genewise $Name: wise2-2-0 $ (unreleased release) This program is freely distributed under a GPL. See source directory Copyright (c) GRL limited: portions of the code are from separate copyright Query protein: Homo_sapiens_SelV Comp Matrix: blosum62.bla Gap open: 12 Gap extension: 2 Start/End local Target Sequence 19 Strand: forward Start/End (protein) local Gene Paras: human.gf Codon Table: codon.table Subs error: 1e-05 Indel error: 1e-05 Model splice? model Model codon bias? flat Model intron bias? tied Null model syn Algorithm 623 genewise output Score 738.71 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info Homo_sapiens_Se 1 MNNQARTPAPSSARTSTSVRASTPTRTPTPLRTPTPVRTRTPIRTLTPV MNNQARTPAPSSARTSTSVRASTPTRTPTPLRTPTPVRTRTPIRTLTPV MNNQARTPAPSSARTSTSVRASTPTRTPTPLRTPTPVRTRTPIRTLTPV 19 3145 aaacgcacgcttgcatatgcgtacacacacccacacgcacacacacacg taaacgcccccccgcccctgcccccgcccctgcccctgcgcctgctcct gtcgggcacccgggtacacgttcgcgagtacgcgtgcgtgcccgcgtac Homo_sapiens_Se 50 LTPSPAGTSPLVLTPAPAQIPTLVPTPALARIPRLVPPPAPAWIPTPVP LTPSPAGT PLVLTPAPAQIPTLVPTPALARIPRLVPPPAPAWIPTPVP LTPSPAGTPPLVLTPAPAQIPTLVPTPALARIPRLVPPPAPAWIPTPVP 19 3292 cactcggacccgcacgcgcacacgcacgcgcacccgcccgcgtacacgc tcccccgccctttcccccatccttcccctcgtcgttccccccgtccctc gtgtacgtctgcgtctacgcctgcctctgcgcctgtgtttgcgcttgcg Homo_sapiens_Se 99 TPVPVRNPTPVPTPARTLTPPVRVPAPAPAQLLAGIRAALPVLDSYLAP TPVPVRNPTPVPTPARTLTPPVRVPAPAPAQLLAGIRAALPVLDSYLAP TPVPVRNPTPVPTPARTLTPPVRVPAPAPAQLLAGIRAALPVLDSYLAP 19 3439 acgcgcacacgcacgcacaccgcgcgcgcgcccggacggccgtgttcgc cctctgaccctccccgctccctgtccccccattcgtgcctcttacatcc tttccgcatgcgtgtgcgttacgcacacacgcgagtgcgcccgcccgcg Homo_sapiens_Se 148 ALPLDPPPEPAPELPLLPEEDPEPAPSLKLIPSVSSEAGPAPGPLPTRT ALPLDPPPEPAPELPLLPEEDPEPAPSLKLIPSVSSEAGPAPGPLPTRT ALPLDPPPEPAPELPLLPEEDPEPAPSLKLIPSVSSEAGPAPGPLPTRT 19 3586 gcctgcccgcgcgccttcgggcgcgcacacactgtagggcgcgcccaca ctctacccacccatcttcaaacacccgtattcctcgacgcccgctccgc catgtgcgattgggtggcggctggggcggccggcccgcgccggctcgcc Homo_sapiens_Se 197 PLAANSPGPTLDFTFRADPSAIGLADPPIPSPVPSPILGTIPSAISLQN PLAANSPGPTLDFTFRADPSA GLADPPIPSPVPSPILGTIPSAISLQN PLAANSPGPTLDFTFRADPSATGLADPPIPSPVPSPILGTIPSAISLQN 19 3733 ccggatcgcacgtataggctgagcggccacacgctcacgaactgattca ctccaccgcctatctgcaccccgtcacctcgctcccttgctccctctaa ggcgcacgccgccccgacggccgggtcctcttccgccggccggcccagt Homo_sapiens_Se 246 CTETFPSSSENFALDKRVLIRVTY TETFPSSSENFALDKRVLIRVTY STETFPSSSENFALDKRVLIRVTY C:C[tgt] 19 3880 tagatcttagatgcgaagcacgatTGGTGAGGA Intron 1 ccactcccgaatctaagtttgtca <2-----[3954 : 6532] tgatcccccgccggcggcgtagcc Homo_sapiens_Se 270 GLCSYSLR YILLKKSLEQQFPN GL SYSLR YILLKKSLEQQFPN GLXSYSLR YILLKKSLEQQFPN 19 6530 CAGTgctataccGTGAGTA Intron 2 CAGtaccaaacgcctca -2> gtggagtg<0-----[6558 : 6664]-0>atttaagtaaatca ccactctg ctagagcgggatgt Homo_sapiens_Se 293 HLLF EEDRAAQATGEFEVFVNGRLVH HLLF EEDRAAQATGEFEVFVNGRLVH HLLF EEDRAAQATGEFEVFVNGRLVH 19 6707 ccctGTAAGTG Intron 3 CAGgggaggcgaggtggtgagacgc attt<0-----[6719 : 6827]-0>aaagccaccgatatttaggtta cact ggcatcgtaggtggtgcgagct Homo_sapiens_Se 319 SKK RGDGFVNESRLQKIVSVIDEEIK SKK RGDGFVNESRLQKIVSVIDEEIK SKK RGDGFVNESRLQKIVSVIDEEIK 19 6894 taaGTGATCC Intron 4 CAGagggtgagtaccaagagagggaa caa<0-----[6903 : 6995]-0>ggagttaacgtaattgttaaata cgg gttctgtgcgggatgctctggcg Homo_sapiens_Se 345 KR KR KR 19 7065 aa ag ag // Gene 1 Gene 3145 7070 Exon 3145 3953 phase 0 Exon 6533 6557 phase 2 Exon 6665 6718 phase 0 Exon 6828 6902 phase 0 Exon 6996 7070 phase 0 //