Command line: [exonerate --showtargetgff --model protein2genome SelK.prot SelK.fa]
C4 Alignment display:
  Model: protein2genome
  Raw score: 438
  Aligned positions 0->94 of query
  Aligned positions 39628->45594 of target

Query: SelK
Target: 3 dna:chromosome chromosome:CHIMP1A:3:55516355:55589234:1

     1 : MetValTyrIleSerAsn{G}  >>>> Target Intron 1 >>>>  {ly}GlnVal :     8
         ||||||||||||||||||{|}           3287 bp           {||}||||||
         MetValTyrIleSerAsn{G}                             {ly}GlnVal
 39629 : ATGGTTTACATCTCGAAC{G}gt.........................ag{GA}CAAGTG : 42939

     9 : LeuAspSerArgSerGlnSerProTrpArgLeuSerLeuIleThrAspPhePheTrpGly :    28
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         LeuAspSerArgSerGlnSerProTrpArgLeuSerLeuIleThrAspPhePheTrpGly
 42940 : TTGGACAGCCGGAGTCAGTCTCCATGGAGATTATCTTTGATAACAGATTTCTTCTGGGGA : 42999

    29 : IleAlaGluPheValValLeu{Ph}  >>>> Target Intron 2 >>>>  {e}Phe :    37
         |||||||||||||||||||||{||}           1464 bp           {|}|||
         IleAlaGluPheValValLeu{Ph}                             {e}Phe
 43000 : ATAGCTGAGTTTGTGGTTTTG{TT}gt.........................ag{T}TTC : 44490

    38 : LysThrLeuLeuGlnGlnAspValLysLysArgArgSerTyrGlyAsnSerSerAspSer :    57
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         LysThrLeuLeuGlnGlnAspValLysLysArgArgSerTyrGlyAsnSerSerAspSer
 44491 : AAAACTCTGCTTCAGCAAGATGTGAAAAAAAGAAGAAGCTATGGAAACTCGTCTGATTCC : 44550

    58 : ArgTyrAspAspGlyArg{Gl}  >>>> Target Intron 3 >>>>  {y}ProPro :    66
         ||||||||||||||||||{||}            933 bp           {|}||||||
         ArgTyrAspAspGlyArg{Gl}                             {y}ProPro
 44551 : AGATACGATGATGGAAGA{GG}gt.........................ag{G}CCACCG : 45510

    67 : GlyAsnProProArgArgMetGlyArgIleAsnHisLeuArgGlyProSerProProPro :    86
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         GlyAsnProProArgArgMetGlyArgIleAsnHisLeuArgGlyProSerProProPro
 45511 : GGAAACCCTCCCCGAAGAATGGGTAGAATCAATCATCTGCGTGGCCCTAGTCCCCCTCCA : 45570

    87 : MetAlaGlyGly***GlyArg :    94
         |||||||||||||||||||||
         MetAlaGlyGly***GlyArg
 45571 : ATGGCTGGTGGATGAGGAAGG : 45594

vulgar: SelK 0 94 . 3 39628 45594 - 438 M 6 18 S 0 1 5 0 2 I 0 3283 3 0 2 S 1 2 M 29 87 S 0 2 5 0 2 I 0 1460 3 0 2 S 1 1 M 27 81 S 0 2 5 0 2 I 0 929 3 0 2 S 1 1 M 29 87
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 0.8.2
##date 2006-03-17
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
3	exonerate:protein2genome	gene	39629	45594	438	-	. gene_id 2 ; sequence SelK ; gene_orientation + ;
3	exonerate:protein2genome	exon	39629	39647	.	-	. insertions 0 ; deletions 0 ;
3	exonerate:protein2genome	splice5	39648	39649	.	-	. intron_id 1 ; splice_site "GT" ;
3	exonerate:protein2genome	intron	39648	42934	.	-	. intron_id 1 ;
3	exonerate:protein2genome	splice3	42933	42934	.	-	. intron_id 0 ; splice_site "AG" ;
3	exonerate:protein2genome	exon	42937	43025	.	-	. insertions 0 ; deletions 0 ;
3	exonerate:protein2genome	splice5	43026	43027	.	-	. intron_id 2 ; splice_site "GT" ;
3	exonerate:protein2genome	intron	43026	44489	.	-	. intron_id 2 ;
3	exonerate:protein2genome	splice3	44488	44489	.	-	. intron_id 1 ; splice_site "AG" ;
3	exonerate:protein2genome	exon	44491	44573	.	-	. insertions 0 ; deletions 0 ;
3	exonerate:protein2genome	splice5	44574	44575	.	-	. intron_id 3 ; splice_site "GT" ;
3	exonerate:protein2genome	intron	44574	45506	.	-	. intron_id 3 ;
3	exonerate:protein2genome	splice3	45505	45506	.	-	. intron_id 2 ; splice_site "AG" ;
3	exonerate:protein2genome	exon	45508	45594	.	-	. insertions 0 ; deletions 0 ;
3	exonerate:protein2genome	similarity	39629	45594	438	-	. alignment_id 2 ; Align 39629 1 18 ; Align 42937 8 87 ; Align 44491 38 81 ; Align 45508 66 87 ;
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis