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BLASTN 2.2.13 [Nov-27-2005] 

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman 
(1997), "Gapped BLAST and PSI-BLAST: a new generation of 
protein database search programs", Nucleic Acids Res. 25:3389-3402.

RID: 1142810726-3410-7900797260.BLASTQ4


Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
           3,793,279 sequences; 16,835,315,887 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs
Taxonomy reports


Query=  gi|38985|emb|X03433.1|ARTLROLB A. rhizogenes pRiA4 plasmid TL-DNA rolB-C 
genes
Length=2949

Distribution of 60 Blast Hits on the Query Sequence


                                                                   Score     E
Sequences producing significant alignments:                        (Bits)  Value

gi|38985|emb|X03433.1|ARTLROLB  A. rhizogenes pRiA4 plasmid TL-DN  5846    0.0   
gi|73810201|gb|DQ160187.1|  Agrobacterium rhizogenes strain A4...  1796    0.0   
gi|468518|emb|X64255.1|ARROLDNA  A.rhizogenes genes rolA, rolB, r   456    2e-125  Gene info
gi|10567310|dbj|AP002086.1|  Agrobacterium rhizogenes plasmid pRi   448    4e-123
gi|2440224|dbj|AB006689.1|  Agrobacterium rhizogenes plasmid p...   448    4e-123  Gene info
gi|599608|emb|Z29365.1|ARCUCROL  A.rhizogenes (NCPPB2659) DNA ...   394    5e-107
gi|6706117|emb|AJ271050.1|ARH271050  Agrobacterium rhizogenes ...   394    5e-107
gi|142245|gb|M60490.1|ATUORF  Agrobacterium rhizogenes ORFs 10...   194    1e-46 
gi|38983|emb|X12579.1|ARROLA  Agrobacterium rhizogenes Ri plasmid  60.0    4e-06 
gi|452715|emb|X77327.1|AVIAAM  A.vitis iaaM, ipt, nos, 6b protein  44.1    0.22  
gi|57546753|dbj|BA000030.2|  Streptomyces avermitilis MA-4680 gen  44.1    0.22  
gi|510732|emb|X74123.1|ATPTIDNA  A.tumefaciens plasmid Ti DNA ...  44.1    0.22  
gi|5869539|dbj|AB032122.1|  Agrobacterium tumefaciens plasmid ...  44.1    0.22  
gi|9656679|gb|AE004286.1|  Vibrio cholerae O1 biovar eltor str...  42.1    0.89    Gene info
gi|2352977|gb|AF014113.1|AF014113  Vibrio cholerae potential f...  42.1    0.89  
gi|56160984|gb|CP000002.2|  Bacillus licheniformis ATCC 14580, co  40.1    3.5   
gi|52346357|gb|AE017333.1|  Bacillus licheniformis DSM 13, comple  40.1    3.5   
gi|32468743|emb|Z99111.2|BSUB0008  Bacillus subtilis complete ...  40.1    3.5   
gi|36784828|emb|BX571864.1|  Photorhabdus luminescens subsp. l...  40.1    3.5   
gi|2632216|emb|AJ222587.1|BS16829KB  Bacillus subtilis 29kB DN...  40.1    3.5   
gi|24204616|gb|AE010300.1|  Leptospira interrogans serovar lai...  40.1    3.5   
gi|2351762|gb|U89708.1|LIU89708  Leptospira interrogans serova...  40.1    3.5   
gi|45602555|gb|AE016823.1|  Leptospira interrogans serovar Cop...  40.1    3.5   


Alignments


  

>gi|38985|emb|X03433.1|ARTLROLB  A. rhizogenes pRiA4 plasmid TL-DNA rolB-C genes
Length=2949

 Score = 5846 bits (2949),  Expect = 0.0
 Identities = 2949/2949 (100%), Gaps = 0/2949 (0%)
 Strand=Plus/Plus

Query  1     TTCAAAAAAAGCGCGATGAAATCAAGTATCCAGTTATTAAACCAGATCTTGATTTTTATT  60
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1     TTCAAAAAAAGCGCGATGAAATCAAGTATCCAGTTATTAAACCAGATCTTGATTTTTATT  60

Query  61    ACATTAATACTTCTTAAAGGGAAACAAGTGACACACTCAGCTTCTCCTGACATCAAACTC  120
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61    ACATTAATACTTCTTAAAGGGAAACAAGTGACACACTCAGCTTCTCCTGACATCAAACTC  120

Query  121   GTCAGCCCATCGACTAACCATTAGCCGATTGCAAACTTGCACTCGCCATGCCTCACCAAC  180
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121   GTCAGCCCATCGACTAACCATTAGCCGATTGCAAACTTGCACTCGCCATGCCTCACCAAC  180

Query  181   TCACCAGGTTCGAACCTAAGCTGGGTGCTGGCATAGAGGTCGAATGTCAGACACTTTCCC  240
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181   TCACCAGGTTCGAACCTAAGCTGGGTGCTGGCATAGAGGTCGAATGTCAGACACTTTCCC  240

Query  241   TTTGTCGAAGTTAGCTCCATCTGCTCATTCAGCTTGATGACACGCCCAGGGAAAGAAAAT  300
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241   TTTGTCGAAGTTAGCTCCATCTGCTCATTCAGCTTGATGACACGCCCAGGGAAAGAAAAT  300

Query  301   GCAGCGAAGTAGGCGCTCCGCATAGGATCCGCGTAACCGAAAAAACCTGATGCTTGCCTG  360
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301   GCAGCGAAGTAGGCGCTCCGCATAGGATCCGCGTAACCGAAAAAACCTGATGCTTGCCTG  360

Query  361   AGCCCTCTATTGACCTCATCGAGAGTCACATCATGCTGGTACGGGGGAAGGTTGGTGAGG  420
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  361   AGCCCTCTATTGACCTCATCGAGAGTCACATCATGCTGGTACGGGGGAAGGTTGGTGAGG  420

Query  421   AGTGCGCCTTGCATCCAATTGTAAGGCAAGGACCCTCCATAGAAGCAGAGCATCATCGTC  480
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  421   AGTGCGCCTTGCATCCAATTGTAAGGCAAGGACCCTCCATAGAAGCAGAGCATCATCGTC  480

Query  481   GGGCAGTCGACGTAGAGGTACAGCAGCCCGTGGCCCACCGACCCTCCTTCTTCGTCAATA  540
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  481   GGGCAGTCGACGTAGAGGTACAGCAGCCCGTGGCCCACCGACCCTCCTTCTTCGTCAATA  540

Query  541   TCCATCGATTGATTCTCACCCGGCTCGATCAAGGGTTTACGCTCATTTGAGGCGTTCTTC  600
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  541   TCCATCGATTGATTCTCACCCGGCTCGATCAAGGGTTTACGCTCATTTGAGGCGTTCTTC  600

Query  601   ATGTGTCTAGCTAGCTCATCGCTGCTTGTCACATCCTCCACTTTGAGCTTGAAAAAGAGA  660
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  601   ATGTGTCTAGCTAGCTCATCGCTGCTTGTCACATCCTCCACTTTGAGCTTGAAAAAGAGA  660

Query  661   GAACACAGGTCGTCTTCAGCCATGTTAACAAAGTAGGAAACAGGTTGCTTGTACCCATAA  720
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  661   GAACACAGGTCGTCTTCAGCCATGTTAACAAAGTAGGAAACAGGTTGCTTGTACCCATAA  720

Query  721   CTCGAAGCATCCAAACTATTTATAATCCAGAGCTCTTAGCGTATTGGAGCAAATAATAAA  780
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  721   CTCGAAGCATCCAAACTATTTATAATCCAGAGCTCTTAGCGTATTGGAGCAAATAATAAA  780

Query  781   AATATTTGAGTTAGGTATAGGTCCACAAATTTATTAATTAATGGATGCGGCTGTCGATGC  840
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  781   AATATTTGAGTTAGGTATAGGTCCACAAATTTATTAATTAATGGATGCGGCTGTCGATGC  840

Query  841   TCCACGTCGCCTCGTTGTGCGAATATAGAAGGGACACCTGCCTGCTTTTAATTGTTTTTA  900
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  841   TCCACGTCGCCTCGTTGTGCGAATATAGAAGGGACACCTGCCTGCTTTTAATTGTTTTTA  900

Query  901   CTTATTAGGTTTAAAGCTCAGCGACCCACGTGAGGGAATAGGTTCTGTCCTCCAATAATG  960
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  901   CTTATTAGGTTTAAAGCTCAGCGACCCACGTGAGGGAATAGGTTCTGTCCTCCAATAATG  960

Query  961   GTGGTTTGTGGTCTATGGAATCTCAGCTTTTGCTTTTTCCTTTAATAATGGGACGCACCC  1020
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  961   GTGGTTTGTGGTCTATGGAATCTCAGCTTTTGCTTTTTCCTTTAATAATGGGACGCACCC  1020

Query  1021  GCCTACCTTTATTTATGCTGCGGAAAGGCGCTACTTTGTCAAGCTAAACCCCACGTTAGG  1080
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1021  GCCTACCTTTATTTATGCTGCGGAAAGGCGCTACTTTGTCAAGCTAAACCCCACGTTAGG  1080

Query  1081  CCTGTCGGCACCAAAGCAACACAGCTGGCAATTTATTATAGGGTCTCTTAAAAGCACGTA  1140
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1081  CCTGTCGGCACCAAAGCAACACAGCTGGCAATTTATTATAGGGTCTCTTAAAAGCACGTA  1140

Query  1141  CATGGCCACCATTCCTTCTTAGGCTAACTGCTATTCGCCCTGCTTATTTATTTTTTATTA  1200
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1141  CATGGCCACCATTCCTTCTTAGGCTAACTGCTATTCGCCCTGCTTATTTATTTTTTATTA  1200

Query  1201  AACTCAGAAACAGAGATAATAGTTTTGCACCCACTAAACTAGTGTAAATTTGGCATATAT  1260
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1201  AACTCAGAAACAGAGATAATAGTTTTGCACCCACTAAACTAGTGTAAATTTGGCATATAT  1260

Query  1261  CTATAGCAGGTTCTCCAAAACCATGTATTTCCTTTTGGAATAATTTATTCAACACGATAA  1320
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1261  CTATAGCAGGTTCTCCAAAACCATGTATTTCCTTTTGGAATAATTTATTCAACACGATAA  1320

Query  1321  TCGCTTAAACGTATTCCCGATTGAAAAAGATTAACACATATTATTATTGCTATTATTAAT  1380
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1321  TCGCTTAAACGTATTCCCGATTGAAAAAGATTAACACATATTATTATTGCTATTATTAAT  1380

Query  1381  ACATCATTTTGGCATAGATAATTTCCGCACTATATTACATATACAATGTTAGTAATTAAT  1440
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1381  ACATCATTTTGGCATAGATAATTTCCGCACTATATTACATATACAATGTTAGTAATTAAT  1440

Query  1441  ATGATTGTGGCAATACTTTACATCTTAACCAGAAAATAGAAAAAGTATCTTGAATGCAGC  1500
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1441  ATGATTGTGGCAATACTTTACATCTTAACCAGAAAATAGAAAAAGTATCTTGAATGCAGC  1500

Query  1501  AATCTTCACGTTTGCCAATGCGCTTTCGCGAAATCCAATAGCGGGCCAACTTTAAGCTTT  1560
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1501  AATCTTCACGTTTGCCAATGCGCTTTCGCGAAATCCAATAGCGGGCCAACTTTAAGCTTT  1560

Query  1561  ACCCCACTCCTCCCAATTATGGGCATCCTTTTTTGACATCCTTTCGCTAAGGCCAAACAA  1620
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1561  ACCCCACTCCTCCCAATTATGGGCATCCTTTTTTGACATCCTTTCGCTAAGGCCAAACAA  1620

Query  1621  CACGACAAGAAAAAGCAAACCCAGTACTATGAACCCATGAACGATCACGCATGCAGTATT  1680
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1621  CACGACAAGAAAAAGCAAACCCAGTACTATGAACCCATGAACGATCACGCATGCAGTATT  1680

Query  1681  TTCGCTTGATCCAGATTTTAAGGCCTCCCGTGTCTTGCGCATCGATCTTGATGTGATTGT  1740
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1681  TTCGCTTGATCCAGATTTTAAGGCCTCCCGTGTCTTGCGCATCGATCTTGATGTGATTGT  1740

Query  1741  TGCCAAACTACCTCTGGCTTTCCCGACCAGAGACTGTGTCTGATTGGCGCCAGTTTCCGA  1800
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1741  TGCCAAACTACCTCTGGCTTTCCCGACCAGAGACTGTGTCTGATTGGCGCCAGTTTCCGA  1800

Query  1801  CGCCGTATTTTAAATGGCCCTGGCACTTGCCTTTTTCGTAACTATCCAACTCACATCACA  1860
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1801  CGCCGTATTTTAAATGGCCCTGGCACTTGCCTTTTTCGTAACTATCCAACTCACATCACA  1860

Query  1861  ATGGATCCCAAATTGCTATTCCTTCCACGATTTCAACCAGTAGATCTCACTCCAGCATGG  1920
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1861  ATGGATCCCAAATTGCTATTCCTTCCACGATTTCAACCAGTAGATCTCACTCCAGCATGG  1920

Query  1921  AGCCAGATAAACCTATTCGAGGGGATCCGATTTGCTTTTGCAATCTATAGCCGTGACTAT  1980
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1921  AGCCAGATAAACCTATTCGAGGGGATCCGATTTGCTTTTGCAATCTATAGCCGTGACTAT  1980

Query  1981  AGCAAACCCCTCCTGCATTTCCAGAAACGATGGGCTCTTGCAGTGCTAGATTTGAAGGAA  2040
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1981  AGCAAACCCCTCCTGCATTTCCAGAAACGATGGGCTCTTGCAGTGCTAGATTTGAAGGAA  2040

Query  2041  AACTCTCCACCGATATATATACTTAAACAACTAGCTGAGCTCTTGAAGAACAAAGTCTGC  2100
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2041  AACTCTCCACCGATATATATACTTAAACAACTAGCTGAGCTCTTGAAGAACAAAGTCTGC  2100

Query  2101  TATCATCCTCCTATGTTTGTTAGTCAGCCGGATCTGGCTCGAGAAAACGACCAACATGTA  2160
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2101  TATCATCCTCCTATGTTTGTTAGTCAGCCGGATCTGGCTCGAGAAAACGACCAACATGTA  2160

Query  2161  TTTGTCTATCTTTCTCGCGAGAAGATGCAGAAAGTGCTGAAGGAACAATCCATTACATTT  2220
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2161  TTTGTCTATCTTTCTCGCGAGAAGATGCAGAAAGTGCTGAAGGAACAATCCATTACATTT  2220

Query  2221  GGAATGGAGGCCGTGCTGGCGACAACGATTCAACCATATCGGAGCGAGCTCGCCCTCCAG  2280
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2221  GGAATGGAGGCCGTGCTGGCGACAACGATTCAACCATATCGGAGCGAGCTCGCCCTCCAG  2280

Query  2281  GAGATGCTCCGTGTTCACAACCTTGCTTGGCCGCACAGCCGCACGGAGGAACCTGATTTA  2340
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2281  GAGATGCTCCGTGTTCACAACCTTGCTTGGCCGCACAGCCGCACGGAGGAACCTGATTTA  2340

Query  2341  GAATGCTTCATCGCCATTTTCGCAAGTTCCTTGTTCATTCACTTGCTGGAGTTAAAAGTG  2400
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2341  GAATGCTTCATCGCCATTTTCGCAAGTTCCTTGTTCATTCACTTGCTGGAGTTAAAAGTG  2400

Query  2401  ACCAACGTTTACGGGAGAGAGGTAGCTTGCACCTTCTTTCTGCGGCGAGGGACTGAAAAC  2460
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2401  ACCAACGTTTACGGGAGAGAGGTAGCTTGCACCTTCTTTCTGCGGCGAGGGACTGAAAAC  2460

Query  2461  CGCCCCTATGATGTTGTAGCTTGCGGCACCACACAATTCACCAAAAATGCCCTCGGGATA  2520
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2461  CGCCCCTATGATGTTGTAGCTTGCGGCACCACACAATTCACCAAAAATGCCCTCGGGATA  2520

Query  2521  TCACGTCCGGCCGCCTCCTCACCGGAGCCAGACCTAACCCTGCGACTCTCGGGGCCTGAT  2580
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2521  TCACGTCCGGCCGCCTCCTCACCGGAGCCAGACCTAACCCTGCGACTCTCGGGGCCTGAT  2580

Query  2581  CAGGAAGGCGAGGAGGGCGTCATGAAGCCTGCTGCAGTAAACCTGAAGAAAGAAGCCTAA  2640
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2581  CAGGAAGGCGAGGAGGGCGTCATGAAGCCTGCTGCAGTAAACCTGAAGAAAGAAGCCTAA  2640

Query  2641  AGCCGACTTGAACTCCCCCTGCAGGCAACCTTTATCTATGAGTTTGTCATAAGTTCTATG  2700
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2641  AGCCGACTTGAACTCCCCCTGCAGGCAACCTTTATCTATGAGTTTGTCATAAGTTCTATG  2700

Query  2701  TACCCTCCCGCAGTCTGTGACACAGAACCTTGGGAGTTGTAGCGTACGTTGTAATGTGTT  2760
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2701  TACCCTCCCGCAGTCTGTGACACAGAACCTTGGGAGTTGTAGCGTACGTTGTAATGTGTT  2760

Query  2761  GACCTATTTTCTTGTACTAAATATTTTCTTCTGTGTTGATCCTGCTGCTGAATTTTGCCA  2820
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2761  GACCTATTTTCTTGTACTAAATATTTTCTTCTGTGTTGATCCTGCTGCTGAATTTTGCCA  2820

Query  2821  AAAACAGCACATGCTCATATGACTATCTAATCTACTACACATATATTGCAGTATCAACAA  2880
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2821  AAAACAGCACATGCTCATATGACTATCTAATCTACTACACATATATTGCAGTATCAACAA  2880

Query  2881  CAACGACACACCTGGACTTATAATATTATAGTTCAACAGTACATTTGACATAAAACATTT  2940
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2881  CAACGACACACCTGGACTTATAATATTATAGTTCAACAGTACATTTGACATAAAACATTT  2940

Query  2941  TCACGACAT  2949
             |||||||||
Sbjct  2941  TCACGACAT  2949


>gi|73810201|gb|DQ160187.1|  Agrobacterium rhizogenes strain A4 plasmid pRi rolC gene, promoter 
region
Length=928

 Score = 1796 bits (906),  Expect = 0.0
 Identities = 923/926 (99%), Gaps = 2/926 (0%)
 Strand=Plus/Minus

Query  686   TAACAAAGTAGGAAACAGGTTGCTTGTACCCATAACTCGAAGCATCCAAACTATTTATAA  745
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  925   TAACAAAGTAGGAAACAGGTTGCTTGTACCCATAACTCGAAGCATCCAAACTATTTATAA  866

Query  746   TCCAGAGCTCTTAGCGTATTGGAGCAAATAATAAAAATATTTGAGTTAGGTATAGGTCCA  805
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  865   TCCAGAGCTCTTAGCGTATTGGAGCAAATAATAAAAATATTTGAGTTAGGTATAGGTCCA  806

Query  806   CAAATTTATTAATTAATGGATGCGGCTGTCGATGCTCCACGTCGCCTCGTTGTGCGAATA  865
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  805   CAAATTTATTAATTAATGGATGCGGCTGTCGATGCTCCACGTCGCCTCGTTGTGCGAATA  746

Query  866   TAGAAGGGACACCTGCCTGCTTTTAATTGTTTTTACTTATTAGGTTTAAAGCTCAGCGAC  925
             ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  745   TAGAAGGGACACCTGCCTGCTTTTAATTGTTTTTACTTATTAGGTTTAAAGCT-AGCGAC  687

Query  926   CCACGTGAGGGAATAGGTTCTGTCCTCCAATAATGGTGGTTTGTGGTCTATGGAATCTCA  985
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  686   CCACGTGAGGGAATAGGTTCTGTCCTCCAATAATGGTGGTTTGTGGTCTATGGAATCTCA  627

Query  986   GCTTTTGCTTTTTCCTTTAATAATGGGACGCACCCGCCTACCTTTATTTATGCTGCGGAA  1045
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  626   GCTTTTGCTTTTTCCTTTAATAATGGGACGCACCCGCCTACCTTTATTTATGCTGCGGAA  567

Query  1046  AGGCGCTACTTTGTCAAGCTAAACCCCACGTTAGGCCTGTCGGCACCAAAGCAACACAGC  1105
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  566   AGGCGCTACTTTGTCAAGCTAAACCCCACGTTAGGCCTGTCGGCACCAAAGCAACACAGC  507

Query  1106  TGGCAATTTATTATAGGGTCTCTTAAAAGCACGTACATGGCCACCATTCCTTCTTAGGCT  1165
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  506   TGGCAATTTATTATAGGGTCTCTTAAAAGCACGTACATGGCCACCATTCCTTCTTAGGCT  447

Query  1166  AACTGCTATTCGCCCTGCTTATTTATTTTTTATTAAACTCAGAAACAGAGATAATAGTTT  1225
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  446   AACTGCTATTCGCCCTGCTTATTTATTTTTTATTAAACTCAGAAACAGAGATAATAGTTT  387

Query  1226  TGCACCCACTAAACTAGTGTAAATTTGGCATATATCTATAGCAGGTTCTCCAAAACCATG  1285
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  386   TGCACCCACTAAACTAGTGTAAATTTGGCATATATCTATAGCAGGTTCTCCAAAACCATG  327

Query  1286  TATTTCCTTTTGGAATAATTTATTCAACACGATAATCGCTTAAACGTATTCCCGATTGAA  1345
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  326   TATTTCCTTTTGGAATAATTTATTCAACACGATAATCGCTTAAACGTATTCCCGATTGAA  267

Query  1346  AAAGATTAACACATATTATTATTGCTATTATTAATACATCATTTTGGCATAGATAATTTC  1405
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  266   AAAGATTAACACATATTATTATTGCTATTATTAATACATCATTTTGGCATAGATAATTTC  207

Query  1406  CGCACTATATTACATATACAATGTTAGTAATTAATATGATTGTGGCAATACTTTACATCT  1465
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  206   CGCACTATATTACATATACAATGTTAGTAATTAATATGATTGTGGCAATACTTTACATCT  147

Query  1466  TAACCAGAAAATAGAAAAAGTATCTTGAATGCAGCAATCTTCACGTTTGCCAATG-CGCT  1524
             |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct  146   TAACCAGAAAATAGAAAAAGTATCTTGAATGCAGCAATCTCCACGTTTGCCAATGCCGCT  87

Query  1525  TTCGCGAAATCCAATAGCGGGCCAACTTTAAGCTTTACCCCACTCCTCCCAATTATGGGC  1584
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  86    TTCGCGAAATCCAATAGCGGGCCAACTTTAAGCTTTACCCCACTCCTCCCAATTATGGGC  27

Query  1585  ATCCTTTTTTGACATCCTTTCGCTAA  1610
             ||||||||||||||||||||||||||
Sbjct  26    ATCCTTTTTTGACATCCTTTCGCTAA  1


>gi|468518|emb|X64255.1|ARROLDNA Gene info A.rhizogenes genes rolA, rolB, rolC, rolD
Length=7427

 Score =  456 bits (230),  Expect = 2e-125
 Identities = 687/837 (82%), Gaps = 3/837 (0%)
 Strand=Plus/Minus

Query  1850  CTCACATCACAATGGATCCCAAATTGCTATTCCTTCCACGATTTCAACCAGTAGATCTCA  1909
             ||||||||||||||| |||   ||  |||||||||| ||| |||||||||  ||||||||
Sbjct  3407  CTCACATCACAATGGCTCCTCGATCACTATTCCTTCAACGCTTTCAACCACGAGATCTCA  3348

Query  1910  CTCCAGCATGGAGCCAGATAAACCTATTCGAGGGGATCCGATTTGCTTTTGCAATCTATA  1969
             |   ||| |||| |||| | ||| | ||||| | ||||| ||||||||||  ||||||||
Sbjct  3347  CAAAAGCCTGGAACCAGCTTAACTTGTTCGATGAGATCCAATTTGCTTTTTTAATCTATA  3288

Query  1970  GCCGTGACTATAGCAAACCCCTCCTGCATTTCCAGAAACGATGGGCTCTTGCAGTGCTAG  2029
             |||  | |||||||||| | ||| || ||||||||||| | ||||| |  |  ||||| |
Sbjct  3287  GCCAAGTCTATAGCAAAACTCTCATGGATTTCCAGAAAAGGTGGGCCCAAGGCGTGCTTG  3228

Query  2030  ATTTGAAGGAAAACTCTCCACCGATATATATACTTAAACAACTAGCTGAGCTCTTGAAGA  2089
             ||||| |||||||| |||| ||| |    |||||||||||||| ||  | ||| |||| |
Sbjct  3227  ATTTGGAGGAAAACGCTCCGCCGGTGGTCATACTTAAACAACTGGCCCATCTCCTGAAAA  3168

Query  2090  ACAAAGTCTGCTATCATCCTCCTATGTTTGTTAGTCAGCCGGATCTGGCTCGAGAAAACG  2149
             ||||||| || ||||| ||||| ||| ||||   ||| |||||||| ||  |||||||||
Sbjct  3167  ACAAAGTATGTTATCACCCTCCCATGCTTGTCGATCACCCGGATCTTGCCAGAGAAAACG  3108

Query  2150  ACCAACATGTATTTGTCTATCTTTCTCGCGAGAAGATGCAGAAAGTGCTGAAGGAACAAT  2209
             ||| |||||||||||||||||| ||||||||||||||||||||||| ||| ||||| |||
Sbjct  3107  ACCGACATGTATTTGTCTATCTATCTCGCGAGAAGATGCAGAAAGTACTGGAGGAAAAAT  3048

Query  2210  CCATTACATTTGGAATGGAGGCCGTGCTGGCGACAACGATTCAACCATATCGGAGCGAGC  2269
             |||| || |||||| ||||||||||||||||||| ||||| ||||| ||||| ||||| |
Sbjct  3047  CCATCACGTTTGGATTGGAGGCCGTGCTGGCGACCACGATGCAACCCTATCGTAGCGACC  2988

Query  2270  TCGCCCTCCAGGAGATGCTCCGTGTTCACAACCTTGCTTGGCCGCACAGCCGCACGGAGG  2329
             ||| ||||||||||||| |||||| ||||||| |||||||||||||| |||||  ||| |
Sbjct  2987  TCGTCCTCCAGGAGATGGTCCGTGCTCACAACATTGCTTGGCCGCACCGCCGCGTGGAAG  2928

Query  2330  AACCTGATTTAGAATGCTTCATCGCCATTTTCGCAAGTTCCTTGTTCATTCACTTGCTGG  2389
             |||||||| | ||| |||| ||||||||||| |||||| |||||||||||||| ||||||
Sbjct  2927  AACCTGATCTGGAAGGCTTTATCGCCATTTTTGCAAGTACCTTGTTCATTCACCTGCTGG  2868

Query  2390  AGTTAAAAGTGACCAACGTTTACGGGAGAGAGGTAGCTTGCACCTTCTTTCTGCGGCGAG  2449
             ||||||||||||| || || ||||| || |||||||| |||||||||||  |||||| ||
Sbjct  2867  AGTTAAAAGTGACAAATGTGTACGGCAGGGAGGTAGCCTGCACCTTCTTCGTGCGGCAAG  2808

Query  2450  GGACTGAAAACCGCCCCTATGATGTTGTAGCTTGCGGCACCACACAATTCACCAAAAATG  2509
             | |||| ||||||| ||||||| ||  | |||||||||| |||||| |||||||||||||
Sbjct  2807  GCACTGGAAACCGCTCCTATGACGTCATTGCTTGCGGCATCACACAGTTCACCAAAAATG  2748

Query  2510  CCCTCGGGATATCACGTCCGGCCGCCTCCTCACCGGAGCCAGACCTAACCCTGCGACTCT  2569
             |   || |||  |||| ||||| |   | ||||||||||||||||| |||||||| ||||
Sbjct  2747  CTGGCGTGATGCCACGACCGGCGGTACCGTCACCGGAGCCAGACCTCACCCTGCGGCTCT  2688

Query  2570  CGGGGCCTGATCAGGAAGGCGAGGAGGGCGTCATGAAGCCTGCTGCAGTAAACCTGAAGA  2629
             |||| ||  | ||| || | || ||||| |  ||||||||||||  |||||| |||||||
Sbjct  2687  CGGGACCCAACCAGAAACGTGAAGAGGGTGATATGAAGCCTGCTATAGTAAATCTGAAGA  2628

Query  2630  AAGAAGCCTAAAGCCGACTTGAACTCCCCCTGCAGGCAACCTTTATCTATGAGTTTG  2686
             ||||| |||   | ||||||||  | ||||||||||| ||||||| |||| ||||||
Sbjct  2627  AAGAAACCT--CGGCGACTTGAGGT-CCCCTGCAGGCCACCTTTAACTATAAGTTTG  2574


 Score =  270 bits (136),  Expect = 2e-69
 Identities = 298/352 (84%), Gaps = 0/352 (0%)
 Strand=Plus/Minus

Query  152   CAAACTTGCACTCGCCATGCCTCACCAACTCACCAGGTTCGAACCTAAGCTGGGTGCTGG  211
             |||| ||||| |||||||||||||||||| |||||||||||| ||| |||||| ||||||
Sbjct  5088  CAAATTTGCATTCGCCATGCCTCACCAACGCACCAGGTTCGAGCCTGAGCTGGTTGCTGG  5029

Query  212   CATAGAGGTCGAATGTCAGACACTTTCCCTTTGTCGAAGTTAGCTCCATCTGCTCATTCA  271
             |||| |||||||| |||||| ||||||||||||| |||||||||||||||||| ||| ||
Sbjct  5028  CATAAAGGTCGAAGGTCAGAGACTTTCCCTTTGTTGAAGTTAGCTCCATCTGCCCATCCA  4969

Query  272   GCTTGATGACACGCCCAGGGAAAGAAAATGCAGCGAAGTAGGCGCTCCGCATAGGATCCG  331
             |||||| ||    ||| |||| ||||| ||| ||||||||||||||||| |||  |||| 
Sbjct  4968  GCTTGACGAAGTACCCGGGGACAGAAAGTGCGGCGAAGTAGGCGCTCCGGATAACATCCT  4909

Query  332   CGTAACCGAAAAAACCTGATGCTTGCCTGAGCCCTCTATTGACCTCATCGAGAGTCACAT  391
             |||| || || || |||||||| ||||| ||||| ||    |||||| ||||| | ||||
Sbjct  4908  CGTATCCAAAGAATCCTGATGCCTGCCTAAGCCCCCTGCACACCTCACCGAGACTTACAT  4849

Query  392   CATGCTGGTACGGGGGAAGGTTGGTGAGGAGTGCGCCTTGCATCCAATTGTAAGGCAAGG  451
             | | ||||||||| ||||| ||||||| ||| ||||| ||| |  ||||||| ||||| |
Sbjct  4848  CTTTCTGGTACGGTGGAAGATTGGTGATGAGCGCGCCGTGCCTGGAATTGTAGGGCAAAG  4789

Query  452   ACCCTCCATAGAAGCAGAGCATCATCGTCGGGCAGTCGACGTAGAGGTACAG  503
             |||||||||| |||||  ||||||||||||||||||||||||||||||||||
Sbjct  4788  ACCCTCCATAAAAGCATCGCATCATCGTCGGGCAGTCGACGTAGAGGTACAG  4737


 Score = 81.8 bits (41),  Expect = 1e-12
 Identities = 87/101 (86%), Gaps = 1/101 (0%)
 Strand=Plus/Minus

Query  993   CTTTTTCCTTTAATAATGGGACGCACCCGCCTACCTTTATTTATGCTGCGGAAAGGCGCT  1052
             |||||||||||||| ||||  ||||| |||||||||||||||||| |||| |||||| ||
Sbjct  4266  CTTTTTCCTTTAATTATGGT-CGCACGCGCCTACCTTTATTTATGTTGCGAAAAGGCACT  4208

Query  1053  ACTTTGTCAAGCTAAACCCCACGTTAGGCCTGTCGGCACCA  1093
             ||||| |||| ||   | |||||||||||||||| ||||||
Sbjct  4207  ACTTTTTCAACCTGTGCACCACGTTAGGCCTGTCTGCACCA  4167


 Score = 63.9 bits (32),  Expect = 2e-07
 Identities = 53/60 (88%), Gaps = 0/60 (0%)
 Strand=Plus/Minus

Query  1733  GTGATTGTTGCCAAACTACCTCTGGCTTTCCCGACCAGAGACTGTGTCTGATTGGCGCCA  1792
             |||||| |||||| | | |||||||||||||||||| ||||||||| |||||||| ||||
Sbjct  3528  GTGATTATTGCCAGATTGCCTCTGGCTTTCCCGACCGGAGACTGTGCCTGATTGGTGCCA  3469


 Score = 48.1 bits (24),  Expect = 0.014
 Identities = 78/96 (81%), Gaps = 0/96 (0%)
 Strand=Plus/Minus

Query  529   TCTTCGTCAATATCCATCGATTGATTCTCACCCGGCTCGATCAAGGGTTTACGCTCATTT  588
             |||||||||||||||||||| ||   ||||||||||||  ||| |||  | ||||| |||
Sbjct  4711  TCTTCGTCAATATCCATCGACTGGCCCTCACCCGGCTCCGTCAGGGGGGTCCGCTCCTTT  4652

Query  589   GAGGCGTTCTTCATGTGTCTAGCTAGCTCATCGCTG  624
             |||||| |||  |||||| |   |||||||||||||
Sbjct  4651  GAGGCGCTCTGGATGTGTTTCTTTAGCTCATCGCTG  4616


 Score = 44.1 bits (22),  Expect = 0.22
 Identities = 40/46 (86%), Gaps = 0/46 (0%)
 Strand=Plus/Minus

Query  1522  GCTTTCGCGAAATCCAATAGCGGGCCAACTTTAAGCTTTACCCCAC  1567
             |||||| |||||||| |||   ||||||||||||||| ||||||||
Sbjct  3741  GCTTTCACGAAATCCTATATTCGGCCAACTTTAAGCTCTACCCCAC  3696


 Score = 40.1 bits (20),  Expect = 3.5
 Identities = 41/48 (85%), Gaps = 0/48 (0%)
 Strand=Plus/Minus

Query  653   AAAAGAGAGAACACAGGTCGTCTTCAGCCATGTTAACAAAGTAGGAAA  700
             ||||||||| ||| |||||   ||| ||||||||| ||||||||||||
Sbjct  4587  AAAAGAGAGCACATAGGTCAAATTCCGCCATGTTAGCAAAGTAGGAAA  4540


>gi|10567310|dbj|AP002086.1| Download subject sequence spanning the HSP Agrobacterium rhizogenes plasmid pRi1724 DNA, complete sequence
Length=217594

 Features in this part of subject sequence:
   riorf173
   riorf15

 Score =  448 bits (226),  Expect = 4e-123
 Identities = 686/837 (81%), Gaps = 3/837 (0%)
 Strand=Plus/Minus

Query  1850   CTCACATCACAATGGATCCCAAATTGCTATTCCTTCCACGATTTCAACCAGTAGATCTCA  1909
              ||||||||||||||| |||   ||  |||||||||| ||| |||||||||  ||||||||
Sbjct  19867  CTCACATCACAATGGCTCCTCGATCACTATTCCTTCAACGCTTTCAACCACGAGATCTCA  19808

Query  1910   CTCCAGCATGGAGCCAGATAAACCTATTCGAGGGGATCCGATTTGCTTTTGCAATCTATA  1969
              |   ||| |||| |||| | ||| | ||||| | ||||| ||||||||||  ||||||||
Sbjct  19807  CAAAAGCCTGGAACCAGCTTAACTTGTTCGATGAGATCCAATTTGCTTTTTTAATCTATA  19748

Query  1970   GCCGTGACTATAGCAAACCCCTCCTGCATTTCCAGAAACGATGGGCTCTTGCAGTGCTAG  2029
              |||  | |||||||||| | ||| || ||||||||||| | ||||| |  |  ||||| |
Sbjct  19747  GCCAAGTCTATAGCAAAACTCTCATGGATTTCCAGAAAAGGTGGGCCCAAGGCGTGCTTG  19688

Query  2030   ATTTGAAGGAAAACTCTCCACCGATATATATACTTAAACAACTAGCTGAGCTCTTGAAGA  2089
              ||||| |||||||| |||| ||| |    |||||||||||||| ||  | ||  |||| |
Sbjct  19687  ATTTGGAGGAAAACGCTCCGCCGGTGGTCATACTTAAACAACTGGCCCATCTTCTGAAAA  19628

Query  2090   ACAAAGTCTGCTATCATCCTCCTATGTTTGTTAGTCAGCCGGATCTGGCTCGAGAAAACG  2149
              ||||||| || ||||| ||||| ||| ||||   ||| |||||||| ||  |||||||||
Sbjct  19627  ACAAAGTATGTTATCACCCTCCCATGCTTGTCGATCACCCGGATCTTGCCAGAGAAAACG  19568

Query  2150   ACCAACATGTATTTGTCTATCTTTCTCGCGAGAAGATGCAGAAAGTGCTGAAGGAACAAT  2209
              ||| |||||||||||||||||| ||||||||||||||||||||||| ||| ||||| |||
Sbjct  19567  ACCGACATGTATTTGTCTATCTATCTCGCGAGAAGATGCAGAAAGTACTGGAGGAAAAAT  19508

Query  2210   CCATTACATTTGGAATGGAGGCCGTGCTGGCGACAACGATTCAACCATATCGGAGCGAGC  2269
              |||| || |||||| ||||||||||||||||||| ||||| ||||| ||||| ||||| |
Sbjct  19507  CCATCACGTTTGGATTGGAGGCCGTGCTGGCGACCACGATGCAACCCTATCGTAGCGACC  19448

Query  2270   TCGCCCTCCAGGAGATGCTCCGTGTTCACAACCTTGCTTGGCCGCACAGCCGCACGGAGG  2329
              ||| ||||||||||||| |||||| ||||||| |||||||||||||| |||||  ||| |
Sbjct  19447  TCGTCCTCCAGGAGATGGTCCGTGCTCACAACATTGCTTGGCCGCACCGCCGCGTGGAAG  19388

Query  2330   AACCTGATTTAGAATGCTTCATCGCCATTTTCGCAAGTTCCTTGTTCATTCACTTGCTGG  2389
              |||||||| | ||| |||| ||||||||||| |||||| |||||||||||||| ||||||
Sbjct  19387  AACCTGATCTGGAAGGCTTTATCGCCATTTTTGCAAGTACCTTGTTCATTCACCTGCTGG  19328

Query  2390   AGTTAAAAGTGACCAACGTTTACGGGAGAGAGGTAGCTTGCACCTTCTTTCTGCGGCGAG  2449
              ||||||||||||| || || ||||| || |||||||| |||||||||||  |||||| ||
Sbjct  19327  AGTTAAAAGTGACAAATGTGTACGGCAGGGAGGTAGCCTGCACCTTCTTCGTGCGGCAAG  19268

Query  2450   GGACTGAAAACCGCCCCTATGATGTTGTAGCTTGCGGCACCACACAATTCACCAAAAATG  2509
              | |||| ||||||| ||||||| ||  | |||||||||| |||||| |||||||||||||
Sbjct  19267  GCACTGGAAACCGCTCCTATGACGTCATTGCTTGCGGCATCACACAGTTCACCAAAAATG  19208

Query  2510   CCCTCGGGATATCACGTCCGGCCGCCTCCTCACCGGAGCCAGACCTAACCCTGCGACTCT  2569
              |   || |||  |||| ||||| |   | ||||||||||||||||| |||||||| ||||
Sbjct  19207  CTGGCGTGATGCCACGACCGGCGGTACCGTCACCGGAGCCAGACCTCACCCTGCGGCTCT  19148

Query  2570   CGGGGCCTGATCAGGAAGGCGAGGAGGGCGTCATGAAGCCTGCTGCAGTAAACCTGAAGA  2629
              |||| ||  | ||| || | || ||||| |  ||||||||||||  |||||| |||||||
Sbjct  19147  CGGGACCCAACCAGAAACGTGAAGAGGGTGATATGAAGCCTGCTATAGTAAATCTGAAGA  19088

Query  2630   AAGAAGCCTAAAGCCGACTTGAACTCCCCCTGCAGGCAACCTTTATCTATGAGTTTG  2686
              ||||| |||   | ||||||||  | ||||||||||| ||||||| |||| ||||||
Sbjct  19087  AAGAAACCT--CGGCGACTTGAGGT-CCCCTGCAGGCCACCTTTAACTATAAGTTTG  19034


 Features in this part of subject sequence:
   riorf173
   riorf16

 Score =  270 bits (136),  Expect = 2e-69
 Identities = 298/352 (84%), Gaps = 0/352 (0%)
 Strand=Plus/Minus

Query  152    CAAACTTGCACTCGCCATGCCTCACCAACTCACCAGGTTCGAACCTAAGCTGGGTGCTGG  211
              |||| ||||| |||||||||||||||||| |||||||||||| ||| |||||| ||||||
Sbjct  21547  CAAATTTGCATTCGCCATGCCTCACCAACGCACCAGGTTCGAGCCTGAGCTGGTTGCTGG  21488

Query  212    CATAGAGGTCGAATGTCAGACACTTTCCCTTTGTCGAAGTTAGCTCCATCTGCTCATTCA  271
              |||| |||||||| |||||| ||||||||||||| |||||||||||||||||| ||| ||
Sbjct  21487  CATAAAGGTCGAAGGTCAGAGACTTTCCCTTTGTTGAAGTTAGCTCCATCTGCCCATCCA  21428

Query  272    GCTTGATGACACGCCCAGGGAAAGAAAATGCAGCGAAGTAGGCGCTCCGCATAGGATCCG  331
              |||||| ||    ||| |||| ||||| ||| ||||||||||||||||| |||  |||| 
Sbjct  21427  GCTTGACGAAGTACCCGGGGACAGAAAGTGCGGCGAAGTAGGCGCTCCGGATAACATCCT  21368

Query  332    CGTAACCGAAAAAACCTGATGCTTGCCTGAGCCCTCTATTGACCTCATCGAGAGTCACAT  391
              |||| || || || |||||||| ||||| ||||| ||    |||||| ||||| | ||||
Sbjct  21367  CGTATCCAAAGAATCCTGATGCCTGCCTAAGCCCCCTGCACACCTCACCGAGACTTACAT  21308

Query  392    CATGCTGGTACGGGGGAAGGTTGGTGAGGAGTGCGCCTTGCATCCAATTGTAAGGCAAGG  451
              | | ||||||||| ||||| ||||||| ||| ||||| ||| |  ||||||| ||||| |
Sbjct  21307  CTTTCTGGTACGGTGGAAGATTGGTGATGAGCGCGCCGTGCCTGGAATTGTAGGGCAAAG  21248

Query  452    ACCCTCCATAGAAGCAGAGCATCATCGTCGGGCAGTCGACGTAGAGGTACAG  503
              |||||||||| |||||  ||||||||||||||||||||||||||||||||||
Sbjct  21247  ACCCTCCATAAAAGCATCGCATCATCGTCGGGCAGTCGACGTAGAGGTACAG  21196


 Features in this part of subject sequence:
   riorf173

 Score = 81.8 bits (41),  Expect = 1e-12
 Identities = 87/101 (86%), Gaps = 1/101 (0%)
 Strand=Plus/Minus

Query  993    CTTTTTCCTTTAATAATGGGACGCACCCGCCTACCTTTATTTATGCTGCGGAAAGGCGCT  1052
              |||||||||||||| ||||  ||||| |||||||||||||||||| |||| |||||| ||
Sbjct  20725  CTTTTTCCTTTAATTATGGT-CGCACGCGCCTACCTTTATTTATGTTGCGAAAAGGCACT  20667

Query  1053   ACTTTGTCAAGCTAAACCCCACGTTAGGCCTGTCGGCACCA  1093
              ||||| |||| ||   | |||||||||||||||| ||||||
Sbjct  20666  ACTTTTTCAACCTGTGCACCACGTTAGGCCTGTCTGCACCA  20626


 Features in this part of subject sequence:
   riorf173

 Score = 63.9 bits (32),  Expect = 2e-07
 Identities = 53/60 (88%), Gaps = 0/60 (0%)
 Strand=Plus/Minus

Query  1733   GTGATTGTTGCCAAACTACCTCTGGCTTTCCCGACCAGAGACTGTGTCTGATTGGCGCCA  1792
              |||||| |||||| | | |||||||||||||||||| ||||||||| |||||||| ||||
Sbjct  19988  GTGATTATTGCCAGATTGCCTCTGGCTTTCCCGACCGGAGACTGTGCCTGATTGGTGCCA  19929


 Features in this part of subject sequence:
   riorf173
   riorf16

 Score = 48.1 bits (24),  Expect = 0.014
 Identities = 78/96 (81%), Gaps = 0/96 (0%)
 Strand=Plus/Minus

Query  529    TCTTCGTCAATATCCATCGATTGATTCTCACCCGGCTCGATCAAGGGTTTACGCTCATTT  588
              |||||||||||||||||||| ||   ||||||||||||  ||| |||  | ||||| |||
Sbjct  21170  TCTTCGTCAATATCCATCGACTGGCCCTCACCCGGCTCCGTCAGGGGGGTCCGCTCCTTT  21111

Query  589    GAGGCGTTCTTCATGTGTCTAGCTAGCTCATCGCTG  624
              |||||| |||  |||||| |   |||||||||||||
Sbjct  21110  GAGGCGCTCTGGATGTGTTTCTTTAGCTCATCGCTG  21075


 Features in this part of subject sequence:
   riorf173

 Score = 44.1 bits (22),  Expect = 0.22
 Identities = 40/46 (86%), Gaps = 0/46 (0%)
 Strand=Plus/Minus

Query  1522   GCTTTCGCGAAATCCAATAGCGGGCCAACTTTAAGCTTTACCCCAC  1567
              |||||| |||||||| |||   ||||||||||||||| ||||||||
Sbjct  20201  GCTTTCACGAAATCCTATATTCGGCCAACTTTAAGCTCTACCCCAC  20156


 Features in this part of subject sequence:
   riorf173
   riorf16

 Score = 40.1 bits (20),  Expect = 3.5
 Identities = 41/48 (85%), Gaps = 0/48 (0%)
 Strand=Plus/Minus

Query  653    AAAAGAGAGAACACAGGTCGTCTTCAGCCATGTTAACAAAGTAGGAAA  700
              ||||||||| ||| |||||   ||| ||||||||| ||||||||||||
Sbjct  21046  AAAAGAGAGCACATAGGTCAAATTCCGCCATGTTAGCAAAGTAGGAAA  20999


>gi|2440224|dbj|AB006689.1| Gene infoDownload subject sequence spanning the HSP Agrobacterium rhizogenes plasmid pRi1724 rolA, rolB, rolC gene, 
partial and complete cds
Length=10844

 Score =  448 bits (226),  Expect = 4e-123
 Identities = 686/837 (81%), Gaps = 3/837 (0%)
 Strand=Plus/Minus

Query  1850  CTCACATCACAATGGATCCCAAATTGCTATTCCTTCCACGATTTCAACCAGTAGATCTCA  1909
             ||||||||||||||| |||   ||  |||||||||| ||| |||||||||  ||||||||
Sbjct  3532  CTCACATCACAATGGCTCCTCGATCACTATTCCTTCAACGCTTTCAACCACGAGATCTCA  3473

Query  1910  CTCCAGCATGGAGCCAGATAAACCTATTCGAGGGGATCCGATTTGCTTTTGCAATCTATA  1969
             |   ||| |||| |||| | ||| | ||||| | ||||| ||||||||||  ||||||||
Sbjct  3472  CAAAAGCCTGGAACCAGCTTAACTTGTTCGATGAGATCCAATTTGCTTTTTTAATCTATA  3413

Query  1970  GCCGTGACTATAGCAAACCCCTCCTGCATTTCCAGAAACGATGGGCTCTTGCAGTGCTAG  2029
             |||  | |||||||||| | ||| || ||||||||||| | ||||| |  |  ||||| |
Sbjct  3412  GCCAAGTCTATAGCAAAACTCTCATGGATTTCCAGAAAAGGTGGGCCCAAGGCGTGCTTG  3353

Query  2030  ATTTGAAGGAAAACTCTCCACCGATATATATACTTAAACAACTAGCTGAGCTCTTGAAGA  2089
             ||||| |||||||| |||| ||| |    |||||||||||||| ||  | ||  |||| |
Sbjct  3352  ATTTGGAGGAAAACGCTCCGCCGGTGGTCATACTTAAACAACTGGCCCATCTTCTGAAAA  3293

Query  2090  ACAAAGTCTGCTATCATCCTCCTATGTTTGTTAGTCAGCCGGATCTGGCTCGAGAAAACG  2149
             ||||||| || ||||| ||||| ||| ||||   ||| |||||||| ||  |||||||||
Sbjct  3292  ACAAAGTATGTTATCACCCTCCCATGCTTGTCGATCACCCGGATCTTGCCAGAGAAAACG  3233

Query  2150  ACCAACATGTATTTGTCTATCTTTCTCGCGAGAAGATGCAGAAAGTGCTGAAGGAACAAT  2209
             ||| |||||||||||||||||| ||||||||||||||||||||||| ||| ||||| |||
Sbjct  3232  ACCGACATGTATTTGTCTATCTATCTCGCGAGAAGATGCAGAAAGTACTGGAGGAAAAAT  3173

Query  2210  CCATTACATTTGGAATGGAGGCCGTGCTGGCGACAACGATTCAACCATATCGGAGCGAGC  2269
             |||| || |||||| ||||||||||||||||||| ||||| ||||| ||||| ||||| |
Sbjct  3172  CCATCACGTTTGGATTGGAGGCCGTGCTGGCGACCACGATGCAACCCTATCGTAGCGACC  3113

Query  2270  TCGCCCTCCAGGAGATGCTCCGTGTTCACAACCTTGCTTGGCCGCACAGCCGCACGGAGG  2329
             ||| ||||||||||||| |||||| ||||||| |||||||||||||| |||||  ||| |
Sbjct  3112  TCGTCCTCCAGGAGATGGTCCGTGCTCACAACATTGCTTGGCCGCACCGCCGCGTGGAAG  3053

Query  2330  AACCTGATTTAGAATGCTTCATCGCCATTTTCGCAAGTTCCTTGTTCATTCACTTGCTGG  2389
             |||||||| | ||| |||| ||||||||||| |||||| |||||||||||||| ||||||
Sbjct  3052  AACCTGATCTGGAAGGCTTTATCGCCATTTTTGCAAGTACCTTGTTCATTCACCTGCTGG  2993

Query  2390  AGTTAAAAGTGACCAACGTTTACGGGAGAGAGGTAGCTTGCACCTTCTTTCTGCGGCGAG  2449
             ||||||||||||| || || ||||| || |||||||| |||||||||||  |||||| ||
Sbjct  2992  AGTTAAAAGTGACAAATGTGTACGGCAGGGAGGTAGCCTGCACCTTCTTCGTGCGGCAAG  2933

Query  2450  GGACTGAAAACCGCCCCTATGATGTTGTAGCTTGCGGCACCACACAATTCACCAAAAATG  2509
             | |||| ||||||| ||||||| ||  | |||||||||| |||||| |||||||||||||
Sbjct  2932  GCACTGGAAACCGCTCCTATGACGTCATTGCTTGCGGCATCACACAGTTCACCAAAAATG  2873

Query  2510  CCCTCGGGATATCACGTCCGGCCGCCTCCTCACCGGAGCCAGACCTAACCCTGCGACTCT  2569
             |   || |||  |||| ||||| |   | ||||||||||||||||| |||||||| ||||
Sbjct  2872  CTGGCGTGATGCCACGACCGGCGGTACCGTCACCGGAGCCAGACCTCACCCTGCGGCTCT  2813

Query  2570  CGGGGCCTGATCAGGAAGGCGAGGAGGGCGTCATGAAGCCTGCTGCAGTAAACCTGAAGA  2629
             |||| ||  | ||| || | || ||||| |  ||||||||||||  |||||| |||||||
Sbjct  2812  CGGGACCCAACCAGAAACGTGAAGAGGGTGATATGAAGCCTGCTATAGTAAATCTGAAGA  2753

Query  2630  AAGAAGCCTAAAGCCGACTTGAACTCCCCCTGCAGGCAACCTTTATCTATGAGTTTG  2686
             ||||| |||   | ||||||||  | ||||||||||| ||||||| |||| ||||||
Sbjct  2752  AAGAAACCT--CGGCGACTTGAGGT-CCCCTGCAGGCCACCTTTAACTATAAGTTTG  2699


 Score =  270 bits (136),  Expect = 2e-69
 Identities = 298/352 (84%), Gaps = 0/352 (0%)
 Strand=Plus/Minus

Query  152   CAAACTTGCACTCGCCATGCCTCACCAACTCACCAGGTTCGAACCTAAGCTGGGTGCTGG  211
             |||| ||||| |||||||||||||||||| |||||||||||| ||| |||||| ||||||
Sbjct  5212  CAAATTTGCATTCGCCATGCCTCACCAACGCACCAGGTTCGAGCCTGAGCTGGTTGCTGG  5153

Query  212   CATAGAGGTCGAATGTCAGACACTTTCCCTTTGTCGAAGTTAGCTCCATCTGCTCATTCA  271
             |||| |||||||| |||||| ||||||||||||| |||||||||||||||||| ||| ||
Sbjct  5152  CATAAAGGTCGAAGGTCAGAGACTTTCCCTTTGTTGAAGTTAGCTCCATCTGCCCATCCA  5093

Query  272   GCTTGATGACACGCCCAGGGAAAGAAAATGCAGCGAAGTAGGCGCTCCGCATAGGATCCG  331
             |||||| ||    ||| |||| ||||| ||| ||||||||||||||||| |||  |||| 
Sbjct  5092  GCTTGACGAAGTACCCGGGGACAGAAAGTGCGGCGAAGTAGGCGCTCCGGATAACATCCT  5033

Query  332   CGTAACCGAAAAAACCTGATGCTTGCCTGAGCCCTCTATTGACCTCATCGAGAGTCACAT  391
             |||| || || || |||||||| ||||| ||||| ||    |||||| ||||| | ||||
Sbjct  5032  CGTATCCAAAGAATCCTGATGCCTGCCTAAGCCCCCTGCACACCTCACCGAGACTTACAT  4973

Query  392   CATGCTGGTACGGGGGAAGGTTGGTGAGGAGTGCGCCTTGCATCCAATTGTAAGGCAAGG  451
             | | ||||||||| ||||| ||||||| ||| ||||| ||| |  ||||||| ||||| |
Sbjct  4972  CTTTCTGGTACGGTGGAAGATTGGTGATGAGCGCGCCGTGCCTGGAATTGTAGGGCAAAG  4913

Query  452   ACCCTCCATAGAAGCAGAGCATCATCGTCGGGCAGTCGACGTAGAGGTACAG  503
             |||||||||| |||||  ||||||||||||||||||||||||||||||||||
Sbjct  4912  ACCCTCCATAAAAGCATCGCATCATCGTCGGGCAGTCGACGTAGAGGTACAG  4861


 Score = 81.8 bits (41),  Expect = 1e-12
 Identities = 87/101 (86%), Gaps = 1/101 (0%)
 Strand=Plus/Minus

Query  993   CTTTTTCCTTTAATAATGGGACGCACCCGCCTACCTTTATTTATGCTGCGGAAAGGCGCT  1052
             |||||||||||||| ||||  ||||| |||||||||||||||||| |||| |||||| ||
Sbjct  4390  CTTTTTCCTTTAATTATGGT-CGCACGCGCCTACCTTTATTTATGTTGCGAAAAGGCACT  4332

Query  1053  ACTTTGTCAAGCTAAACCCCACGTTAGGCCTGTCGGCACCA  1093
             ||||| |||| ||   | |||||||||||||||| ||||||
Sbjct  4331  ACTTTTTCAACCTGTGCACCACGTTAGGCCTGTCTGCACCA  4291


 Score = 63.9 bits (32),  Expect = 2e-07
 Identities = 53/60 (88%), Gaps = 0/60 (0%)
 Strand=Plus/Minus

Query  1733  GTGATTGTTGCCAAACTACCTCTGGCTTTCCCGACCAGAGACTGTGTCTGATTGGCGCCA  1792
             |||||| |||||| | | |||||||||||||||||| ||||||||| |||||||| ||||
Sbjct  3653  GTGATTATTGCCAGATTGCCTCTGGCTTTCCCGACCGGAGACTGTGCCTGATTGGTGCCA  3594


 Score = 48.1 bits (24),  Expect = 0.014
 Identities = 78/96 (81%), Gaps = 0/96 (0%)
 Strand=Plus/Minus

Query  529   TCTTCGTCAATATCCATCGATTGATTCTCACCCGGCTCGATCAAGGGTTTACGCTCATTT  588
             |||||||||||||||||||| ||   ||||||||||||  ||| |||  | ||||| |||
Sbjct  4835  TCTTCGTCAATATCCATCGACTGGCCCTCACCCGGCTCCGTCAGGGGGGTCCGCTCCTTT  4776

Query  589   GAGGCGTTCTTCATGTGTCTAGCTAGCTCATCGCTG  624
             |||||| |||  |||||| |   |||||||||||||
Sbjct  4775  GAGGCGCTCTGGATGTGTTTCTTTAGCTCATCGCTG  4740


 Score = 44.1 bits (22),  Expect = 0.22
 Identities = 40/46 (86%), Gaps = 0/46 (0%)
 Strand=Plus/Minus

Query  1522  GCTTTCGCGAAATCCAATAGCGGGCCAACTTTAAGCTTTACCCCAC  1567
             |||||| |||||||| |||   ||||||||||||||| ||||||||
Sbjct  3866  GCTTTCACGAAATCCTATATTCGGCCAACTTTAAGCTCTACCCCAC  3821


 Score = 40.1 bits (20),  Expect = 3.5
 Identities = 41/48 (85%), Gaps = 0/48 (0%)
 Strand=Plus/Minus

Query  653   AAAAGAGAGAACACAGGTCGTCTTCAGCCATGTTAACAAAGTAGGAAA  700
             ||||||||| ||| |||||   ||| ||||||||| ||||||||||||
Sbjct  4711  AAAAGAGAGCACATAGGTCAAATTCCGCCATGTTAGCAAAGTAGGAAA  4664


>gi|599608|emb|Z29365.1|ARCUCROL  A.rhizogenes (NCPPB2659) DNA from central region of the cucumopine 
T-DNA
Length=5149

 Score =  394 bits (199),  Expect = 5e-107
 Identities = 500/598 (83%), Gaps = 3/598 (0%)
 Strand=Plus/Minus

Query  2089  AACAAAGTCTGCTATCATCCTCCTATGTTTGTTAGTCAGCCGGATCTGGCTCGAGAAAAC  2148
             |||||||| || |||||||| || ||| ||||   ||| |||||| ||||  ||||||||
Sbjct  2574  AACAAAGTATGTTATCATCCCCCCATGCTTGTCGATCAACCGGATTTGGCCAGAGAAAAC  2515

Query  2149  GACCAACATGTATTTGTCTATCTTTCTCGCGAGAAGATGCAGAAAGTGCTGAAGGAACAA  2208
             |||| |||||||||||||||||| ||||||||||||||||||||||| ||| ||||| ||
Sbjct  2514  GACCGACATGTATTTGTCTATCTATCTCGCGAGAAGATGCAGAAAGTACTGGAGGAAAAA  2455

Query  2209  TCCATTACATTTGGAATGGAGGCCGTGCTGGCGACAACGATTCAACCATATCGGAGCGAG  2268
             ||||| || |||||| | ||||||||||||||||| ||||| ||||| ||||| ||||| 
Sbjct  2454  TCCATCACGTTTGGATTAGAGGCCGTGCTGGCGACCACGATGCAACCCTATCGTAGCGAC  2395

Query  2269  CTCGCCCTCCAGGAGATGCTCCGTGTTCACAACCTTGCTTGGCCGCACAGCCGCACGGAG  2328
             |||||||||||||||||| |||||| ||||||| |||||||||||||| |||||  ||| 
Sbjct  2394  CTCGCCCTCCAGGAGATGGTCCGTGCTCACAACATTGCTTGGCCGCACCGCCGCGTGGAA  2335

Query  2329  GAACCTGATTTAGAATGCTTCATCGCCATTTTCGCAAGTTCCTTGTTCATTCACTTGCTG  2388
             ||||||||| | ||| | || ||||||||||| |||||| |||||||||||||| |||||
Sbjct  2334  GAACCTGATCTGGAAGGTTTTATCGCCATTTTTGCAAGTACCTTGTTCATTCACCTGCTG  2275

Query  2389  GAGTTAAAAGTGACCAACGTTTACGGGAGAGAGGTAGCTTGCACCTTCTTTCTGCGGCGA  2448
             |||||||||||||| || || ||||| || |||||||| |||||||||||  |||||| |
Sbjct  2274  GAGTTAAAAGTGACAAATGTGTACGGCAGGGAGGTAGCCTGCACCTTCTTCGTGCGGCAA  2215

Query  2449  GGGACTGAAAACCGCCCCTATGATGTTGTAGCTTGCGGCACCACACAATTCACCAAAAAT  2508
             || |||| ||||||| ||||||| ||  | |||||||||| |||||| ||||||||||||
Sbjct  2214  GGCACTGGAAACCGCTCCTATGACGTCATTGCTTGCGGCATCACACAGTTCACCAAAAAT  2155

Query  2509  GCCCTCGGGATATCACGTCCGGCCGCCTCCTCACCGGAGCCAGACCTAACCCTGCGACTC  2568
             ||   || |||  |||| ||||| |   | ||||||||||||||||| |||||||| |||
Sbjct  2154  GCTGGCGTGATGCCACGACCGGCGGTACCGTCACCGGAGCCAGACCTCACCCTGCGGCTC  2095

Query  2569  TCGGGGCCTGATCAGGAAGGCGAGGAGGGCGTCATGAAGCCTGCTGCAGTAAACCTGAAG  2628
             ||||| ||  | ||| || | || ||||| |  ||||||||||||  |||||| ||||||
Sbjct  2094  TCGGGACCCAACCAGAAACGTGAAGAGGGTGATATGAAGCCTGCTATAGTAAATCTGAAG  2035

Query  2629  AAAGAAGCCTAAAGCCGACTTGAACTCCCCCTGCAGGCAACCTTTATCTATGAGTTTG  2686
             |||||| |||   | ||||||||  | ||||||||||| ||||||| |||| ||||||
Sbjct  2034  AAAGAAACCT--CGGCGACTTGAGGT-CCCCTGCAGGCCACCTTTAACTATAAGTTTG  1980


 Score =  246 bits (124),  Expect = 3e-62
 Identities = 295/352 (83%), Gaps = 0/352 (0%)
 Strand=Plus/Minus

Query  152   CAAACTTGCACTCGCCATGCCTCACCAACTCACCAGGTTCGAACCTAAGCTGGGTGCTGG  211
             |||| ||||| |||||||||||||||||| |||||||||||| ||| |||||| ||||||
Sbjct  4510  CAAATTTGCATTCGCCATGCCTCACCAACGCACCAGGTTCGAGCCTGAGCTGGTTGCTGG  4451

Query  212   CATAGAGGTCGAATGTCAGACACTTTCCCTTTGTCGAAGTTAGCTCCATCTGCTCATTCA  271
             |||| |||||||| |||||| ||||||||||||| |||||||| ||||||||| ||| ||
Sbjct  4450  CATAAAGGTCGAAGGTCAGAGACTTTCCCTTTGTTGAAGTTAGTTCCATCTGCCCATCCA  4391

Query  272   GCTTGATGACACGCCCAGGGAAAGAAAATGCAGCGAAGTAGGCGCTCCGCATAGGATCCG  331
             |||||| ||    ||| |||| ||||| ||| ||||||||||||||||| |||  |||| 
Sbjct  4390  GCTTGACGAAGTACCCGGGGACAGAAAGTGCGGCGAAGTAGGCGCTCCGGATAACATCCT  4331

Query  332   CGTAACCGAAAAAACCTGATGCTTGCCTGAGCCCTCTATTGACCTCATCGAGAGTCACAT  391
             |||| || || || |||||||| ||||| ||||| ||    |||||| ||||| | ||||
Sbjct  4330  CGTATCCAAAGAATCCTGATGCCTGCCTAAGCCCCCTGCACACCTCACCGAGACTTACAT  4271

Query  392   CATGCTGGTACGGGGGAAGGTTGGTGAGGAGTGCGCCTTGCATCCAATTGTAAGGCAAGG  451
             | | |||||| || ||||| ||||||| ||| ||||| ||| |  ||||||| ||||| |
Sbjct  4270  CTTTCTGGTATGGTGGAAGATTGGTGATGAGCGCGCCGTGCGTGGAATTGTAGGGCAAAG  4211

Query  452   ACCCTCCATAGAAGCAGAGCATCATCGTCGGGCAGTCGACGTAGAGGTACAG  503
             |||||||||| |||||  |||||||||||||||| |||||||||||||||||
Sbjct  4210  ACCCTCCATAAAAGCATCGCATCATCGTCGGGCAATCGACGTAGAGGTACAG  4159


 Score = 89.7 bits (45),  Expect = 4e-15
 Identities = 88/101 (87%), Gaps = 1/101 (0%)
 Strand=Plus/Minus

Query  993   CTTTTTCCTTTAATAATGGGACGCACCCGCCTACCTTTATTTATGCTGCGGAAAGGCGCT  1052
             |||||||||||||| ||||  ||||| ||||||||||||||||||||||| |||||| ||
Sbjct  3688  CTTTTTCCTTTAATTATGGT-CGCACGCGCCTACCTTTATTTATGCTGCGAAAAGGCACT  3630

Query  1053  ACTTTGTCAAGCTAAACCCCACGTTAGGCCTGTCGGCACCA  1093
             ||||| |||| ||   | |||||||||||||||| ||||||
Sbjct  3629  ACTTTTTCAACCTGTGCACCACGTTAGGCCTGTCTGCACCA  3589


 Score = 60.0 bits (30),  Expect = 4e-06
 Identities = 72/86 (83%), Gaps = 0/86 (0%)
 Strand=Plus/Minus

Query  1733  GTGATTGTTGCCAAACTACCTCTGGCTTTCCCGACCAGAGACTGTGTCTGATTGGCGCCA  1792
             |||||| |||||| | | |||||||||||||||||| || |||||| |||||||  ||||
Sbjct  2934  GTGATTATTGCCAGATTGCCTCTGGCTTTCCCGACCGGAAACTGTGGCTGATTGATGCCA  2875

Query  1793  GTTTCCGACGCCGTATTTTAAATGGC  1818
              || ||| || |||| ||||||||||
Sbjct  2874  CTTGCCGGCGGCGTACTTTAAATGGC  2849


 Score = 52.0 bits (26),  Expect = 0.001
 Identities = 125/158 (79%), Gaps = 0/158 (0%)
 Strand=Plus/Minus

Query  1850  CTCACATCACAATGGATCCCAAATTGCTATTCCTTCCACGATTTCAACCAGTAGATCTCA  1909
             ||||||||||||||  |||   ||| |||||||||| ||| |||||||||  ||||||||
Sbjct  2813  CTCACATCACAATGCCTCCTCGATTACTATTCCTTCAACGCTTTCAACCACGAGATCTCA  2754

Query  1910  CTCCAGCATGGAGCCAGATAAACCTATTCGAGGGGATCCGATTTGCTTTTGCAATCTATA  1969
             |   ||| |||| |||| | ||| | ||| | | ||||| |||||| |||  ||||||||
Sbjct  2753  CAAAAGCCTGGAACCAGCTTAACTTGTTCAATGAGATCCAATTTGCATTTTTAATCTATA  2694

Query  1970  GCCGTGACTATAGCAAACCCCTCCTGCATTTCCAGAAA  2007
             |||  | |||||||||| | ||| || |||||||||||
Sbjct  2693  GCCAAGTCTATAGCAAAACTCTCATGGATTTCCAGAAA  2656


 Score = 44.1 bits (22),  Expect = 0.22
 Identities = 43/50 (86%), Gaps = 0/50 (0%)
 Strand=Plus/Minus

Query  653   AAAAGAGAGAACACAGGTCGTCTTCAGCCATGTTAACAAAGTAGGAAACA  702
             ||||||||| ||| |||||   ||| ||||||||| ||||||||||||||
Sbjct  4009  AAAAGAGAGCACATAGGTCAAATTCCGCCATGTTAGCAAAGTAGGAAACA  3960


 Score = 42.1 bits (21),  Expect = 0.89
 Identities = 45/53 (84%), Gaps = 0/53 (0%)
 Strand=Plus/Minus

Query  1522  GCTTTCGCGAAATCCAATAGCGGGCCAACTTTAAGCTTTACCCCACTCCTCCC  1574
             |||||| ||||| ||||||   ||| ||||||||||| |||||||| ||||||
Sbjct  3147  GCTTTCACGAAAGCCAATATTCGGCAAACTTTAAGCTCTACCCCACCCCTCCC  3095


 Score = 40.1 bits (20),  Expect = 3.5
 Identities = 77/96 (80%), Gaps = 0/96 (0%)
 Strand=Plus/Minus

Query  529   TCTTCGTCAATATCCATCGATTGATTCTCACCCGGCTCGATCAAGGGTTTACGCTCATTT  588
             |||||||||| ||||||||| ||   ||||||||||||  ||| |||  | ||||| |||
Sbjct  4133  TCTTCGTCAACATCCATCGACTGGCCCTCACCCGGCTCCGTCAGGGGGGTCCGCTCCTTT  4074

Query  589   GAGGCGTTCTTCATGTGTCTAGCTAGCTCATCGCTG  624
             |||||| |||  |||||| |   |||||||||||||
Sbjct  4073  GAGGCGCTCTGGATGTGTTTCTTTAGCTCATCGCTG  4038


>gi|6706117|emb|AJ271050.1|ARH271050 Download subject sequence spanning the HSP Agrobacterium rhizogenes plasmid pRi2659 T-DNA sequence, ORF2, 
ORF3, ORF4, ORF8, ORF10, ORF11, ORF12, ORF13, ORF13a, ORF14 
and cus gene
Length=16110

 Score =  394 bits (199),  Expect = 5e-107
 Identities = 500/598 (83%), Gaps = 3/598 (0%)
 Strand=Plus/Minus

Query  2089  AACAAAGTCTGCTATCATCCTCCTATGTTTGTTAGTCAGCCGGATCTGGCTCGAGAAAAC  2148
             |||||||| || |||||||| || ||| ||||   ||| |||||| ||||  ||||||||
Sbjct  8835  AACAAAGTATGTTATCATCCCCCCATGCTTGTCGATCAACCGGATTTGGCCAGAGAAAAC  8776

Query  2149  GACCAACATGTATTTGTCTATCTTTCTCGCGAGAAGATGCAGAAAGTGCTGAAGGAACAA  2208
             |||| |||||||||||||||||| ||||||||||||||||||||||| ||| ||||| ||
Sbjct  8775  GACCGACATGTATTTGTCTATCTATCTCGCGAGAAGATGCAGAAAGTACTGGAGGAAAAA  8716

Query  2209  TCCATTACATTTGGAATGGAGGCCGTGCTGGCGACAACGATTCAACCATATCGGAGCGAG  2268
             ||||| || |||||| | ||||||||||||||||| ||||| ||||| ||||| ||||| 
Sbjct  8715  TCCATCACGTTTGGATTAGAGGCCGTGCTGGCGACCACGATGCAACCCTATCGTAGCGAC  8656

Query  2269  CTCGCCCTCCAGGAGATGCTCCGTGTTCACAACCTTGCTTGGCCGCACAGCCGCACGGAG  2328
             |||||||||||||||||| |||||| ||||||| |||||||||||||| |||||  ||| 
Sbjct  8655  CTCGCCCTCCAGGAGATGGTCCGTGCTCACAACATTGCTTGGCCGCACCGCCGCGTGGAA  8596

Query  2329  GAACCTGATTTAGAATGCTTCATCGCCATTTTCGCAAGTTCCTTGTTCATTCACTTGCTG  2388
             ||||||||| | ||| | || ||||||||||| |||||| |||||||||||||| |||||
Sbjct  8595  GAACCTGATCTGGAAGGTTTTATCGCCATTTTTGCAAGTACCTTGTTCATTCACCTGCTG  8536

Query  2389  GAGTTAAAAGTGACCAACGTTTACGGGAGAGAGGTAGCTTGCACCTTCTTTCTGCGGCGA  2448
             |||||||||||||| || || ||||| || |||||||| |||||||||||  |||||| |
Sbjct  8535  GAGTTAAAAGTGACAAATGTGTACGGCAGGGAGGTAGCCTGCACCTTCTTCGTGCGGCAA  8476

Query  2449  GGGACTGAAAACCGCCCCTATGATGTTGTAGCTTGCGGCACCACACAATTCACCAAAAAT  2508
             || |||| ||||||| ||||||| ||  | |||||||||| |||||| ||||||||||||
Sbjct  8475  GGCACTGGAAACCGCTCCTATGACGTCATTGCTTGCGGCATCACACAGTTCACCAAAAAT  8416

Query  2509  GCCCTCGGGATATCACGTCCGGCCGCCTCCTCACCGGAGCCAGACCTAACCCTGCGACTC  2568
             ||   || |||  |||| ||||| |   | ||||||||||||||||| |||||||| |||
Sbjct  8415  GCTGGCGTGATGCCACGACCGGCGGTACCGTCACCGGAGCCAGACCTCACCCTGCGGCTC  8356

Query  2569  TCGGGGCCTGATCAGGAAGGCGAGGAGGGCGTCATGAAGCCTGCTGCAGTAAACCTGAAG  2628
             ||||| ||  | ||| || | || ||||| |  ||||||||||||  |||||| ||||||
Sbjct  8355  TCGGGACCCAACCAGAAACGTGAAGAGGGTGATATGAAGCCTGCTATAGTAAATCTGAAG  8296

Query  2629  AAAGAAGCCTAAAGCCGACTTGAACTCCCCCTGCAGGCAACCTTTATCTATGAGTTTG  2686
             |||||| |||   | ||||||||  | ||||||||||| ||||||| |||| ||||||
Sbjct  8295  AAAGAAACCT--CGGCGACTTGAGGT-CCCCTGCAGGCCACCTTTAACTATAAGTTTG  8241


 Score =  246 bits (124),  Expect = 3e-62
 Identities = 295/352 (83%), Gaps = 0/352 (0%)
 Strand=Plus/Minus

Query  152    CAAACTTGCACTCGCCATGCCTCACCAACTCACCAGGTTCGAACCTAAGCTGGGTGCTGG  211
              |||| ||||| |||||||||||||||||| |||||||||||| ||| |||||| ||||||
Sbjct  10771  CAAATTTGCATTCGCCATGCCTCACCAACGCACCAGGTTCGAGCCTGAGCTGGTTGCTGG  10712

Query  212    CATAGAGGTCGAATGTCAGACACTTTCCCTTTGTCGAAGTTAGCTCCATCTGCTCATTCA  271
              |||| |||||||| |||||| ||||||||||||| |||||||| ||||||||| ||| ||
Sbjct  10711  CATAAAGGTCGAAGGTCAGAGACTTTCCCTTTGTTGAAGTTAGTTCCATCTGCCCATCCA  10652

Query  272    GCTTGATGACACGCCCAGGGAAAGAAAATGCAGCGAAGTAGGCGCTCCGCATAGGATCCG  331
              |||||| ||    ||| |||| ||||| ||| ||||||||||||||||| |||  |||| 
Sbjct  10651  GCTTGACGAAGTACCCGGGGACAGAAAGTGCGGCGAAGTAGGCGCTCCGGATAACATCCT  10592

Query  332    CGTAACCGAAAAAACCTGATGCTTGCCTGAGCCCTCTATTGACCTCATCGAGAGTCACAT  391
              |||| || || || |||||||| ||||| ||||| ||    |||||| ||||| | ||||
Sbjct  10591  CGTATCCAAAGAATCCTGATGCCTGCCTAAGCCCCCTGCACACCTCACCGAGACTTACAT  10532

Query  392    CATGCTGGTACGGGGGAAGGTTGGTGAGGAGTGCGCCTTGCATCCAATTGTAAGGCAAGG  451
              | | |||||| || ||||| ||||||| ||| ||||| ||| |  ||||||| ||||| |
Sbjct  10531  CTTTCTGGTATGGTGGAAGATTGGTGATGAGCGCGCCGTGCGTGGAATTGTAGGGCAAAG  10472

Query  452    ACCCTCCATAGAAGCAGAGCATCATCGTCGGGCAGTCGACGTAGAGGTACAG  503
              |||||||||| |||||  |||||||||||||||| |||||||||||||||||
Sbjct  10471  ACCCTCCATAAAAGCATCGCATCATCGTCGGGCAATCGACGTAGAGGTACAG  10420


 Score = 89.7 bits (45),  Expect = 4e-15
 Identities = 88/101 (87%), Gaps = 1/101 (0%)
 Strand=Plus/Minus

Query  993   CTTTTTCCTTTAATAATGGGACGCACCCGCCTACCTTTATTTATGCTGCGGAAAGGCGCT  1052
             |||||||||||||| ||||  ||||| ||||||||||||||||||||||| |||||| ||
Sbjct  9949  CTTTTTCCTTTAATTATGGT-CGCACGCGCCTACCTTTATTTATGCTGCGAAAAGGCACT  9891

Query  1053  ACTTTGTCAAGCTAAACCCCACGTTAGGCCTGTCGGCACCA  1093
             ||||| |||| ||   | |||||||||||||||| ||||||
Sbjct  9890  ACTTTTTCAACCTGTGCACCACGTTAGGCCTGTCTGCACCA  9850


 Score = 60.0 bits (30),  Expect = 4e-06
 Identities = 72/86 (83%), Gaps = 0/86 (0%)
 Strand=Plus/Minus

Query  1733  GTGATTGTTGCCAAACTACCTCTGGCTTTCCCGACCAGAGACTGTGTCTGATTGGCGCCA  1792
             |||||| |||||| | | |||||||||||||||||| || |||||| |||||||  ||||
Sbjct  9195  GTGATTATTGCCAGATTGCCTCTGGCTTTCCCGACCGGAAACTGTGGCTGATTGATGCCA  9136

Query  1793  GTTTCCGACGCCGTATTTTAAATGGC  1818
              || ||| || |||| ||||||||||
Sbjct  9135  CTTGCCGGCGGCGTACTTTAAATGGC  9110


 Score = 52.0 bits (26),  Expect = 0.001
 Identities = 125/158 (79%), Gaps = 0/158 (0%)
 Strand=Plus/Minus

Query  1850  CTCACATCACAATGGATCCCAAATTGCTATTCCTTCCACGATTTCAACCAGTAGATCTCA  1909
             ||||||||||||||  |||   ||| |||||||||| ||| |||||||||  ||||||||
Sbjct  9074  CTCACATCACAATGCCTCCTCGATTACTATTCCTTCAACGCTTTCAACCACGAGATCTCA  9015

Query  1910  CTCCAGCATGGAGCCAGATAAACCTATTCGAGGGGATCCGATTTGCTTTTGCAATCTATA  1969
             |   ||| |||| |||| | ||| | ||| | | ||||| |||||| |||  ||||||||
Sbjct  9014  CAAAAGCCTGGAACCAGCTTAACTTGTTCAATGAGATCCAATTTGCATTTTTAATCTATA  8955

Query  1970  GCCGTGACTATAGCAAACCCCTCCTGCATTTCCAGAAA  2007
             |||  | |||||||||| | ||| || |||||||||||
Sbjct  8954  GCCAAGTCTATAGCAAAACTCTCATGGATTTCCAGAAA  8917


 Score = 44.1 bits (22),  Expect = 0.22
 Identities = 43/50 (86%), Gaps = 0/50 (0%)
 Strand=Plus/Minus

Query  653    AAAAGAGAGAACACAGGTCGTCTTCAGCCATGTTAACAAAGTAGGAAACA  702
              ||||||||| ||| |||||   ||| ||||||||| ||||||||||||||
Sbjct  10270  AAAAGAGAGCACATAGGTCAAATTCCGCCATGTTAGCAAAGTAGGAAACA  10221


 Score = 42.1 bits (21),  Expect = 0.89
 Identities = 45/53 (84%), Gaps = 0/53 (0%)
 Strand=Plus/Minus

Query  1522  GCTTTCGCGAAATCCAATAGCGGGCCAACTTTAAGCTTTACCCCACTCCTCCC  1574
             |||||| ||||| ||||||   ||| ||||||||||| |||||||| ||||||
Sbjct  9408  GCTTTCACGAAAGCCAATATTCGGCAAACTTTAAGCTCTACCCCACCCCTCCC  9356


 Score = 40.1 bits (20),  Expect = 3.5
 Identities = 77/96 (80%), Gaps = 0/96 (0%)
 Strand=Plus/Minus

Query  529    TCTTCGTCAATATCCATCGATTGATTCTCACCCGGCTCGATCAAGGGTTTACGCTCATTT  588
              |||||||||| ||||||||| ||   ||||||||||||  ||| |||  | ||||| |||
Sbjct  10394  TCTTCGTCAACATCCATCGACTGGCCCTCACCCGGCTCCGTCAGGGGGGTCCGCTCCTTT  10335

Query  589    GAGGCGTTCTTCATGTGTCTAGCTAGCTCATCGCTG  624
              |||||| |||  |||||| |   |||||||||||||
Sbjct  10334  GAGGCGCTCTGGATGTGTTTCTTTAGCTCATCGCTG  10299


>gi|142245|gb|M60490.1|ATUORF Download subject sequence spanning the HSP Agrobacterium rhizogenes ORFs 10, 11, 12, 13, 13a, 14, mas1` 
and mas2` genes, complete cds
Length=12733

 Score =  194 bits (98),  Expect = 1e-46
 Identities = 317/390 (81%), Gaps = 0/390 (0%)
 Strand=Plus/Minus

Query  2098  TGCTATCATCCTCCTATGTTTGTTAGTCAGCCGGATCTGGCTCGAGAAAACGACCAACAT  2157
             |||||||| | ||| |||||||| || || |||||| | || ||||| |  || ||||||
Sbjct  3409  TGCTATCACCGTCCCATGTTTGTCAGCCAACCGGATTTAGCCCGAGAGAGGGAGCAACAT  3350

Query  2158  GTATTTGTCTATCTTTCTCGCGAGAAGATGCAGAAAGTGCTGAAGGAACAATCCATTACA  2217
             |||||||| |||||||||||||| || |||||||||||||||| ||||||||| ||||| 
Sbjct  3349  GTATTTGTTTATCTTTCTCGCGAAAAAATGCAGAAAGTGCTGAGGGAACAATCGATTACG  3290

Query  2218  TTTGGAATGGAGGCCGTGCTGGCGACAACGATTCAACCATATCGGAGCGAGCTCGCCCTC  2277
             |||||||||||||||||  | || || ||||||||||| |||||  |||| ||  |  ||
Sbjct  3289  TTTGGAATGGAGGCCGTCGTAGCAACGACGATTCAACCCTATCGTTGCGACCTTTCGGTC  3230

Query  2278  CAGGAGATGCTCCGTGTTCACAACCTTGCTTGGCCGCACAGCCGCACGGAGGAACCTGAT  2337
              |||   |||||| || |||||||||||||||||||| | | |||| ||   || |||||
Sbjct  3229  AAGGCACTGCTCCATGCTCACAACCTTGCTTGGCCGCTCCGGCGCATGGTAAAATCTGAT  3170

Query  2338  TTAGAATGCTTCATCGCCATTTTCGCAAGTTCCTTGTTCATTCACTTGCTGGAGTTAAAA  2397
              | ||||||||||| || ||||| |||||| |||| ||| | |||||||| |||  ||||
Sbjct  3169  CTGGAATGCTTCATTGCTATTTTTGCAAGTACCTTATTCGTCCACTTGCTTGAGGCAAAA  3110

Query  2398  GTGACCAACGTTTACGGGAGAGAGGTAGCTTGCACCTTCTTTCTGCGGCGAGGGACTGAA  2457
              |||||||| |||| |||||||||| | ||||| | |||||| |||||| ||| ||||| 
Sbjct  3109  TTGACCAACCTTTATGGGAGAGAGGCACCTTGCGCGTTCTTTGTGCGGCTAGGCACTGAG  3050

Query  2458  AACCGCCCCTATGATGTTGTAGCTTGCGGC  2487
             ||||||| |||||| ||| |||| ||||||
Sbjct  3049  AACCGCCGCTATGACGTTATAGCCTGCGGC  3020


 Score =  137 bits (69),  Expect = 2e-29
 Identities = 213/261 (81%), Gaps = 0/261 (0%)
 Strand=Plus/Minus

Query  243   TGTCGAAGTTAGCTCCATCTGCTCATTCAGCTTGATGACACGCCCAGGGAAAGAAAATGC  302
             ||||||||| |||  || |||||||| |||||||  |||  | |||||||||  || |||
Sbjct  5180  TGTCGAAGTGAGCCTCAACTGCTCATCCAGCTTGGCGACGTGGCCAGGGAAACTAAGTGC  5121

Query  303   AGCGAAGTAGGCGCTCCGCATAGGATCCGCGTAACCGAAAAAACCTGATGCTTGCCTGAG  362
              ||||||||||||||||| ||||||||| |||| ||||  ||||||||||| | ||| ||
Sbjct  5120  CGCGAAGTAGGCGCTCCGGATAGGATCCTCGTACCCGACGAAACCTGATGCCTCCCTAAG  5061

Query  363   CCCTCTATTGACCTCATCGAGAGTCACATCATGCTGGTACGGGGGAAGGTTGGTGAGGAG  422
             ||| ||||| || |||| || | | ||||  | ||||||||| || || |||||||||||
Sbjct  5060  CCCCCTATTCACTTCATTGAAACTTACATTCTTCTGGTACGGCGGCAGATTGGTGAGGAG  5001

Query  423   TGCGCCTTGCATCCAATTGTAAGGCAAGGACCCTCCATAGAAGCAGAGCATCATCGTCGG  482
              || || ||| || ||||||| |||||  ||||||||||||||||  |||||||||| ||
Sbjct  5000  CGCTCCATGCGTCGAATTGTAGGGCAACCACCCTCCATAGAAGCATTGCATCATCGTTGG  4941

Query  483   GCAGTCGACGTAGAGGTACAG  503
             |||||| ||||||||| ||||
Sbjct  4940  GCAGTCAACGTAGAGGAACAG  4920


 Score = 79.8 bits (40),  Expect = 4e-12
 Identities = 72/80 (90%), Gaps = 2/80 (2%)
 Strand=Plus/Minus

Query  1016  CACCCGCCTACCTTTATTTATGCTGCGGAAAGGCGCTAC-TTTGTCAAGCTAAACCCCAC  1074
             |||||||||||||||||||||||||| ||||| ||| || ||| |||| || | ||||||
Sbjct  4424  CACCCGCCTACCTTTATTTATGCTGC-GAAAGACGCCACTTTTTTCAACCTGAGCCCCAC  4366

Query  1075  GTTAGGCCTGTCGGCACCAA  1094
             ||||||||||||||||||||
Sbjct  4365  GTTAGGCCTGTCGGCACCAA  4346


 Score = 71.9 bits (36),  Expect = 1e-09
 Identities = 69/79 (87%), Gaps = 2/79 (2%)
 Strand=Plus/Minus

Query  653   AAAAGAGAGAACACAGGTCGTCTTCAGCCATGTTAACAAAGTAGGAAACAG--GTTGCTT  710
             ||||||||| |||||||||  ||||||||||||||  ||||| ||||||||  || ||||
Sbjct  4770  AAAAGAGAGCACACAGGTCAACTTCAGCCATGTTACAAAAGTGGGAAACAGAAGTGGCTT  4711

Query  711   GTACCCATAACTCGAAGCA  729
             ||||||||||||| |||||
Sbjct  4710  GTACCCATAACTCAAAGCA  4692


 Score = 63.9 bits (32),  Expect = 2e-07
 Identities = 44/48 (91%), Gaps = 0/48 (0%)
 Strand=Plus/Minus

Query  1740  TTGCCAAACTACCTCTGGCTTTCCCGACCAGAGACTGTGTCTGATTGG  1787
             ||||||||||  |||| |||||||||||||||||||||| ||||||||
Sbjct  3753  TTGCCAAACTGACTCTTGCTTTCCCGACCAGAGACTGTGGCTGATTGG  3706


 Score = 50.1 bits (25),  Expect = 0.004
 Identities = 28/29 (96%), Gaps = 0/29 (0%)
 Strand=Plus/Minus

Query  2660  TGCAGGCAACCTTTATCTATGAGTTTGTC  2688
             ||||||| |||||||||||||||||||||
Sbjct  2865  TGCAGGCCACCTTTATCTATGAGTTTGTC  2837


>gi|38983|emb|X12579.1|ARROLA  Agrobacterium rhizogenes Ri plasmid rolA gene
Length=720

 Score = 60.0 bits (30),  Expect = 4e-06
 Identities = 30/30 (100%), Gaps = 0/30 (0%)
 Strand=Plus/Minus

Query  2920  TACATTTGACATAAAACATTTTCACGACAT  2949
             ||||||||||||||||||||||||||||||
Sbjct  720   TACATTTGACATAAAACATTTTCACGACAT  691


>gi|452715|emb|X77327.1|AVIAAM  A.vitis iaaM, ipt, nos, 6b protein and 3' protein genes
Length=6482

 Score = 44.1 bits (22),  Expect = 0.22
 Identities = 25/26 (96%), Gaps = 0/26 (0%)
 Strand=Plus/Minus

Query  1353  AACACATATTATTATTGCTATTATTA  1378
             |||||||||||||||| |||||||||
Sbjct  2244  AACACATATTATTATTACTATTATTA  2219


>gi|57546753|dbj|BA000030.2| Download subject sequence spanning the HSP Streptomyces avermitilis MA-4680 genomic DNA, complete genome
Length=9025608

 Features flanking this part of subject sequence:
   147 bp at 5' side: putative replicative DNA helicase
   283 bp at 3' side: putative DNA-damage-inducible protein F

 Score = 44.1 bits (22),  Expect = 0.22
 Identities = 22/22 (100%), Gaps = 0/22 (0%)
 Strand=Plus/Plus

Query  1071     CCACGTTAGGCCTGTCGGCACC  1092
                ||||||||||||||||||||||
Sbjct  5251610  CCACGTTAGGCCTGTCGGCACC  5251631


>gi|510732|emb|X74123.1|ATPTIDNA  A.tumefaciens plasmid Ti DNA for 6b gene, 696 gene, nos gene, 
and tmr gene (partial)
Length=4679

 Score = 44.1 bits (22),  Expect = 0.22
 Identities = 25/26 (96%), Gaps = 0/26 (0%)
 Strand=Plus/Minus

Query  1353  AACACATATTATTATTGCTATTATTA  1378
             |||||||||||||||| |||||||||
Sbjct  629   AACACATATTATTATTACTATTATTA  604


>gi|5869539|dbj|AB032122.1|  Agrobacterium tumefaciens plasmid pTiAKE10 iaaM, ipt, 6b genes 
for tryptophan monooxygenase, isopentenyl transferase, 6b, 
partial and complete cds
Length=2724

 Score = 44.1 bits (22),  Expect = 0.22
 Identities = 25/26 (96%), Gaps = 0/26 (0%)
 Strand=Plus/Minus

Query  1353  AACACATATTATTATTGCTATTATTA  1378
             |||||||||||||||| |||||||||
Sbjct  2242  AACACATATTATTATTACTATTATTA  2217


>gi|9656679|gb|AE004286.1| Gene infoDownload subject sequence spanning the HSP Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 
194 of 251 of the complete chromosome
Length=10185

 Score = 42.1 bits (21),  Expect = 0.89
 Identities = 24/25 (96%), Gaps = 0/25 (0%)
 Strand=Plus/Minus

Query  1322  CGCTTAAACGTATTCCCGATTGAAA  1346
             ||||||||||| |||||||||||||
Sbjct  9152  CGCTTAAACGTGTTCCCGATTGAAA  9128


>gi|2352977|gb|AF014113.1|AF014113  Vibrio cholerae potential flagellar protein (flaJ) gene, partial 
cds; and sigma 54 transcriptional activator (flrA), two-component 
sensor kinase protein (flrB), and two-component response 
regulator (flrC) genes, complete cds
Length=4683

 Score = 42.1 bits (21),  Expect = 0.89
 Identities = 24/25 (96%), Gaps = 0/25 (0%)
 Strand=Plus/Plus

Query  1322  CGCTTAAACGTATTCCCGATTGAAA  1346
             ||||||||||| |||||||||||||
Sbjct  1228  CGCTTAAACGTGTTCCCGATTGAAA  1252


>gi|56160984|gb|CP000002.2| Download subject sequence spanning the HSP Bacillus licheniformis ATCC 14580, complete genome
Length=4222334

 Features in this part of subject sequence:
   spore protease

 Score = 40.1 bits (20),  Expect = 3.5
 Identities = 23/24 (95%), Gaps = 0/24 (0%)
 Strand=Plus/Plus

Query  524      CTCCTTCTTCGTCAATATCCATCG  547
                |||||||||| |||||||||||||
Sbjct  2642721  CTCCTTCTTCATCAATATCCATCG  2642744


>gi|52346357|gb|AE017333.1| Download subject sequence spanning the HSP Bacillus licheniformis DSM 13, complete genome
Length=4222645

 Features in this part of subject sequence:
   Gpr

 Score = 40.1 bits (20),  Expect = 3.5
 Identities = 23/24 (95%), Gaps = 0/24 (0%)
 Strand=Plus/Plus

Query  524      CTCCTTCTTCGTCAATATCCATCG  547
                |||||||||| |||||||||||||
Sbjct  2643582  CTCCTTCTTCATCAATATCCATCG  2643605


>gi|32468743|emb|Z99111.2|BSUB0008 Download subject sequence spanning the HSP Bacillus subtilis complete genome (section 8 of 21): from 1410943 
to 1602922
Length=191980

 Score = 40.1 bits (20),  Expect = 3.5
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  2824   ACAGCACATGCTCATATGAC  2843
              ||||||||||||||||||||
Sbjct  71188  ACAGCACATGCTCATATGAC  71169


>gi|36784828|emb|BX571864.1| Download subject sequence spanning the HSP Photorhabdus luminescens subsp. laumondii TTO1 complete genome; 
segment 6/17
Length=349071

 Features in this part of subject sequence:
   unnamed protein product

 Score = 40.1 bits (20),  Expect = 3.5
 Identities = 23/24 (95%), Gaps = 0/24 (0%)
 Strand=Plus/Plus

Query  1274   TCCAAAACCATGTATTTCCTTTTG  1297
              |||||||||||| |||||||||||
Sbjct  72911  TCCAAAACCATGCATTTCCTTTTG  72934


>gi|2632216|emb|AJ222587.1|BS16829KB Download subject sequence spanning the HSP Bacillus subtilis 29kB DNA fragment from ykwC gene to cse15 gene
Length=29324

 Score = 40.1 bits (20),  Expect = 3.5
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  2824   ACAGCACATGCTCATATGAC  2843
              ||||||||||||||||||||
Sbjct  17182  ACAGCACATGCTCATATGAC  17163


>gi|24204616|gb|AE010300.1| Download subject sequence spanning the HSP Leptospira interrogans serovar lai str. 56601 chromosome I, complete 
sequence
Length=4332241

 Features in this part of subject sequence:
   Sphingomyelinase C precursor

 Score = 40.1 bits (20),  Expect = 3.5
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  19       AAATCAAGTATCCAGTTATT  38
                ||||||||||||||||||||
Sbjct  3497439  AAATCAAGTATCCAGTTATT  3497420


>gi|2351762|gb|U89708.1|LIU89708  Leptospira interrogans serovar lai hemolysis-associated protein-1 
(hap-1) and hemolytic protein (sphH) genes, complete cds
Length=5761

 Score = 40.1 bits (20),  Expect = 3.5
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  19    AAATCAAGTATCCAGTTATT  38
             ||||||||||||||||||||
Sbjct  3746  AAATCAAGTATCCAGTTATT  3765


>gi|45602555|gb|AE016823.1| Download subject sequence spanning the HSP Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130, 
chromosome I, complete sequence
Length=4277185

 Features in this part of subject sequence:
   sphingomyelinase C precursor

 Score = 40.1 bits (20),  Expect = 3.5
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  19      AAATCAAGTATCCAGTTATT  38
               ||||||||||||||||||||
Sbjct  803077  AAATCAAGTATCCAGTTATT  803096





  





  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental 
samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Mar 14, 2006  9:13 PM
  Number of letters in database: 1,455,966,080
  Number of sequences in database:  415,319
Lambda     K      H
    1.37    0.711     1.31 
Gapped
Lambda     K      H
    1.37    0.711     1.31 
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 415319
Number of Hits to DB: 1733515
Number of extensions: 85650
Number of successful extensions: 1404
Number of sequences better than 10: 3
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 1400
Number of HSP's successfully gapped: 9
Length of query: 2949
Length of database: 1455966080
Length adjustment: 21
Effective length of query: 2928
Effective length of database: 1455966080
Effective search space: 4263068682240
Effective search space used: 4237531547568
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
S2: 20 (40.1 bits)