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| The name of your search is: | default |
| Search for sites by WeightMatrix library: | matrixTFP60.lib | | Sequence file: | UPS_ORF13_pRi2659.seq | | Matrix groups: | all | | Cut-offs: | to minimize false positive matches | |
| Scanning sequence ID: ORF13_UPS Arhizogenes; |
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matrix position core matrix sequence (always the factor name
identifier (strand) match match (+)-strand is shown)
V$CDXA_01 4 (+) 1.000 1.000 ATTTAtg CdxA
V$CDXA_02 4 (+) 1.000 0.994 aTTTATg CdxA
V$PAX4_02 13 (-) 1.000 0.971 tttAATTAttt Pax-4
V$HNF3B_01 31 (-) 1.000 0.968 aaagaAAATAgttca HNF-3beta
I$HSF_01 33 (+) 1.000 1.000 AGAAA HSF
V$CEBP_Q2 78 (-) 1.000 0.960 caatgccGCAATag C/EBP
V$PAX4_02 95 (-) 0.987 0.942 attAATTTgtc Pax-4
V$CDPCR1_01 113 (-) 0.929 0.924 gctaTCAATa CDP CR1
F$MATALPHA2_01 140 (+) 1.000 0.973 aCATGTttaa MATalpha2
I$BRCZ3_01 144 (+) 1.000 0.958 gtttaAACTAggcaa BR-C Z3
F$HSF_01 163 (-) 1.000 1.000 GTTCT HSF
I$BRCZ4_01 180 (+) 1.000 0.975 ataATAAAgacaa BR-C Z4
I$HSF_01 192 (+) 1.000 1.000 AGAAA HSF
V$PAX4_04 193 (+) 0.943 0.841 GAAAAttagcccactctaaaaagtcacata Pax-4
V$CDXA_01 233 (-) 0.986 0.987 caTAAAG CdxA
I$HSF_01 238 (+) 1.000 1.000 AGAAA HSF
V$PAX2_01 262 (-) 0.881 0.875 cttttaatccTTGATtatt Pax-2
V$PBX1_01 272 (-) 1.000 0.968 tTGATTatt Pbx-1
V$PAX4_02 328 (+) 1.000 0.950 caaTAATTtct Pax-4
I$HSF_01 334 (-) 1.000 1.000 TTTCT HSF
V$CEBP_01 354 (-) 0.965 0.958 cgttttACAAAca C/EBP
I$HSF_01 392 (+) 1.000 1.000 AGAAA HSF
Total sequences length=501
Total number of sites found=22
Frequency of sites per nucleotide=0.043912