BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1142328617-10580-155076893763.BLASTQ4 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) 3,778,135 sequences; 16,789,579,958 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports Query= gi|6706117|emb|AJ271050.1|ARH271050 Agrobacterium rhizogenes plasmid pRi2659 T-DNA sequence, ORF2, ORF3, ORF4, ORF8, ORF10, ORF11, ORF12, ORF13, ORF13a, ORF14 and cus gene Length=16110
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports Query= gi|6706117|emb|AJ271050.1|ARH271050 Agrobacterium rhizogenes plasmid pRi2659 T-DNA sequence, ORF2, ORF3, ORF4, ORF8, ORF10, ORF11, ORF12, ORF13, ORF13a, ORF14 and cus gene Length=16110
Score E Sequences producing significant alignments: (Bits) Value gi|6706117|emb|AJ271050.1|ARH271050 Agrobacterium rhizogenes ... 3.194e+04 0.0 gi|10567310|dbj|AP002086.1| Agrobacterium rhizogenes plasmid pRi 1.691e+04 0.0 gi|599608|emb|Z29365.1|ARCUCROL A.rhizogenes (NCPPB2659) DNA ... 1.021e+04 0.0 gi|2440224|dbj|AB006689.1| Agrobacterium rhizogenes plasmid p... 8034 0.0 gi|468518|emb|X64255.1|ARROLDNA A.rhizogenes genes rolA, rolB, r 6409 0.0 gi|10039386|dbj|AB039860.1| Agrobacterium rhizogenes plasmid ... 2956 0.0 gi|142245|gb|M60490.1|ATUORF Agrobacterium rhizogenes ORFs 10... 1792 0.0 gi|3292844|emb|AJ006270.1|ARAJ6270 Agrobacterium rhizogenes TL-D 603 6e-169 gi|38985|emb|X03433.1|ARTLROLB A. rhizogenes pRiA4 plasmid TL-DN 394 3e-106 gi|395266|emb|X68345.1|ARTDNAR A.rhizogenes plasmid pRi2659 T-DN 337 6e-89 gi|32447067|emb|BX294152.1| Pirellula sp. strain 1 complete geno 280 1e-71 gi|89213252|gb|U80928.5|REU80928 Rhizobium etli strain CFN42 ... 276 2e-70 gi|66934521|gb|DQ058415.1| Rhizobium etli strain 8C-3 plasmid... 268 5e-68 gi|86283807|gb|CP000134.1| Rhizobium etli CFN 42 plasmid p42a, c 121 7e-24 gi|3292842|emb|AJ006269.1|ARAJ6269 Agrobacterium rhizogenes TL-D 115 4e-22 gi|38983|emb|X12579.1|ARROLA Agrobacterium rhizogenes Ri plasmid 101 6e-18 gi|73810201|gb|DQ160187.1| Agrobacterium rhizogenes strain A4... 89.7 2e-14 gi|144364|gb|M24347.1|CE1TN72 Plasmid ColE1 (from E.coli)/transp 85.7 4e-13 gi|73854091|gb|CP000038.1| Shigella sonnei Ss046, complete genom 83.8 1e-12 gi|9971632|dbj|AP002527.1| Escherichia coli plasmid R721 genomic 83.8 1e-12 gi|76008824|gb|DQ176869.1| Pseudomonas aeruginosa transposon Tn7 81.8 6e-12 gi|74476643|gb|DQ176451.1| Acinetobacter baumannii isolate AB... 81.8 6e-12 gi|45505229|gb|AY553854.1| Wautersia eutropha glucosamine syn... 81.8 6e-12 gi|53829625|gb|AY619007.1| Pseudomonas aeruginosa PA5548 (PA5... 81.8 6e-12 gi|43755|emb|X17693.1|ISTN7TNS Transposon Tn7 transposition gene 81.8 6e-12 gi|1679828|emb|V00620.1|ISTN7X E. coli left end of transposon... 81.8 6e-12 gi|43095|emb|X03474.1|ECTN7GLM E. coli left end of transposon... 81.8 6e-12 gi|74476627|gb|DQ176450.1| Acinetobacter baumannii isolate AB... 81.8 6e-12 gi|148012|gb|M37391.1|ECOTNSAB E.coli (strain K-12) transposi... 81.8 6e-12 gi|76577973|gb|CP000124.1| Burkholderia pseudomallei 1710b chrom 61.9 5e-06 gi|66967517|gb|CP000011.2| Burkholderia mallei ATCC 23344 chromo 56.0 3e-04 gi|52211453|emb|BX571966.1| Burkholderia pseudomallei strain ... 56.0 3e-04 gi|15384865|emb|AJ310611.1|ECH310611 Erwinia chrysanthemi ybit g 56.0 3e-04 gi|52426793|gb|CP000010.1| Burkholderia mallei ATCC 23344 chromo 54.0 0.001 gi|15163447|gb|AE007925.1| Agrobacterium tumefaciens str. C58... 54.0 0.001 gi|6498173|dbj|AB016260.1| Agrobacterium tumefaciens plasmid pTi 54.0 0.001 gi|5042179|emb|AJ237588.1|ATU237588 Agrobacterium tumefaciens Ti 54.0 0.001 gi|4930295|dbj|AB027254.1| Cloning vector pSB4 tetR, tetA, hy... 54.0 0.001 gi|154707|gb|J01818.1|TIP58TDN1 Ti plasmid from (A.tumefacien... 54.0 0.001 gi|4836559|gb|AF126445.1|AF126445 Agrobacterium tumefaciens p... 54.0 0.001 gi|15982218|emb|AJ311874.1|CVE311874 Cloning vector pHELLSGATE 54.0 0.001 gi|3172549|gb|AF065243.1|AF065243 Agrobacterium tumefaciens s... 54.0 0.001 gi|33320493|gb|AF489904.1| Cloning vector pHellsgate 8, complete 54.0 0.001 gi|17744012|gb|AE009418.1| Agrobacterium tumefaciens str. C58... 50.1 0.020 gi|3004665|gb|AF019744.1| Agrobacterium tumefaciens plasmid p... 50.1 0.020 gi|52313187|emb|AJ508283.1|BPS508283 Burkholderia pseudomallei V 46.1 0.31 gi|52313186|emb|AJ508282.1|BPS508282 Burkholderia pseudomallei V 46.1 0.31 gi|39145|emb|X13283.1|ATTCIR03 Agrobacterium T-circle plasmid pP 46.1 0.31 gi|3402815|emb|AJ007829.1|CVE7829 Cloning Vector pGreen 46.1 0.31 gi|68056750|gb|CP000057.1| Haemophilus influenzae strain 86-028N 44.1 1.2 gi|72001690|gb|CP000095.1| Prochlorococcus marinus str. NATL2A, 44.1 1.2 gi|36786286|emb|BX571869.1| Photorhabdus luminescens subsp. l... 44.1 1.2 gi|39143|emb|X13280.1|ATTCIR01 Agrobacterium T-circle plasmid pP 44.1 1.2 gi|47076845|dbj|AB167400.1| Arabidopsis thaliana transgenic A... 44.1 1.2 gi|25168256|gb|AE001437.1| Clostridium acetobutylicum ATCC 824, 44.1 1.2 gi|7595336|gb|AF204967.1|AF204967 Arabidopsis thaliana histone H 44.1 1.2 gi|4836570|gb|AF126447.1|AF126447 Agrobacterium vitis plasmid... 44.1 1.2 gi|58012118|gb|AE014295.3| Bifidobacterium longum NCC2705, compl 44.1 1.2 gi|457632|gb|L14744.1|CLOPHOSBUT Clostridium acetobutylicum p... 44.1 1.2 gi|24080789|gb|AE005674.1| Shigella flexneri 2a str. 301, comple 42.1 4.8 gi|56676665|gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete 42.1 4.8 gi|78170183|gb|CP000108.1| Chlorobium chlorochromatii CaD3, comp 42.1 4.8 gi|71553748|gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 42.1 4.8 gi|84778498|dbj|AP008232.1| Sodalis glossinidius str. 'morsitans 42.1 4.8 gi|85674274|dbj|AP009048.1| Escherichia coli W3110 DNA, complete 42.1 4.8 gi|48994873|gb|U00096.2| Escherichia coli K-12 MG1655, complete 42.1 4.8 gi|47208328|dbj|BA000017.4| Staphylococcus aureus subsp. aureus 42.1 4.8 gi|57284222|gb|CP000046.1| Staphylococcus aureus subsp. aureus C 42.1 4.8 gi|87201381|gb|CP000253.1| Staphylococcus aureus subsp. aureus N 42.1 4.8 gi|87125858|gb|CP000255.1| Staphylococcus aureus subsp. aureus U 42.1 4.8 gi|24204616|gb|AE010300.1| Leptospira interrogans serovar lai... 42.1 4.8 gi|21672292|gb|AE013218.1| Buchnera aphidicola str. Sg (Schiz... 42.1 4.8 gi|30043918|gb|AE014073.1| Shigella flexneri 2a str. 2457T, comp 42.1 4.8 gi|49243355|emb|BX571857.1| Staphylococcus aureus strain MSSA476 42.1 4.8 gi|16504263|emb|AL627278.1| Salmonella enterica serovar Typhi... 42.1 4.8 gi|47118318|dbj|BA000004.3| Bacillus halodurans C-125 DNA, compl 42.1 4.8 gi|47118312|dbj|BA000033.2| Staphylococcus aureus subsp. aure... 42.1 4.8 gi|47118324|dbj|BA000018.3| Staphylococcus aureus subsp. aure... 42.1 4.8 gi|47118301|dbj|BA000007.2| Escherichia coli O157:H7 DNA, comple 42.1 4.8 gi|9947658|gb|AE004596.1| Pseudomonas aeruginosa PAO1, sectio... 42.1 4.8 gi|26983909|gb|AY057845.1| Zymomonas mobilis strain ZM4 plasmid 42.1 4.8 gi|41962|emb|X02003.1|ECMALP1 E. coli malP gene fragment for ... 42.1 4.8 gi|56126533|gb|CP000026.1| Salmonella enterica subsp. enteric... 42.1 4.8 gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enteric... 42.1 4.8 gi|62126203|gb|AE017220.1| Salmonella enterica subsp. enteric... 42.1 4.8 gi|41963|emb|X06791.1|ECMALP2 E. coli malP gene for maltodextrin 42.1 4.8 gi|45602555|gb|AE016823.1| Leptospira interrogans serovar Cop... 42.1 4.8 gi|41400296|gb|AE016958.1| Mycobacterium avium subsp. paratub... 42.1 4.8 gi|606010|gb|U18997.1|ECOUW67 Escherichia coli K-12 chromosom... 42.1 4.8 gi|49240382|emb|BX571856.1| Staphylococcus aureus subsp. aure... 42.1 4.8 gi|89143280|emb|AM233362.1| Francisella tularensis subsp. hol... 42.1 4.8 gi|56603679|emb|AJ749949.1| Francisella tularensis subsp. tul... 42.1 4.8 gi|56384585|gb|AE005174.2| Escherichia coli O157:H7 EDL933, comp 42.1 4.8 gi|2459980|gb|AF010151.1|AF010151 Pseudomonas aeruginosa PscN... 42.1 4.8 gi|82655308|emb|AJ938182.1| Staphylococcus aureus RF122 complete 42.1 4.8 gi|860731|gb|L42943.1|STAPEPCK Staphylococcus aureus (clone K... 42.1 4.8 gi|1255261|gb|U51133.1|SAU51133 Staphylococcus aureus phospho... 42.1 4.8 gi|81239530|gb|CP000034.1| Shigella dysenteriae Sd197, complete 42.1 4.8 gi|82409200|gb|CP000103.1| Nitrosospira multiformis ATCC 25196, 42.1 4.8 gi|81244029|gb|CP000036.1| Shigella boydii Sb227, complete genom 42.1 4.8 Alignments
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Mar 12, 2006 10:33 PM Number of letters in database: 1,448,968,235 Number of sequences in database: 413,348 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 413348 Number of Hits to DB: 181383347 Number of extensions: 165632978 Number of successful extensions: 9487 Number of sequences better than 10: 14 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 9459 Number of HSP's successfully gapped: 46 Length of query: 16110 Length of database: 1448968235 Length adjustment: 23 Effective length of query: 16087 Effective length of database: 1448968235 Effective search space: 23309551996445 Effective search space used: 23156612823097 A: 0 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits) S2: 21 (42.1 bits)