Command line: [exonerate --showtargetgff --model protein2genome 15-kDa.prot 15_kDa.fa]
C4 Alignment display:
  Model: protein2genome
  Raw score: 752
  Aligned positions 0->162 of query
  Aligned positions 56201->104914 of target

Query: 15-kDa 
Target: panTro1_dna range=chr1:85682244-85805462 5'pad=0 3'pad=0 revComp=FALSE strand=? repeatMasking=none

      1 : MetAlaAlaGlyProSerGlyCysLeuValProAlaPheGlyLeuArgLeuLeuLeuA :     19
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          MetAlaAlaGlyProSerGlyCysLeuValProAlaPheGlyLeuArgLeuLeuLeuA
  56202 : ATGGCGGCTGGGCCAAGTGGGTGTCTGGTGCCGGCGTTTGGGCTACGGTTGTTGTTGG :  56258

     20 : laThrValLeuGlnAla  >>>> Target Intron 1 >>>>  ValSerAlaPhe :     28
          |||||||||||||||||           10574 bp          ||||||||||||
          laThrValLeuGlnAla                             ValSerAlaPhe
  56259 : CGACTGTGCTTCAAGCGgt.........................agGTGTCTGCTTTT :  66859

     29 : GlyAlaGluPheSerSerGluAlaCysArgGluLeuGlyPheSerSerAsnLeuLeuC :     48
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          GlyAlaGluPheSerSerGluAlaCysArgGluLeuGlyPheSerSerAsnLeuLeuC
  66860 : GGGGCAGAGTTTTCATCGGAGGCATGCAGAGAGTTAGGCTTTTCTAGCAACTTGCTCT :  66919

     49 : ysSerSerCysAspLeuLeuGlyGlnPheAsnLeuLeuGlnLeuAspProAspCysAr :     67
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          ysSerSerCysAspLeuLeuGlyGlnPheAsnLeuLeuGlnLeuAspProAspCysAr
  66920 : GCAGCTCTTGTGATCTTCTCGGACAGTTCAACCTGCTTCAGCTGGATCCTGATTGCAG :  66976

     68 : gGlyCysCysGlnGluGluAlaGlnPheGluThrLysLys  >>>> Target Intr :     81
          ||||||||||||||||||||||||||||||||||||||||           20693 b
          gGlyCysCysGlnGluGluAlaGlnPheGluThrLysLys                  
  66977 : AGGATGCTGTCAGGAGGAAGCACAATTTGAAACCAAAAAGgt................ :  67020

     82 : on 2 >>>>  LeuTyrAlaGlyAlaIleLeuGluValCysGly***LysLeuGlyAr :     96
          p          |||||||||||||||||||||||||||||||||||||||||||||||
                     LeuTyrAlaGlyAlaIleLeuGluValCysGly***LysLeuGlyAr
  67021 : .........agCTGTATGCAGGAGCTATTCTTGAAGTTTGTGGATGAAAATTGGGAAG :  87756

     97 : gPheProGlnValGln{A}  >>>> Target Intron 3 >>>>  {la}PheVal :    104
          ||||||||||||||||{|}           12507 bp          {||}||||||
          gPheProGlnValGln{A}                             {la}PheVal
  87757 : GTTCCCTCAAGTCCAA{G}gt.........................ag{CT}TTTGTT : 100287

    105 : ArgSerAspLysProLysLeuPheArgGlyLeuGlnIleLys  >>>> Target In :    119
          ||||||||||||||||||||||||||||||||||||||||||           4453 
          ArgSerAspLysProLysLeuPheArgGlyLeuGlnIleLys                
 100288 : AGGAGTGATAAACCCAAACTGTTCAGAGGACTGCAAATCAAGgt.............. : 100334

    120 : tron 4 >>>>  TyrValArgGlySerAspProValLeuLysLeuLeuAspAspAsn :    133
          bp           |||||||||||||||||||||||||||||||||||||||||||||
                       TyrValArgGlySerAspProValLeuLysLeuLeuAspAspAsn
 100335 : ...........agTATGTCCGTGGTTCAGACCCTGTATTAAAGCTTTTGGACGACAAT : 104827

    134 : GlyAsnIleAlaGluGluLeuSerIleLeuLysTrpAsnThrAspSerValGluGluP :    153
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          GlyAsnIleAlaGluGluLeuSerIleLeuLysTrpAsnThrAspSerValGluGluP
 104828 : GGGAACATTGCTGAAGAACTAAGCATTCTCAAATGGAACACAGACAGTGTAGAAGAAT : 104887

    154 : heLeuSerGluLysLeuGluArgIle :    162
          ||||||||||||||||||||||||||
          heLeuSerGluLysLeuGluArgIle
 104888 : TCCTGAGTGAAAAGTTGGAACGCATA : 104914

vulgar: 15-kDa 0 162 . panTro1_dna 56201 104914 - 752 M 25 75 5 0 2 I 0 10570 3 0 2 M 56 168 5 0 2 I 0 20689 3 0 2 M 21 63 S 0 1 5 0 2 I 0 12503 3 0 2 S 1 2 M 16 48 5 0 2 I 0 4449 3 0 2 M 43 129
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 0.8.2
##date 2006-03-16
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
panTro1_dna	exonerate:protein2genome	gene	56202	104914	752	-	. gene_id 2 ; sequence 15-kDa ; gene_orientation + ;
panTro1_dna	exonerate:protein2genome	exon	56202	56276	.	-	. insertions 0 ; deletions 0 ;
panTro1_dna	exonerate:protein2genome	splice5	56277	56278	.	-	. intron_id 1 ; splice_site "GT" ;
panTro1_dna	exonerate:protein2genome	intron	56277	66850	.	-	. intron_id 1 ;
panTro1_dna	exonerate:protein2genome	splice3	66849	66850	.	-	. intron_id 0 ; splice_site "AG" ;
panTro1_dna	exonerate:protein2genome	exon	66851	67018	.	-	. insertions 0 ; deletions 0 ;
panTro1_dna	exonerate:protein2genome	splice5	67019	67020	.	-	. intron_id 2 ; splice_site "GT" ;
panTro1_dna	exonerate:protein2genome	intron	67019	87711	.	-	. intron_id 2 ;
panTro1_dna	exonerate:protein2genome	splice3	87710	87711	.	-	. intron_id 1 ; splice_site "AG" ;
panTro1_dna	exonerate:protein2genome	exon	87712	87775	.	-	. insertions 0 ; deletions 0 ;
panTro1_dna	exonerate:protein2genome	splice5	87776	87777	.	-	. intron_id 3 ; splice_site "GT" ;
panTro1_dna	exonerate:protein2genome	intron	87776	100282	.	-	. intron_id 3 ;
panTro1_dna	exonerate:protein2genome	splice3	100281	100282	.	-	. intron_id 2 ; splice_site "AG" ;
panTro1_dna	exonerate:protein2genome	exon	100285	100332	.	-	. insertions 0 ; deletions 0 ;
panTro1_dna	exonerate:protein2genome	splice5	100333	100334	.	-	. intron_id 4 ; splice_site "GT" ;
panTro1_dna	exonerate:protein2genome	intron	100333	104785	.	-	. intron_id 4 ;
panTro1_dna	exonerate:protein2genome	splice3	104784	104785	.	-	. intron_id 3 ; splice_site "AG" ;
panTro1_dna	exonerate:protein2genome	exon	104786	104914	.	-	. insertions 0 ; deletions 0 ;
panTro1_dna	exonerate:protein2genome	similarity	56202	104914	752	-	. alignment_id 2 ; Align 56202 1 75 ; Align 66851 26 168 ; Align 87712 82 63 ; Align 100285 104 48 ; Align 104786 120 129 ;
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis