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Scores Table
Alignment Score Sequence Number Sequence Name Sequence Length
SeqA Name Len(nt) SeqB Name Len(nt) Score
===========================================================
1 gi|ORF13 597 2 gi|riorf13 597 97
1 gi|ORF13 597 3 gi|orf13 594 85
2 gi|riorf13 597 3 gi|orf13 594 84
===========================================================
PLEASE NOTE: Some scores may be missing from
the above table if the alignment was done using multiple CPU mode.
Please check the output.
Alignment Score Sequence Number Sequence Name Sequence Length
Alignment
CLUSTAL W (1.83) multiple sequence alignment
gi|riorf13 A TGGCTCGTT A TTTCGGC A GT A GCTCTC AA CGGCTTC A TGTCG A TG A TTTTCGTTTT A TC 60
gi|ORF13 A TGGCTCGTT A TTTCGGTGGT A GCTCTC AA CGGCTTC A TGTCG A TG A TTTTCGTTTG A TC 60
gi|orf13 A TGGCTCGTTCTT A CGGT A GCTCTCG A CGGTTTC A T A TCG A TG A GTTTCGTTGG A TC AA G 60
********** ** *** * * * * * ** * * * * *
gi|riorf13 AA GG A GCCC A CTCG A CTG AA GGCTC A GCTTGTT AA TGTGGTGG AAA CCT A C AA GGCTGT A 120
gi|ORF13 AA GG A GCCC A CTCG A CTG AA GGCTC A GCTTGTT AA TGTGGTGG AAA CCT A C AA GGCTGC A 120
gi|orf13 G A GCCC A CTCG A TTG AA GGCTC A GCTTCT AAA TGTGGTGG A GGCCC A C AA GTCTGC A C AA 120
** * * * ** * **** ** * * ** *
gi|riorf13 C AAA C A G A G A CGTT AAA GT A CT A T A T A TC A TCTGC AA CTG A GCGTGTGGCTC A TGTGG A G 180
gi|ORF13 C AAA C A G A G A CGTT AAA GT A CT A T A T A CC A TCTGC AA CTG A GCGTGTGGCTC A T A TGG A G 180
gi|orf13 A G A G A G A CGTT AAA GT A CT A T A T A CC A TCTGC A GCTG A GC A TTGGGCTC A TGC A G A GGCT 180
* * * ** * * * ** * * * * **
gi|riorf13 GC A GTCC A TGTCG A C AA TGC A G AAA TGGGGCTGC A TCCGGCCGGGTTT AA GT A TCCTCTG 240
gi|ORF13 GC A GTCC A TGTC AA C AA TGC A G AAA TGGGGCTGC A TCCGGCCGGGTTC AA GT A TCCTCTG 240
gi|orf13 GCCT A TGTC AA CG A TGCGG AAA TGG A GCTGC A TC A GGCTGGGTGG AA GT A TCCTTTGTCC 240
** * * * * * ** ** * * ** * *
gi|riorf13 TCCTTCGTCTTT A CCTCCCTGGCCGTGGCT AAA GCCTGC AA GG A G AA C AA GC A TCTCGTG 300
gi|ORF13 TCCTTCGTCTTT A CCTCCCTGGCCGTGGCT AAA GCCTGC AA GG A G AA C AA GC A TCTCGTG 300
gi|orf13 TTCGTCTTT A CCTCCCTGG A CGTGGCT AAA GCCTGC AA GG A G AA C AA GC A CCTCTTGTGC 300
* * ** * ** * * * ** * ** * * *
gi|riorf13 TGCG A GG A GC A TTTGG A GGG A G A TCTG A T A TCGTGCGTCGTTCCTCCCT A TC A G A C AAA T 360
gi|ORF13 TGCG A GG A GC A TTTGG A GGG A G A TCTG A T A TCGTGCGTCGTTCCTCCCT A TC A G A C AAA T 360
gi|orf13 AA GG AA G A TTCGG A TGGGC A GCTGTTCGCCTGCGCCGTTCCTCCTT A TC A G A C AAA CGT A 360
** ** * * * * *** **** * *
gi|riorf13 GTCTCTCTCGCTGCTTT AA GGG A G A TCC A C AA TTCCGTTTCGGG A GG A GGGT A CCTGG A T 420
gi|ORF13 GTCTC A CTCGCTGCTTT AA GGG A G A TCC A C AA TTCC A TTTCGGG A GG A GGGT A CCGG AA T 420
gi|orf13 TC A CTGGCGGCTTT AA GGG AAA TTC A C AA TTCCGTTTCGGG A GG A G A GT A CC A GG AA G AA 420
*** * * **** * *
gi|riorf13 CC AA C A G A C A TGG A TT A TTTTGTGGCG A TCTTGCC A G A TG AAAA TTTCG A CT A TC A G A GC 480
gi|ORF13 CC AA C A G A C A TGG A TT A TTTTGTGGCG A TCTTGCC A G A TG AAAA TTTCG A CT A TC A G A GC 480
gi|orf13 G AA G A C A TGG A TT A TTTTGTGGCG A TTTTCCC AAA TG AAAA TTTT AA CT A TG A G A GCTGT 480
* *** * * * * ** ** * * * * * *
gi|riorf13 TGCG AAA TTGTC A CC AAAAA TGGCGGCG AA GG A CTTTGC AA G A TTT A T A GC A G A C AA CTG 540
gi|ORF13 TGTG AAA TTGTC A CC AAAAA TGGCGGCG AA GGCCTTTGC AA G A TTT A T A GC A G A C AA CTG 540
gi|orf13 G AAA TCGTG A C A CG AA GTGGCGGC AAA GG AA TTTGC AA G A TTT A T A GC A GGG AA CTGGGG 540
* * *** * * * * ** ** *
gi|riorf13 G A TGGGCCCTT A GCTT A TG AA GCC A T A CTGGC AA TTGGC AA GGTCCTGTTGG AA T A G 597
gi|ORF13 G A GGGGCCCTT A GCTT A TG A GGCC A T A CTGGC AA TTGGC AA GGTCCTGTTGG AA T A G 597
gi|orf13 G A GCCTTT A GCTT A TG A TGCC A T A CTGGC AA TCGGC AA GGTGCTGCTGG AA T A G --- 594
** * *** * * * *** *
PLEASE NOTE: Showing colors on large alignments is slow. Guide Tree
(
gi|ORF13:0.01088,
gi|riorf13:0.01593,
gi|orf13:0.13896);
Cladogram
Right-click on the above tree to see display options.how to print a Phylogram or Cladogram .
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