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BLASTP 2.2.13 [Nov-27-2005] 

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman 
(1997), "Gapped BLAST and PSI-BLAST: a new generation of 
protein database search programs", Nucleic Acids Res. 25:3389-3402.

RID: 1142528474-20976-139096722018.BLASTQ4


Database: Non-redundant SwissProt sequences
           192,555 sequences; 71,789,538 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs
Taxonomy reports


Query=  subseq2|GENSCAN_predicted_peptide_4|221_aa
Length=221

Distribution of 8 Blast Hits on the Query Sequence


                                                                   Score     E
Sequences producing significant alignments:                        (Bits)  Value

gi|13637934|sp|Q03135|CAV1_HUMAN  Caveolin-1                        348    7e-97  Gene info
gi|3182930|sp|P56539|CAV3_HUMAN  Caveolin-3 (M-caveolin)            214    2e-56  Gene info
gi|5915890|sp|P51636|CAV2_HUMAN  Caveolin-2                         105    1e-23  Gene info
gi|1730573|sp|Q01970|PLCB3_HUMAN  1-phosphatidylinositol-4,5-b...  28.1    2.7    Gene info
gi|12643888|sp|Q9UI46|DYI3_HUMAN  Dynein intermediate chain 1,...  27.7    3.5    Gene info
gi|11135162|sp|O95857|TSN13_HUMAN  Tetraspanin-13 (Tspan-13) (...  26.9    6.0    Gene info
gi|41018156|sp|Q9UN76|S6A14_HUMAN  Sodium- and chloride-depend...  26.9    6.0    Gene info
gi|73918928|sp|Q8IWA5|CTL2_HUMAN  Choline transporter-like pro...  26.6    7.9    Gene info


Alignments


  

>gi|13637934|sp|Q03135|CAV1_HUMAN Gene info Caveolin-1
Length=178

 Score =  348 bits (894),  Expect = 7e-97
 Identities = 168/168 (100%), Positives = 168/168 (100%), Gaps = 0/168 (0%)

Query  54   GHLYTVPIREQGNIYKPNNKAMADELSEKQVYDAHTKEIDLVNRDPKHLNDDVVKIDFED  113
            GHLYTVPIREQGNIYKPNNKAMADELSEKQVYDAHTKEIDLVNRDPKHLNDDVVKIDFED
Sbjct  11   GHLYTVPIREQGNIYKPNNKAMADELSEKQVYDAHTKEIDLVNRDPKHLNDDVVKIDFED  70

Query  114  VIAEPEGTHSFDGIWKASFTTFTVTKYWFYRLLSALFGIPMALIWGIYFAILSFLHIWAV  173
            VIAEPEGTHSFDGIWKASFTTFTVTKYWFYRLLSALFGIPMALIWGIYFAILSFLHIWAV
Sbjct  71   VIAEPEGTHSFDGIWKASFTTFTVTKYWFYRLLSALFGIPMALIWGIYFAILSFLHIWAV  130

Query  174  VPCIKSFLIEIQCISRVYSIYVHTVCDPLFEAVGKIFSNVRINLQKEI  221
            VPCIKSFLIEIQCISRVYSIYVHTVCDPLFEAVGKIFSNVRINLQKEI
Sbjct  131  VPCIKSFLIEIQCISRVYSIYVHTVCDPLFEAVGKIFSNVRINLQKEI  178


>gi|3182930|sp|P56539|CAV3_HUMAN Gene info Caveolin-3 (M-caveolin)
Length=151

 Score =  214 bits (545),  Expect = 2e-56
 Identities = 93/144 (64%), Positives = 122/144 (84%), Gaps = 0/144 (0%)

Query  78   ELSEKQVYDAHTKEIDLVNRDPKHLNDDVVKIDFEDVIAEPEGTHSFDGIWKASFTTFTV  137
            +L  + V D H KEIDLVNRDPK++N+D+VK+DFEDVIAEP GT+SFDG+WK S+TTFTV
Sbjct  8    DLEAQIVKDIHCKEIDLVNRDPKNINEDIVKVDFEDVIAEPVGTYSFDGVWKVSYTTFTV  67

Query  138  TKYWFYRLLSALFGIPMALIWGIYFAILSFLHIWAVVPCIKSFLIEIQCISRVYSIYVHT  197
            +KYW YRLLS L G+P+AL+WG  FA +SF HIWAVVPCIKS+LIEIQCIS +YS+ + T
Sbjct  68   SKYWCYRLLSTLLGVPLALLWGFLFACISFCHIWAVVPCIKSYLIEIQCISHIYSLCIRT  127

Query  198  VCDPLFEAVGKIFSNVRINLQKEI  221
             C+PLF A+G++ S++++ L+KE+
Sbjct  128  FCNPLFAALGQVCSSIKVVLRKEV  151


>gi|5915890|sp|P51636|CAV2_HUMAN Gene info Caveolin-2
Length=162

 Score =  105 bits (262),  Expect = 1e-23
 Identities = 51/125 (40%), Positives = 76/125 (60%), Gaps = 1/125 (0%)

Query  96   NRDPKHLNDDVVKIDFEDVIAEPEGTHSFDGIWKASFTTFTVTKYWFYRLLSALFGIPMA  155
            +RDP  LN  + K+ FEDVIAEP  THSFD +W  S   F ++KY  Y+ L+    IP+A
Sbjct  39   DRDPHRLNSHL-KLGFEDVIAEPVTTHSFDKVWICSHALFEISKYVMYKFLTVFLAIPLA  97

Query  156  LIWGIYFAILSFLHIWAVVPCIKSFLIEIQCISRVYSIYVHTVCDPLFEAVGKIFSNVRI  215
             I GI FA LS LHIW ++P +K+ L+ +  +  ++      +  PL  +VG+ FS+V +
Sbjct  98   FIAGILFATLSCLHIWILMPFVKTCLMVLPSVQTIWKSVTDVIIAPLCTSVGRCFSSVSL  157

Query  216  NLQKE  220
             L ++
Sbjct  158  QLSQD  162


>gi|1730573|sp|Q01970|PLCB3_HUMAN Gene info 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta 
3 (Phosphoinositide phospholipase C) (Phospholipase C-beta-3) 
(PLC-beta-3)
Length=1234

 Score = 28.1 bits (61),  Expect = 2.7
 Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 0/48 (0%)

Query  62    REQGNIYKPNNKAMADELSEKQVYDAHTKEIDLVNRDPKHLNDDVVKI  109
             RE+  + K  ++   + +SE ++ D H KE +L   + +H+ + V  I
Sbjct  1089  REKKELQKILDRKRHNSISEAKMRDKHKKEAELTEINRRHITESVNSI  1136


>gi|12643888|sp|Q9UI46|DYI3_HUMAN Gene info Dynein intermediate chain 1, axonemal (Axonemal dynein intermediate 
chain 1)
Length=699

 Score = 27.7 bits (60),  Expect = 3.5
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 3/39 (7%)

Query  63   EQGNIYKPNNKAMADELSEKQVYDAHTKEIDLVNRDPKH  101
            E+G IYK +    +  L     YDAH   +D V+ +P H
Sbjct  517  EEGKIYKCSKSYSSQFLD---TYDAHNMSVDTVSWNPYH  552


>gi|11135162|sp|O95857|TSN13_HUMAN Gene info Tetraspanin-13 (Tspan-13) (Transmembrane 4 superfamily member 
13) (Tetraspan NET-6)
Length=204

 Score = 26.9 bits (58),  Expect = 6.0
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 0/41 (0%)

Query  158  WGIYFAILSFLHIWAVVPCIKSFLIEIQCISRVYSIYVHTV  198
            WGI F ++S L +  VV  +  FL  I  +  + ++  H V
Sbjct  33   WGIGFGLISSLRVVGVVIAVGIFLFLIALVGLIGAVKHHQV  73


>gi|41018156|sp|Q9UN76|S6A14_HUMAN Gene info Sodium- and chloride-dependent neutral and basic amino acid transporter 
B(0+) (Amino acid transporter ATB0+) (Solute carrier 
family 6 member 14)
Length=642

 Score = 26.9 bits (58),  Expect = 6.0
 Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 5/77 (6%)

Query  127  IWKASFTTFTVTKYWF---YRLLSALFGIPMALIWGIY--FAILSFLHIWAVVPCIKSFL  181
            +W+  + T++     F   Y ++ AL G+P+  +      FA L  + +W ++P  +   
Sbjct  59   VWRFPYLTYSNGGGAFLIPYAIMLALAGLPLFFLECSLGQFASLGPVSVWRILPLFQGVG  118

Query  182  IEIQCISRVYSIYVHTV  198
            I +  IS   +IY + +
Sbjct  119  ITMVLISIFVTIYYNVI  135


>gi|73918928|sp|Q8IWA5|CTL2_HUMAN Gene info Choline transporter-like protein 2 (Solute carrier family 44 
member 2)
Length=706

 Score = 26.6 bits (57),  Expect = 7.9
 Identities = 14/62 (22%), Positives = 31/62 (50%), Gaps = 8/62 (12%)

Query  119  EGTHSFDGIWKAS------FTTFTVTKYWFYRLLSALFGIPMALIWGIYFAILSFLHIWA  172
            EG    +G+ +A       F  +TV+ YW   ++  +  + M+L++ I    L+ + +W 
Sbjct  206  EGAKKANGVLEARQLAMRIFEDYTVSWYWI--IIGLVIAMAMSLLFIILLRFLAGIMVWV  263

Query  173  VV  174
            ++
Sbjct  264  MI  265





  





  Database: Non-redundant SwissProt sequences
    Posted date:  Mar 15, 2006  2:23 AM
  Number of letters in database: 7,391,856
  Number of sequences in database:  13,628
Lambda     K      H
   0.327    0.141    0.448 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13628
Number of Hits to DB: 344649
Number of extensions: 12976
Number of successful extensions: 39
Number of sequences better than 10: 1
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 1
Length of query: 221
Length of database: 7391856
Length adjustment: 93
Effective length of query: 128
Effective length of database: 7391856
Effective search space: 946157568
Effective search space used: 783929856
T: 11
A: 40
X1: 15 (7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 57 (26.6 bits)