BLASTP 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman 
(1997), "Gapped BLAST and PSI-BLAST: a new generation of 
protein database search programs", Nucleic Acids Res. 25:3389-3402.

RID: 1142612764-4649-105717343074.BLASTQ4


Database: Non-redundant SwissProt sequences
           192,555 sequences; 71,789,538 total letters
 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs
Taxonomy reports


Query=  apo1_5|geneid_v1.2_predicted_protein_5|402_AA
Length=401

                                                                   Score     E
Sequences producing significant alignments:                        (Bits)  Value

gi|6137318|sp|O75312|ZPR1_HUMAN  Zinc-finger protein ZPR1 (Zinc f   776    0.0    
gi|24636263|sp|Q9BY43|CHM4A_HUMAN  Charged multivesicular body...  32.0    0.44   
gi|14194461|sp|Q99996|AKAP9_HUMAN  A-kinase anchor protein 9 (...  28.9    3.7    
gi|48475012|sp|Q9UHD9|UBQL2_HUMAN  Ubiquilin-2 (Protein linkin...  28.5    4.8    
gi|20454926|sp|Q96RT8|GCP5_HUMAN  Gamma-tubulin complex component  28.5    4.8    
gi|68053318|sp|Q9H3S7|PTN23_HUMAN  Tyrosine-protein phosphatas...  28.5    4.8    
gi|68565165|sp|Q69YI7|CI090_HUMAN  Protein C9orf90                 27.7    8.3    
gi|71151996|sp|Q13765|NACA_HUMAN  Nascent polypeptide-associat...  27.7    8.3    
gi|38372816|sp|Q8NH60|O52J3_HUMAN  Olfactory receptor 52J3         27.7    8.3    
gi|17369320|sp|Q9NRC6|SPTN5_HUMAN  Spectrin beta chain, brain ...  27.7    8.3    
gi|76789675|sp|Q9Y2J4|AMOL2_HUMAN  Angiomotin-like protein 2 (Lem  27.7    8.3    

Alignments

>gi|6137318|sp|O75312|ZPR1_HUMAN  Zinc-finger protein ZPR1 (Zinc finger protein 259)
Length=459

 Score =  776 bits (2004),  Expect = 0.0
 Identities = 401/401 (100%), Positives = 401/401 (100%), Gaps = 0/401 (0%)

Query  1    MTRLLLTKIPFFREIIVSSFSCEHCGWNNTEIQSAGRIQDQGVRYTLSVRALEDMNREVV  60
            MTRLLLTKIPFFREIIVSSFSCEHCGWNNTEIQSAGRIQDQGVRYTLSVRALEDMNREVV
Sbjct  59   MTRLLLTKIPFFREIIVSSFSCEHCGWNNTEIQSAGRIQDQGVRYTLSVRALEDMNREVV  118

Query  61   KTDSAATRIPELDFEIPAFSQKGALTTVEGLITRAISGLEQDQPARRANKDATAERIDEF  120
            KTDSAATRIPELDFEIPAFSQKGALTTVEGLITRAISGLEQDQPARRANKDATAERIDEF
Sbjct  119  KTDSAATRIPELDFEIPAFSQKGALTTVEGLITRAISGLEQDQPARRANKDATAERIDEF  178

Query  121  IVKLKELKQVASPFTLIIDDPSGNSFVENPHAPQKDDALVITHYNRTRQQEEMLGLQeea  180
            IVKLKELKQVASPFTLIIDDPSGNSFVENPHAPQKDDALVITHYNRTRQQEEMLGLQEEA
Sbjct  179  IVKLKELKQVASPFTLIIDDPSGNSFVENPHAPQKDDALVITHYNRTRQQEEMLGLQEEA  238

Query  181  paekpeeeDLRNEVLQFSTNCPECNAPAQTNMKLVQIPHFKEVIIMATNCENCGHRTNEV  240
            PAEKPEEEDLRNEVLQFSTNCPECNAPAQTNMKLVQIPHFKEVIIMATNCENCGHRTNEV
Sbjct  239  PAEKPEEEDLRNEVLQFSTNCPECNAPAQTNMKLVQIPHFKEVIIMATNCENCGHRTNEV  298

Query  241  KSGGAVEPLGTRITLHITDASDMTRDLLKSETCSVEIPELEFELGMAVLGGKFTTLEGLL  300
            KSGGAVEPLGTRITLHITDASDMTRDLLKSETCSVEIPELEFELGMAVLGGKFTTLEGLL
Sbjct  299  KSGGAVEPLGTRITLHITDASDMTRDLLKSETCSVEIPELEFELGMAVLGGKFTTLEGLL  358

Query  301  KDIRELVTKNPFTLGDSSNPGQTERLQEFSQKMDQIIEGNMKAHFIMDDPAGNSYLQNVY  360
            KDIRELVTKNPFTLGDSSNPGQTERLQEFSQKMDQIIEGNMKAHFIMDDPAGNSYLQNVY
Sbjct  359  KDIRELVTKNPFTLGDSSNPGQTERLQEFSQKMDQIIEGNMKAHFIMDDPAGNSYLQNVY  418

Query  361  APEDDPEMKVERYKRTFDQNEELGLNDMKTEGYEAGLAPQR  401
            APEDDPEMKVERYKRTFDQNEELGLNDMKTEGYEAGLAPQR
Sbjct  419  APEDDPEMKVERYKRTFDQNEELGLNDMKTEGYEAGLAPQR  459


 Score =  124 bits (312),  Expect = 5e-29
 Identities = 64/200 (32%), Positives = 109/200 (54%), Gaps = 3/200 (1%)

Query  189  DLRNEVLQFSTNCPECNAPAQTNMKLVQIPHFKEVIIMATNCENCGHRTNEVKSGGAVEP  248
            D   +  +  + C  C     T + L +IP F+E+I+ + +CE+CG    E++S G ++ 
Sbjct  39   DEEQQPTEIESLCMNCYCNGMTRLLLTKIPFFREIIVSSFSCEHCGWNNTEIQSAGRIQD  98

Query  249  LGTRITLHITDASDMTRDLLKSETCSVEIPELEFELGMAVLGGKFTTLEGLL-KDIRELV  307
             G R TL +    DM R+++K+++ +  IPEL+FE+      G  TT+EGL+ + I  L 
Sbjct  99   QGVRYTLSVRALEDMNREVVKTDSAATRIPELDFEIPAFSQKGALTTVEGLITRAISGLE  158

Query  308  TKNPFTLGDSSNPGQTERLQEFSQKMDQIIEGNMKAHFIMDDPAGNSYLQNVYAPEDDPE  367
               P     ++     ER+ EF  K+ ++ +       I+DDP+GNS+++N +AP+ D  
Sbjct  159  QDQP--ARRANKDATAERIDEFIVKLKELKQVASPFTLIIDDPSGNSFVENPHAPQKDDA  216

Query  368  MKVERYKRTFDQNEELGLND  387
            + +  Y RT  Q E LGL +
Sbjct  217  LVITHYNRTRQQEEMLGLQE  236


>gi|24636263|sp|Q9BY43|CHM4A_HUMAN  Charged multivesicular body protein 4a (Chromatin modifying protein 
4a) (CHMP4a) (Vacuolar protein sorting 7-1) (SNF7-1) 
(hSnf-1) (SNF7 homolog associated with Alix 2)
Length=222

 Score = 32.0 bits (71),  Expect = 0.44
 Identities = 27/114 (23%), Positives = 55/114 (48%), Gaps = 10/114 (8%)

Query  31   EIQSAGRIQDQGVRYTL-SVRALEDMNREVVKTDSAATRIPELDFEIPAFSQKGALTTVE  89
            E+Q+A +   +  R  L ++R  +   +++ +TD     +  L+F+  A   + A T  E
Sbjct  47   ELQTAKKYGTKNKRAALQALRRKKRFEQQLAQTDGT---LSTLEFQREAI--ENATTNAE  101

Query  90   GLITRAISGLEQDQPARRANKDATAERIDEFIVKLKELKQVASPFTLIIDDPSG  143
             L T  ++     Q  ++A +D   +++DE +  + E ++VA   +  I  P G
Sbjct  102  VLRTMELAA----QSMKKAYQDMDIDKVDELMTDITEQQEVAQQISDAISRPMG  151


>gi|14194461|sp|Q99996|AKAP9_HUMAN  A-kinase anchor protein 9 (Protein kinase A-anchoring protein 
9) (PRKA9) (A-kinase anchor protein 450 kDa) (AKAP 450) (A-kinase 
anchor protein 350 kDa) (AKAP 350) (hgAKAP 350) (AKAP 
120-like protein) (Hyperion protein) (Yotiao protein) (Centrosome- 
and Golgi-localized PKN-associated protein) (CG-NAP)
Length=3911

 Score = 28.9 bits (63),  Expect = 3.7
 Identities = 22/92 (23%), Positives = 45/92 (48%), Gaps = 6/92 (6%)

Query  300   LKDIRELVTKNPFTLGDSSNPGQTERLQEFSQKMDQIIEGNMKAHFIMDDPAGNSYLQNV  359
             +++ REL+++    +   + P + + LQE  + M + +E   +A  + DD       + V
Sbjct  1981  IQEERELLSRQKEAMKAEAGPVEQQLLQETEKLMKEKLEVQCQAEKVRDD-----LQKQV  2035

Query  360   YAPEDDPEMKVERYKRTFDQNEELGLNDMKTE  391
              A E D E +V R+    +Q +   L D++ +
Sbjct  2036  KALEIDVEEQVSRFIE-LEQEKNTELMDLRQQ  2066


>gi|48475012|sp|Q9UHD9|UBQL2_HUMAN  Ubiquilin-2 (Protein linking IAP with cytoskeleton 2) (PLIC-2) 
(hPLIC-2) (Ubiquitin-like product Chap1/Dsk2) (DSK2 homolog) 
(Chap1)
Length=624

 Score = 28.5 bits (62),  Expect = 4.8
 Identities = 21/91 (23%), Positives = 44/91 (48%), Gaps = 10/91 (10%)

Query  307  VTKNPFTLGDSSNPGQTERLQEFSQKMDQIIEGNMKAHFIMDDPAGNSYLQNVYAPEDDP  366
            + +NPF     SNP    +L   + +M Q+I+ N +   ++++P     ++       +P
Sbjct  185  IMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHLLNNP---DIMRQTLEIARNP  241

Query  367  EMKVERYKRTFDQNEELGLNDMKT--EGYEA  395
             M  E  +     N++L L+++++   GY A
Sbjct  242  AMMQEMMR-----NQDLALSNLESIPGGYNA  267


>gi|20454926|sp|Q96RT8|GCP5_HUMAN  Gamma-tubulin complex component 5 (GCP-5)
Length=1024

 Score = 28.5 bits (62),  Expect = 4.8
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 10/79 (12%)

Query  87   TVEGLITRAISGLEQDQPARRANKDATAERIDEFIVKLKELK-----QVASPFTLIIDDP  141
            T+EG+  + +  +  D     + K  T E ++  +  +KE+K      + S    + D P
Sbjct  64   TIEGIYEKFV--IHSDLSKAASWKRLTEEFLNAPLPSIKEIKTDAHYSILSLLLCLSDSP  121

Query  142  SGNSFVENP---HAPQKDD  157
            S +S+VE P      +KDD
Sbjct  122  SNSSYVETPRNKEVEKKDD  140


>gi|68053318|sp|Q9H3S7|PTN23_HUMAN  Tyrosine-protein phosphatase non-receptor type 23 (His-domain 
containing protein tyrosine phosphatase) (HD-PTP) (Protein 
tyrosine phosphatase TD14) (PTP-TD14)
Length=1636

 Score = 28.5 bits (62),  Expect = 4.8
 Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 0/25 (0%)

Query  286  MAVLGGKFTTLEGLLKDIRELVTKN  310
            M VL G FT +E  LKDIR+L+ ++
Sbjct  442  MQVLSGVFTDVEASLKDIRDLLEED  466


>gi|68565165|sp|Q69YI7|CI090_HUMAN  Protein C9orf90
Length=327

 Score = 27.7 bits (60),  Expect = 8.3
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 3/73 (4%)

Query  253  ITLHITDASDMTRDLLKSE---TCSVEIPELEFELGMAVLGGKFTTLEGLLKDIRELVTK  309
            I  H+   +D+ + + +S+    C+ E      E   A L      L  ++KD R  +  
Sbjct  243  IAQHLEQQNDLLQMIRRSQEVQACAQERQAQAMEGTQAALSVLIQVLRPMIKDFRRYLQS  302

Query  310  NPFTLGDSSNPGQ  322
            N      +S+PGQ
Sbjct  303  NTANPAPASDPGQ  315


>gi|71151996|sp|Q13765|NACA_HUMAN  Nascent polypeptide-associated complex alpha subunit (NAC-alpha) 
(Alpha-NAC) (Hom s 2.02)
Length=215

 Score = 27.7 bits (60),  Expect = 8.3
 Identities = 18/77 (23%), Positives = 40/77 (51%), Gaps = 2/77 (2%)

Query  58   EVVKTDSAATRIPELDFEIPAFSQKGALTTVEGLITR--AISGLEQDQPARRANKDATAE  115
            +V K+ ++ T I   + +I   SQ+  L   E    +  A+S ++++       +++  E
Sbjct  110  DVYKSPASDTYIVFGEAKIEDLSQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEE  169

Query  116  RIDEFIVKLKELKQVAS  132
             +DE  V++K+++ V S
Sbjct  170  EVDETGVEVKDIELVMS  186


>gi|38372816|sp|Q8NH60|O52J3_HUMAN  Olfactory receptor 52J3
Length=311

 Score = 27.7 bits (60),  Expect = 8.3
 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 9/85 (10%)

Query  5    LLTKIPFFREIIVSSFSCEHCGWNNTEIQSAGRIQDQGVRYTLSVRALEDMNREVVKTD-  63
            L+ ++PF +  I++   CEH G       S G I+  G+ Y L V +   +N  ++    
Sbjct  164  LIYRLPFCQAHIIAHSYCEHMGIAKL---SCGNIRINGI-YGLFVVSFFVLNLVLIGISY  219

Query  64   ----SAATRIPELDFEIPAFSQKGA  84
                 A  R+P  D ++ A S  GA
Sbjct  220  VYILRAVFRLPSHDAQLKALSTCGA  244


>gi|17369320|sp|Q9NRC6|SPTN5_HUMAN  Spectrin beta chain, brain 4 (Spectrin, non-erythroid beta chain 
4) (Beta-V spectrin) (BSPECV)
Length=3674

 Score = 27.7 bits (60),  Expect = 8.3
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 6/49 (12%)

Query  289   LGGKFTTLEGLLKDIRELVTKNPFTLGDSSNPGQTERLQEFSQKMDQII  337
             L G+  TL+GLLK ++E V +       +    +T+  Q F Q+  Q++
Sbjct  1073  LQGQVETLQGLLKQVQEQVAQR------ARRQAETQARQSFLQESQQLL  1115


>gi|76789675|sp|Q9Y2J4|AMOL2_HUMAN  Angiomotin-like protein 2 (Leman coiled-coil protein) (LCCP)
Length=779

 Score = 27.7 bits (60),  Expect = 8.3
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 6/80 (7%)

Query  53   EDMNREVVKTDSAATRIPELDFEIPAFSQKGALTTVEGLITRAISGLEQDQPARRANKDA  112
            E + RE+  +   A RI +L+ EI   S+          +TRA S  E  +   R   D+
Sbjct  329  ERLQRELESSAEKAGRIEKLESEIQRLSE------AHESLTRASSKREALEKTMRNKMDS  382

Query  113  TAERIDEFIVKLKELKQVAS  132
               R+ +F   L+E  + A+
Sbjct  383  EMRRLQDFNRDLRERLESAN  402






  Database: Non-redundant SwissProt sequences
    Posted date:  Mar 15, 2006  2:23 AM
  Number of letters in database: 7,391,856
  Number of sequences in database:  13,628
Lambda     K      H
   0.316    0.133    0.379 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13628
Number of Hits to DB: 1860
Number of extensions: 79
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 401
Length of database: 7391856
Length adjustment: 99
Effective length of query: 302
Effective length of database: 7391856
Effective search space: 2232340512
Effective search space used: 1824890568
T: 11
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 60 (27.7 bits)







 


 
Format
  


 


 
Show
  Graphical OverviewLinkoutSequence RetrievalNCBI-giAlignmentPSSMBioseq in HTMLPlain textASN.1XMLformat


 


 

  CDS feature


 


 

  Masking CharacterX for protein, n for nucleotideLower Case
Masking ColorBlackGreyRed



 


 
Number of:
  Descriptions010501002505001000
Alignments010501002505001000



 


 
Alignment view
  PairwisePairwise with identitiesquery-anchored with identitiesquery-anchored without identitiesflat query-anchored with identitiesflat query-anchored without identitiesHit Table


 


 
Format for PSI-BLAST
  with inclusion threshold:


 


 
Limit results by entrez query
   or select from:All organismsViruses [ORGN]Archaea [ORGN]Bacteria [ORGN]Eukaryota [ORGN]Viridiplantae [ORGN]Fungi [ORGN]Metazoa [ORGN]Arthropoda [ORGN]Vertebrata [ORGN]Mammalia [ORGN]Rodentia [ORGN]Primates [ORGN]-------------------Aeropyrum pernix [ORGN]Aquifex aeolicus [ORGN]Arabidopsis thaliana [ORGN]Bacillus subtilis [ORGN]Bos taurus [ORGN]Caenorhabditis elegans [ORGN]Canis familiaris[ORGN]Danio rerio [ORGN]Dictyostelium discoideum [ORGN]Drosophila melanogaster [ORGN]Escherichia coli [ORGN]Gallus gallus [ORGN]Homo sapiens [ORGN]Human immunodeficiency virus type 1 [ORGN]Methanococcus jannaschii [ORGN]Mus musculus [ORGN]Oryctolagus cuniculus [ORGN]Oryza sativa [ORGN]Ovis aries [ORGN]Plasmodium falciparum [ORGN]Rattus norvegicus [ORGN]Saccharomyces cerevisiae [ORGN]Schizosaccharomyces pombe [ORGN]Xenopus tropicalis[ORGN]Simian immunodeficiency virus [ORGN]Sus scrofa[ORGN]Synechocystis PCC6803 [ORGN]Takifugu rubripes [ORGN]Xenopus laevis [ORGN]Zea mays [ORGN]


 


 
Expect value range:
    







 or