSLKYVRPGGG+QP F L +K EVNG H FA+L++
Sbjct: 662 VLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFQPNFMLFEKGEVNGAGAHTLFAFLREA 483
Query: 123 LPYPYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDI 182
LP P DD +LMTDPKLI WS V R DVAWNFEKFL+GP+G P RRYSR F TI+IEPDI
Sbjct: 482 LPAPSDDATALMTDPKLITWSLVCRNDVAWNFEKFLVGPDGVPLRRYSRRFETIDIEPDI 303
Query: 183 KRLL 186
LL
Sbjct: 302 EALL 291
>AADA01010844 dna:contig chromosome:CHIMP1A:21:27408845:27438715:-1
Length = 29,871
Plus Strand HSPs:
Score = 288 (142.7 bits), Expect = 1.4e-76, Sum P(3) = 1.4e-76
Identities = 47/75 (62%), Positives = 56/75 (74%), Frame = +3
Query: 58 PRRLVVLGFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFA 117
PR LVVLGFPCNQFGHQEN +NEEIL SLKYV+PGGG++P+F L +KCEVN HP A
Sbjct: 3645 PRGLVVLGFPCNQFGHQENAKNEEILKSLKYVQPGGGFEPSFMLLEKCEVNSAGAHPLSA 3824
Query: 118 YLKDKLPYPYDDPFS 132
+L++ P P S
Sbjct: 3825 FLREAGQPPATTPLS 3869
Score = 264 (131.0 bits), Expect = 1.4e-76, Sum P(3) = 1.4e-76
Identities = 45/63 (71%), Positives = 48/63 (76%), Frame = +2
Query: 124 PYPYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIK 183
P P DD LMTDPKLI WSPV R DVAWNFEKFL+GP+G P RYSR F TI+IEPDI
Sbjct: 3842 PAPSDDATELMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPVCRYSRRFQTIDIEPDIE 4021
Query: 184 RLL 186
LL
Sbjct: 4022 ALL 4030
Score = 134 (67.7 bits), Expect = 1.4e-76, Sum P(3) = 1.4e-76
Identities = 25/37 (67%), Positives = 29/37 (78%), Frame = +1
Query: 25 TFRGRAVLIENVASL*GTTTRDFTQLNELQCRFPRRL 61
+ RG+ LIENVASL*GTT RD+TQ+NELQ RRL
Sbjct: 3544 SLRGKGLLIENVASL*GTTVRDYTQMNELQ----RRL 3642
>AADA01270126 dna:contig chromosome:CHIMP1A:5:157302916:157344864:1
Length = 41,949
Plus Strand HSPs:
Score = 123 (62.3 bits), Expect = 7.0e-27, Sum P(3) = 7.0e-27
Identities = 24/40 (60%), Positives = 28/40 (70%), Frame = +3
Query: 49 QLNELQCRF-PRRLVVLGFPCNQFGHQENCQNEEILNSLK 87
+LN LQ P LV+LGFPCNQFG QE +N EIL +LK
Sbjct: 35649 ELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTLK 35768
Score = 114 (57.9 bits), Expect = 7.0e-27, Sum P(3) = 7.0e-27
Identities = 21/43 (48%), Positives = 28/43 (65%), Frame = +2
Query: 142 WSPVRRSDVAWNFEKFLIGPEGEPFRRYS-RTFPTI-NIEPDI 182
W P + D+ WNFEKFL+GP+G P R+ RT T+ N+ DI
Sbjct: 36716 WEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRT--TVSNVKMDI 36838
Score = 113 (57.4 bits), Expect = 7.0e-27, Sum P(3) = 7.0e-27
Identities = 21/43 (48%), Positives = 29/43 (67%), Frame = +3
Query: 83 LNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLK-DKLP 124
LN +YVRPGGG+ P F L +K +VNG+ E+ + +LK LP
Sbjct: 36174 LN--RYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKVSELP 36296
Score = 41 (22.3 bits), Expect = 9.9e-05, Sum P(3) = 9.9e-05
Identities = 7/19 (36%), Positives = 11/19 (57%), Frame = +2
Query: 108 NGQNEHPVFAYLKDKLPYP 126
+G+ HP F+ +PYP
Sbjct: 28793 DGEERHPTFSVPTVPMPYP 28849
Score = 38 (20.9 bits), Expect = 9.3e-15, Sum P(3) = 9.3e-15
Identities = 6/10 (60%), Positives = 7/10 (70%), Frame = +2
Query: 72 GHQENCQNEE 81
GH E C+N E
Sbjct: 11489 GHYEACRNKE 11518
Score = 38 (20.9 bits), Expect = 9.9e-05, Sum P(3) = 9.9e-05
Identities = 7/14 (50%), Positives = 9/14 (64%), Frame = +2
Query: 79 NEEILNSLKYVRPG 92
N EI +L Y+ PG
Sbjct: 25004 NREIAPALCYISPG 25045
>AADA01258500 dna:contig chromosome:CHIMP1A:6:29055823:29086017:1
Length = 30,195
Plus Strand HSPs:
Score = 123 (62.3 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 20/39 (51%), Positives = 30/39 (76%), Frame = +3
Query: 82 ILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLK 120
I+ +YVRPGGG+ P+F L +K +VNG+ E+ VF++LK
Sbjct: 29976 IMACCRYVRPGGGFVPSFQLFEKGDVNGEKEQKVFSFLK 30092
Score = 115 (58.4 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 21/30 (70%), Positives = 22/30 (73%), Frame = +1
Query: 58 PRRLVVLGFPCNQFGHQENCQNEEILNSLK 87
P LVVLGFPCNQFG QE N EIL +LK
Sbjct: 29479 PYGLVVLGFPCNQFGKQEPGDNKEILPALK 29568
Minus Strand HSPs:
Score = 121 (61.3 bits), Expect = 3.8e-24, Sum P(3) = 3.8e-24
Identities = 20/46 (43%), Positives = 26/46 (56%), Frame = -2
Query: 142 WSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKRLLK 187
W P + D+ WNFEKFL+GP+G P R+ P + DI LK
Sbjct: 2042 WEPMKVHDICWNFEKFLVGPDGVPVMRWFHQAPVSTVKSDILEYLK 1905
Score = 105 (53.5 bits), Expect = 3.8e-24, Sum P(3) = 3.8e-24
Identities = 22/41 (53%), Positives = 24/41 (58%), Frame = -3
Query: 48 TQLNELQCRFPR-RLVVLGFPCNQFGHQENCQNEEILNSLK 87
T+LN LQ +VL FPCNQFG QE N EIL LK
Sbjct: 4036 TELNALQEELKNFGVIVLAFPCNQFGKQEPGTNSEILLGLK 3914
Score = 103 (52.5 bits), Expect = 3.8e-24, Sum P(3) = 3.8e-24
Identities = 17/34 (50%), Positives = 25/34 (73%), Frame = -1
Query: 87 KYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLK 120
+YV PG G+ P+F L +K +VNG+ E+ VF +LK
Sbjct: 3405 RYVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLK 3304
Score = 41 (22.3 bits), Expect = 4.8e-15, Sum P(3) = 4.8e-15
Identities = 7/14 (50%), Positives = 10/14 (71%), Frame = -1
Query: 48 TQLNELQCRFPRRL 61
T LN L+ + PRR+
Sbjct: 22221 TTLNSLEAQSPRRI 22180
Score = 36 (19.9 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 6/19 (31%), Positives = 12/19 (63%), Frame = -1
Query: 81 EILNSLKYVRPGGGYQPTF 99
++LNS+ ++ +QP F
Sbjct: 13836 QVLNSMVFIAS*SKFQPFF 13780
>AADA01025839 dna:contig chromosome:CHIMP1A:1:50996614:51012845:1
Length = 16,232
Plus Strand HSPs:
Score = 144 (72.5 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 38/92 (41%), Positives = 46/92 (50%), Frame = +3
Query: 32 LIENVASL*GTTTRDFTQLNELQCRF-PRRLVVLGFPCNQFGHQENCQNEEILNSLKYVR 90
L+ NVAS G T + + L +LQ P VL FPCNQFG+QE N EI S + R
Sbjct: 14754 LVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEI-ES--FAR 14924
Query: 91 PGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDK 122
Y +F + K V G HP F YL K
Sbjct: 14925 RT--YSVSFPMFSKIAVTGTGAHPAFKYLARK 15014
>AADA01197782 dna:contig chromosome:CHIMP1A:20_random:285439:290276:1
Length = 4838
Minus Strand HSPs:
Score = 126 (63.8 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 25/52 (48%), Positives = 33/52 (63%), Frame = -3
Query: 27 RGRAVLIENVASL*GTTTRDFTQLNELQCRFPR-RLVVLGFPCNQFGHQENC 77
RG ++ NVAS *G T ++TQL +L+ R+ L +L FPCNQFG Q C
Sbjct: 2127 RGFVCIVTNVASQ*GKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQVGC 1972
Score = 58 (30.6 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 17/47 (36%), Positives = 21/47 (44%), Frame = -2
Query: 74 QENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLK 120
QE NEEI K GY F + K VNG + HP ++K
Sbjct: 1804 QEPGSNEEI----K--EFAAGYNVKFDMFSKICVNGDDAHPLWKWMK 1682
>AADA01228737 dna:contig chromosome:CHIMP1A:6:29087215:29098836:1
Length = 11,622
Plus Strand HSPs:
Score = 125 (63.3 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 23/50 (46%), Positives = 29/50 (58%), Frame = +1
Query: 138 KLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKRLLK 187
K I W PV+ D+ WNFEKFL+GP+G P R+S + DI LK
Sbjct: 280 KSISWDPVKVHDIRWNFEKFLVGPDGIPVMRWSHRATVSSVKTDILAYLK 429
>AADA01264960 dna:contig chromosome:CHIMP1A:5:61722612:61728843:1
Length = 6232
Minus Strand HSPs:
Score = 119 (60.3 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 38/99 (38%), Positives = 48/99 (48%), Frame = -3
Query: 29 RAV-LIENVASL*GTTTRDFTQLNELQCRF-PRRLVVLGFPCNQFGHQENCQNEEILNSL 86
R V L+ NVAS T R++ L EL+ F P VL FPCNQFG E E+ S
Sbjct: 1826 REVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEV-ES- 1653
Query: 87 KYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDK-LP 124
+ R Y TF + +K + G P F +L K LP
Sbjct: 1652 -FARKN--YGVTFPIFHKIKILGSEGEPAFRFLVGKYLP 1545
Parameters:
matrix=BLOSUM90
T=16
filter=seg
B=100
E=0.1
W=4
hitdist=40
ctxfactor=6.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM90 0.338 0.197 0.818 same same same
Q=9,R=2 0.338 0.197 0.818 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 190 190 0.10 81 4 16 21 0.072 35
28 0.072 35
Statistics:
Database: /data/blastdb/ensembl/Pan_troglodytes.CHIMP1A.nov.dna.contig.fa
Title: Pan_troglodytes.CHIMP1A.nov.dna.contig.fa
Posted: 4:41:53 PM GMT Nov 1, 2005
Created: 12:51:32 PM GMT Nov 1, 2005
Format: XDF-1
# of letters in database: 2,733,946,937
# of sequences in database: 361,863
# of database sequences satisfying E: 10
No. of states in DFA: 9074 (958 KB)
Total size of DFA: 1475 KB (2305 KB)
Time to generate neighborhood: 0.01u 0.00s 0.01t Elapsed: 00:00:00
No. of threads or processors used: 2
Search cpu time: 259.62u 2.20s 261.82t Elapsed: 00:02:40
Total cpu time: 259.63u 2.20s 261.83t Elapsed: 00:02:41
Start: Tue Mar 7 17:18:17 2006 End: Tue Mar 7 17:20:58 2006
WARNINGS ISSUED: 1
d\f1
############################################################################################################################################
d\tx0\tx959\tx1918\tx2877\tx3836\tx4795\tx5754\tx6713\tx7672\tx8631\f0 TBLASTN 2.0MP-WashU [16-Jul-2004] [linux24-i786-ILP32F64 2004-07-16T10:57:18]
Copyright (C) 1996-2004 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2004) http://blast.wustl.edu
Query= GPx3
(226 letters)
WARNING: No precomputed values for Lambda, K and H are available for the
BLOSUM90 scoring matrix, regardless of the chosen gap penalties.
Unless overridden on the command line, computed values for ungapped
alignments will be used, but the E-values and P-values reported may
be much too low.
Database: Pan_troglodytes.CHIMP1A.nov.dna.contig.fa
361,863 sequences; 2,733,946,937 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
Reading High Probability
Sequences producing High-scoring Segment Pairs: Frame Score P(N) N
AADA01270126 dna:contig chromosome:CHIMP1A:5:157302916... +2 467 2.1e-160 5
AADA01258500 dna:contig chromosome:CHIMP1A:6:29055823:... -2 320 7.3e-104 4
AADA01212312 dna:contig chromosome:CHIMP1A:X:13576745:... -1 421 7.8e-52 1
AADA01275713 dna:contig chromosome:CHIMP1A:2_random:38... +3 277 8.8e-48 2
AADA01084509 dna:contig chromosome:CHIMP1A:14:64069426... +1 241 2.6e-41 2
AADA01228737 dna:contig chromosome:CHIMP1A:6:29087215:... +1 286 1.5e-31 1
AADA01010844 dna:contig chromosome:CHIMP1A:21:27408845... +3 220 1.0e-21 1
AADA01025839 dna:contig chromosome:CHIMP1A:1:50996614:... +3 146 1.0e-10 1
AADA01197782 dna:contig chromosome:CHIMP1A:20_random:2... -3 109 2.2e-07 2
AADA01264960 dna:contig chromosome:CHIMP1A:5:61722612:... -3 115 4.0e-06 1
>AADA01270126 dna:contig chromosome:CHIMP1A:5:157302916:157344864:1
Length = 41,949
Plus Strand HSPs:
Score = 467 (230.8 bits), Expect = 2.1e-160, Sum P(5) = 2.1e-160
Identities = 73/73 (100%), Positives = 73/73 (100%), Frame = +2
Query: 154 NSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDILS 213
NSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDILS
Sbjct: 36665 NSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDILS 36844
Query: 214 YMRRQAALGVKRK 226
YMRRQAALGVKRK
Sbjct: 36845 YMRRQAALGVKRK 36883
Score = 315 (156.4 bits), Expect = 2.1e-160, Sum P(5) = 2.1e-160
Identities = 51/52 (98%), Positives = 52/52 (100%), Frame = +3
Query: 29 KMDCHGGISGTIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASY*GLTGQYI 80
+MDCHGGISGTIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASY*GLTGQYI
Sbjct: 34086 QMDCHGGISGTIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASY*GLTGQYI 34241
Score = 247 (123.2 bits), Expect = 2.1e-160, Sum P(5) = 2.1e-160
Identities = 40/40 (100%), Positives = 40/40 (100%), Frame = +3
Query: 81 ELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTLK 120
ELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTLK
Sbjct: 35649 ELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTLK 35768
Score = 219 (109.5 bits), Expect = 2.1e-160, Sum P(5) = 2.1e-160
Identities = 36/40 (90%), Positives = 37/40 (92%), Frame = +3
Query: 120 KYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNS-CPP 158
+YVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLK S PP
Sbjct: 36180 RYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKVSELPP 36299
Score = 77 (40.0 bits), Expect = 2.1e-160, Sum P(5) = 2.1e-160
Identities = 13/13 (100%), Positives = 13/13 (100%), Frame = +3
Query: 17 GFVSQSRGQEKSK 29
GFVSQSRGQEKSK
Sbjct: 29466 GFVSQSRGQEKSK 29504
Score = 48 (25.8 bits), Expect = 1.7e-59, Sum P(3) = 1.7e-59
Identities = 8/14 (57%), Positives = 9/14 (64%), Frame = +2
Query: 112 NSEILPTLKYVRPG 125
N EI P L Y+ PG
Sbjct: 25004 NREIAPALCYISPG 25045
Score = 41 (22.4 bits), Expect = 1.7e-59, Sum P(3) = 1.7e-59
Identities = 8/17 (47%), Positives = 8/17 (47%), Frame = +2
Query: 138 GDVNGEKEQKFYTFLKN 154
G EKE F TF N
Sbjct: 27122 GQLRSEKESNFITFRSN 27172
Score = 37 (20.4 bits), Expect = 8.0e-130, Sum P(5) = 8.0e-130
Identities = 7/10 (70%), Positives = 8/10 (80%), Frame = +2
Query: 105 GK-QEPGENS 113
GK Q PGEN+
Sbjct: 34937 GKRQHPGENA 34966
Score = 37 (20.4 bits), Expect = 4.0e-39, Sum P(3) = 4.0e-39
Identities = 8/17 (47%), Positives = 10/17 (58%), Frame = +2
Query: 110 GENSEILPTLKYVRPGG 126
G S + PTL+ PGG
Sbjct: 39128 GRGSWLHPTLRIAAPGG 39178
>AADA01258500 dna:contig chromosome:CHIMP1A:6:29055823:29086017:1
Length = 30,195
Plus Strand HSPs:
Score = 202 (101.2 bits), Expect = 2.8e-39, Sum P(2) = 2.8e-39
Identities = 38/54 (70%), Positives = 41/54 (75%), Frame = +1
Query: 81 ELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTLKYVR---P-GGGFVP 130
ELNA EEL P+GLV+LGFPCNQFGKQEPG+N EILP LK V P GG VP
Sbjct: 29449 ELNAP*EELKPYGLVVLGFPCNQFGKQEPGDNKEILPALK*VSS*NPIGGACVP 29610
Score = 191 (95.8 bits), Expect = 1.2e-37, Sum P(2) = 1.2e-37
Identities = 34/47 (72%), Positives = 38/47 (80%), Frame = +3
Query: 109 PGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNS 155
PG N I+ +YVRPGGGFVP FQLFEKGDVNGEKEQK ++FLK S
Sbjct: 29967 PG-N--IMACCRYVRPGGGFVPSFQLFEKGDVNGEKEQKVFSFLKVS 30098
Score = 186 (93.3 bits), Expect = 2.8e-39, Sum P(2) = 2.8e-39
Identities = 30/51 (58%), Positives = 39/51 (76%), Frame = +3
Query: 29 KMDCHGGISGTIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASY*GLTGQY 79
+MDCH GTIY+Y A+ ++ EY+ FKQY GK++LFVNVA+Y GLT QY
Sbjct: 27012 QMDCHKDEKGTIYDYEAIALNKNEYVSFKQYVGKHILFVNVATYCGLTAQY 27164
Minus Strand HSPs:
Score = 320 (158.9 bits), Expect = 7.3e-104, Sum P(4) = 7.3e-104
Identities = 48/68 (70%), Positives = 59/68 (86%), Frame = -2
Query: 150 TFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKM 209
+ L+NSCPPTS+LLG+S +LFWEPMKVHDI WNFEKFLVGPDG+P+MRW H+ VS VK
Sbjct: 2105 SLLQNSCPPTSDLLGSSSQLFWEPMKVHDICWNFEKFLVGPDGVPVMRWFHQAPVSTVKS 1926
Query: 210 DILSYMRR 217
DIL Y+++
Sbjct: 1925 DILEYLKQ 1902
Score = 233 (116.3 bits), Expect = 7.3e-104, Sum P(4) = 7.3e-104
Identities = 37/51 (72%), Positives = 45/51 (88%), Frame = -3
Query: 29 KMDCHGGISGTIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASY*GLTGQY 79
+ DC G++GTIYEYGALT++GEEYI FKQ+AGK+VLFVNVA+Y*GL QY
Sbjct: 8485 QVDCNKGVTGTIYEYGALTLNGEEYIQFKQFAGKHVLFVNVATY*GLAAQY 8333
Score = 187 (93.8 bits), Expect = 7.3e-104, Sum P(4) = 7.3e-104
Identities = 31/40 (77%), Positives = 33/40 (82%), Frame = -3
Query: 81 ELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTLK 120
ELNALQEEL FG ++L FPCNQFGKQEPG NSEIL LK
Sbjct: 4033 ELNALQEELKNFGVIVLAFPCNQFGKQEPGTNSEILLGLK 3914
Score = 174 (87.5 bits), Expect = 7.3e-104, Sum P(4) = 7.3e-104
Identities = 28/34 (82%), Positives = 30/34 (88%), Frame = -1
Query: 120 KYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLK 153
+YV PG GFVP FQLFEKGDVNGEKEQK +TFLK
Sbjct: 3405 RYVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLK 3304
Score = 39 (21.4 bits), Expect = 1.6e-54, Sum P(3) = 1.6e-54
Identities = 10/18 (55%), Positives = 10/18 (55%), Frame = -1
Query: 97 LGFPCNQFGKQEPGE-NS 113
LG P Q KQ P E NS
Sbjct: 29385 LGLPILQRRKQRPREGNS 29332
>AADA01212312 dna:contig chromosome:CHIMP1A:X:13576745:13585092:1
Length = 8348
Minus Strand HSPs:
Score = 421 (208.3 bits), Expect = 7.8e-52, P = 7.8e-52
Identities = 80/154 (51%), Positives = 99/154 (64%), Frame = -1
Query: 64 VLFV-NVASY*GLTGQ-YIELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTLKY 121
VL + NVAS *G T + Y ++N LQ L P GLV+LGFPCNQFG QE N EIL +LKY
Sbjct: 764 VLLIENVASL*GTTVRDYTQMNELQRHLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKY 585
Query: 122 VRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSE---LLGTSDRLF-WEPMKVH 177
VRPGGGF PNF LFEKG+VNG + + FL+ + P S+ L T +L W
Sbjct: 584 VRPGGGFQPNFMLFEKGEVNGAGAHTLFAFLREALPAPSDDATALMTDPKLITWSLVCRN 405
Query: 178 DIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDI 211
D+ WNFEKFLVGPDG+P+ R+ R ++ DI
Sbjct: 404 DVAWNFEKFLVGPDGVPLRRYSRRFETIDIEPDI 303
>AADA01275713 dna:contig chromosome:CHIMP1A:2_random:38844896:38848789:1
Length = 3894
Plus Strand HSPs:
Score = 277 (137.8 bits), Expect = 8.8e-48, Sum P(2) = 8.8e-48
Identities = 52/108 (48%), Positives = 66/108 (61%), Frame = +3
Query: 108 EPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSE---LLG 164
E N EIL +LKYVRPGGGF PNF LFEK +VNG + + FL+ + P S+ L
Sbjct: 972 ENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALM 1151
Query: 165 TSDRLF-WEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDI 211
T +L W P D+ WNFEKFLVGPDG+P+ R+ R ++ DI
Sbjct: 1152 TDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDI 1295
Score = 161 (81.1 bits), Expect = 8.8e-48, Sum P(2) = 8.8e-48
Identities = 33/70 (47%), Positives = 42/70 (60%), Frame = +2
Query: 39 TIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASY*GLTGQ-YIELNALQEELAPFGLVIL 97
++Y + A + G E + GK L NVAS *G T + Y ++N LQ L P GLV+L
Sbjct: 488 SVYAFSARPLAGGEPVSLGSLRGKVLLIENVASL*GTTVRDYTQMNELQRRLGPRGLVVL 667
Query: 98 GFPCNQFGKQ 107
GFPCNQFG Q
Sbjct: 668 GFPCNQFGHQ 697
Score = 43 (23.4 bits), Expect = 1.5e-30, Sum P(2) = 1.5e-30
Identities = 9/20 (45%), Positives = 11/20 (55%), Frame = +1
Query: 91 PFGLVILGFPCNQFGKQEPG 110
P G +LG P + G EPG
Sbjct: 484 PVGVCLLGAPAGRRGACEPG 543
>AADA01084509 dna:contig chromosome:CHIMP1A:14:64069426:64090994:-1
Length = 21,569
Plus Strand HSPs:
Score = 241 (120.2 bits), Expect = 2.6e-41, Sum P(2) = 2.6e-41
Identities = 49/107 (45%), Positives = 68/107 (63%), Frame = +1
Query: 111 ENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCP-PTSE--LLGTSD 167
+N EIL +LKYVRPGGG+ P F L +K +VNG+ E+ + +LK+ P P + L T
Sbjct: 11668 QNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPKFAYLKDKLPYPYDDPFSLMTDP 11847
Query: 168 RLF-WEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRT--TVSNVKMDI 211
+L W P + D+ WNFEKFL+GP+G P R+ RT T+ N+ DI
Sbjct: 11848 KLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYS-RTFPTI-NIEPDI 11982
Score = 159 (80.1 bits), Expect = 2.6e-41, Sum P(2) = 2.6e-41
Identities = 34/73 (46%), Positives = 47/73 (64%), Frame = +1
Query: 36 ISGTIYEYGALTID