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Scores Table
Alignment Score Sequence Number Sequence Name Sequence Length
SeqA Name Len(nt) SeqB Name Len(nt) Score
===================================================================================
1 gi|ORF13-UPS_pRi2659 501 2 gi|riorf17-UPS_pRi1724 501 98
1 gi|ORF13-UPS_pRi2659 501 3 gi|orf13-UPS_pRi8196 501 66
2 gi|riorf17-UPS_pRi1724 501 3 gi|orf13-UPS_pRi8196 501 66
===================================================================================
PLEASE NOTE: Some scores may be missing from
the above table if the alignment was done using multiple CPU mode.
Please check the output.
Alignment Score Sequence Number Sequence Name Sequence Length
Alignment
CLUSTAL W (1.83) multiple sequence alignment
gi|ORF13-UPS_pRi2659 ---------------------TCC A TTT -A TGTTTTT AA TT A TTTGTGT A 28
gi|riorf17-UPS_pRi1724 ---------------------TCC A TTT -A TGTTTTT AA TT A TTTGTGT A 28
gi|orf13-UPS_pRi8196 TTTGTTTG AAA TT AA GCCTTTTCTGTTTG A C A TTTGTT A TGGCTTTCTT A 50
** *** * *** * ** ** **
gi|ORF13-UPS_pRi2659 --TT AAA G AAAA T A GTTC --A C A T A GCCGC AA T A T A TG A CCG AA GCTGGC 74
gi|riorf17-UPS_pRi1724 --TT AAA G AAAA T A GTTC --A C A T A GCCGC AA T A T A TG A CCG AA GCTGGC 74
gi|orf13-UPS_pRi8196 GGCT A GTTTT AA TCGTTCTC A C A C A GCCGC AA T A T A TG A CC -A C A CT A GC 99
** *** **** *** ***************** * ** **
gi|ORF13-UPS_pRi2659 CCGC AA TGCCGC AA T A G A TG A TT AA TTTGTC AAA CTT A GCT A TC AA T A TC 124
gi|riorf17-UPS_pRi1724 CC A C AA TGCCGC AA T A G A TG A TT AA TTTGTC AAA CTT A GCT A TC AA T A TC 124
gi|orf13-UPS_pRi8196 CC A CT -CGCCGT AAAA G A TG A TT AA TCT A CCG AAA TT A GCT A CCG AA CTC 148
** * **** ** *********** * * ** ******* * * **
gi|ORF13-UPS_pRi2659 TCG A T A G AA GTGCCC A C A TGTTT AA ---A CT A GGC AAA CTCGTTCTCCTT 171
gi|riorf17-UPS_pRi1724 TCG A T A GG A GTGCCG A C A TGTTT AA ---A CC A GGC AAA CTCGTTCTCCTT 171
gi|orf13-UPS_pRi8196 TC AAAA G AA GTGCCG A C A TGTTTTCCTT A CC A TGT AAA GTC A T A CTCCTT 198
** * ** ****** ******** ** * * *** ** * ******
gi|ORF13-UPS_pRi2659 G AAAA CTG A T AA -T AAA G A C AA G AAAA TT A GCCC A CTCT AAAAA GTC A C A 220
gi|riorf17-UPS_pRi1724 G AAAA CTG A T AA -T AAA G A C AA G AAAA TT A GCCC A CTCT AAAAA GTC A C A 220
gi|orf13-UPS_pRi8196 G AAAA TCG A T AAA T AA CG A C AAAAAA GT A GCCT AA TTTTTTC AA G A C -T A 247
***** ***** *** ***** *** * * * * * *** * *
gi|ORF13-UPS_pRi2659 T A GC AAA TTC AA C A T AAA G AAA CC A G AA -GTC A G -A GG AAA G A CTTTT AA 268
gi|riorf17-UPS_pRi1724 T A GC AAA TTC AA C A T AAA G AAA CC A G AA -GTC A G -A GG AAA G A CTTTT AA 268
gi|orf13-UPS_pRi8196 GCGTG AA TTC AA C A T AA GG AAA CC AAAAA GTCGGG AA GG A TG A CTTTTGT 297
* ************ ******* ** *** * * * * *******
gi|ORF13-UPS_pRi2659 TCCTTG A TT A TTTG AA CG AAA T A GCCGC AA T A CGCC AAA GTGTCGCCTTC 318
gi|riorf17-UPS_pRi1724 TCCTTG A TT A TTTG AA C AAAA T A GCCGC AA T A CGCC AAA GTGTCGCCTTC 318
gi|orf13-UPS_pRi8196 TCCTG AA TT A TTTG AA C A C AA TGGGGGCT A C ------------------- 328
**** *********** *** * ** *
gi|ORF13-UPS_pRi2659 A TG A TTGTTC AA T AA TTTCTGT A GC AAA TGG AAAA CGTTTT A C AAA C AA T 368
gi|riorf17-UPS_pRi1724 A TG A TTGTTC AA T AA TTTCTGT A GC AAA TGG AAAA CGTTTT A C AAA C AA T 368
gi|orf13-UPS_pRi8196 -TG A TT ----------TTCTGT A GC AAA T A G AAAA CGTTTT A -AA GC AA T 366
***** ************* ************ ** ****
gi|ORF13-UPS_pRi2659 GTGGCCTTGG A GT AA T AA TCGG AA G AAAA GTTC A T AA GTC A G A T AA TTTG 418
gi|riorf17-UPS_pRi1724 GTGGCCTTGG A GT AA T AA TCGG AA G AAAA GTTC A T AA GTC A G A T AA TTTG 418
gi|orf13-UPS_pRi8196 A TGTCCTTGG A GT AA T AA CCGG AA G AAAA TGTC A TGC -CC AAA T AA TTTG 415
** ************** ********** **** ** ********
gi|ORF13-UPS_pRi2659 CGTTGCTG A C A CT A GTG A CC AA GC A CCTTT AAA T A CC -TCTGCTTCCC A T 467
gi|riorf17-UPS_pRi1724 CGTTGCTG A C A CT A GTG A CC AA GC A CCTTT AAA T A CC -TCTGCTTCCC A T 467
gi|orf13-UPS_pRi8196 CGTTGCTG A C A CT A TTT A CC AA CC A CCTTT AAA T AA CGTCTGCTTCCC A T 465
************** * ***** ************ * ************
gi|ORF13-UPS_pRi2659 GC A TTTTT -CC AA GTT AA CCT AAA GTGG -C A GTTG A 501
gi|riorf17-UPS_pRi1724 GC A TTTTG -CC AA GTT AA CCT AAA CTGG -C A GTTG A 501
gi|orf13-UPS_pRi8196 GC A TTTTTGCC AA GTTG AA C AAA CCT AAA T A TTTG A 501
******* ******* * * ** * * ****
PLEASE NOTE: Showing colors on large alignments is slow. Guide Tree
(
gi|ORF13-UPS_pRi2659:0.00798,
gi|riorf17-UPS_pRi1724:0.00599,
gi|orf13-UPS_pRi8196:0.32535);
Phylogram
Right-click on the above tree to see display options.how to print a Phylogram or Cladogram .
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