================================================== file name: repeat.seq sequences: 1 total length: 275000 bp (275000 bp excl N-runs) GC level: 41.69 % bases masked: 107737 bp ( 39.18 %) ================================================== number of length percentage elements* occupied of sequence -------------------------------------------------- SINEs: 262 61910 bp 22.51 % ALUs 210 53956 bp 19.62 % MIRs 52 7954 bp 2.89 % LINEs: 74 30412 bp 11.06 % LINE1 43 20650 bp 7.51 % LINE2 29 9337 bp 3.40 % L3/CR1 2 425 bp 0.15 % LTR elements: 16 6683 bp 2.43 % MaLRs 8 3276 bp 1.19 % ERVL 4 1476 bp 0.54 % ERV_classI 4 1931 bp 0.70 % ERV_classII 0 0 bp 0.00 % DNA elements: 23 5030 bp 1.83 % MER1_type 14 3209 bp 1.17 % MER2_type 6 1542 bp 0.56 % Unclassified: 0 0 bp 0.00 % Total interspersed repeats: 104035 bp 37.83 % Small RNA: 1 90 bp 0.03 % Satellites: 0 0 bp 0.00 % Simple repeats: 40 2210 bp 0.80 % Low complexity: 37 1444 bp 0.53 % ================================================== * most repeats fragmented by insertions or deletions have been counted as one element The sequence(s) were assumed to be of primate origin. RepeatMasker version 2002/07/13 , quick mode run with cross_match version 0.990329 RepBase / RepeatMasker database versions unknown