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BLASTP 2.2.13 [Nov-27-2005] 

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman 
(1997), "Gapped BLAST and PSI-BLAST: a new generation of 
protein database search programs", Nucleic Acids Res. 25:3389-3402.

RID: 1142527692-29160-72958964236.BLASTQ4


Database: Non-redundant SwissProt sequences
           192,555 sequences; 71,789,538 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs
Taxonomy reports


Query=  subseq2|GENSCAN_predicted_peptide_2|219_aa
Length=219

Distribution of 10 Blast Hits on the Query Sequence


                                                                   Score     E
Sequences producing significant alignments:                        (Bits)  Value

gi|5915890|sp|P51636|CAV2_HUMAN  Caveolin-2                         232    7e-62  Gene info
gi|13637934|sp|Q03135|CAV1_HUMAN  Caveolin-1                       77.4    4e-15  Gene info
gi|3182930|sp|P56539|CAV3_HUMAN  Caveolin-3 (M-caveolin)           77.4    4e-15  Gene info
gi|6226894|sp|Q00839|HNRPU_HUMAN  Heterogenous nuclear ribonuc...  26.9    6.0    Gene info
gi|141697|sp|P15822|ZEP1_HUMAN  Zinc finger protein 40 (Human ...  26.9    6.0    Gene info
gi|1346079|sp|P48169|GBRA4_HUMAN  Gamma-aminobutyric-acid rece...  26.9    6.0    Gene info
gi|134873|sp|P23327|SRCH_HUMAN  Sarcoplasmic reticulum histidi...  26.9    6.0    Gene info
gi|13878821|sp|Q92956|TNR14_HUMAN  Tumor necrosis factor recep...  26.6    7.9    Gene info
gi|6094322|sp|Q07889|SOS1_HUMAN  Son of sevenless homolog 1 (SOS-  26.6    7.9    Gene info
gi|1717829|sp|Q06418|TYRO3_HUMAN  Tyrosine-protein kinase rece...  26.6    7.9    Gene info


Alignments


  

>gi|5915890|sp|P51636|CAV2_HUMAN Gene info Caveolin-2
Length=162

 Score =  232 bits (592),  Expect = 7e-62
 Identities = 112/112 (100%), Positives = 112/112 (100%), Gaps = 0/112 (0%)

Query  1    MGLETEKADVQLFMDDDSYSHHSGLEYADPEKFADSDQDRDPHRLNSHLKLGFEDVIAEP  60
            MGLETEKADVQLFMDDDSYSHHSGLEYADPEKFADSDQDRDPHRLNSHLKLGFEDVIAEP
Sbjct  1    MGLETEKADVQLFMDDDSYSHHSGLEYADPEKFADSDQDRDPHRLNSHLKLGFEDVIAEP  60

Query  61   VTTHSFDKVWICSHALFEISKYVMYKFLTVFLAIPLAFIAGILFATLSCLHI  112
            VTTHSFDKVWICSHALFEISKYVMYKFLTVFLAIPLAFIAGILFATLSCLHI
Sbjct  61   VTTHSFDKVWICSHALFEISKYVMYKFLTVFLAIPLAFIAGILFATLSCLHI  112


>gi|13637934|sp|Q03135|CAV1_HUMAN Gene info Caveolin-1
Length=178

 Score = 77.4 bits (189),  Expect = 4e-15
 Identities = 39/75 (52%), Positives = 48/75 (64%), Gaps = 1/75 (1%)

Query  39   DRDPHRLNSHL-KLGFEDVIAEPVTTHSFDKVWICSHALFEISKYVMYKFLTVFLAIPLA  97
            +RDP  LN  + K+ FEDVIAEP  THSFD +W  S   F ++KY  Y+ L+    IP+A
Sbjct  53   NRDPKHLNDDVVKIDFEDVIAEPEGTHSFDGIWKASFTTFTVTKYWFYRLLSALFGIPMA  112

Query  98   FIAGILFATLSCLHI  112
             I GI FA LS LHI
Sbjct  113  LIWGIYFAILSFLHI  127


>gi|3182930|sp|P56539|CAV3_HUMAN Gene info Caveolin-3 (M-caveolin)
Length=151

 Score = 77.4 bits (189),  Expect = 4e-15
 Identities = 38/75 (50%), Positives = 50/75 (66%), Gaps = 1/75 (1%)

Query  39   DRDPHRLNSHL-KLGFEDVIAEPVTTHSFDKVWICSHALFEISKYVMYKFLTVFLAIPLA  97
            +RDP  +N  + K+ FEDVIAEPV T+SFD VW  S+  F +SKY  Y+ L+  L +PLA
Sbjct  26   NRDPKNINEDIVKVDFEDVIAEPVGTYSFDGVWKVSYTTFTVSKYWCYRLLSTLLGVPLA  85

Query  98   FIAGILFATLSCLHI  112
             + G LFA +S  HI
Sbjct  86   LLWGFLFACISFCHI  100


>gi|6226894|sp|Q00839|HNRPU_HUMAN Gene info Heterogenous nuclear ribonucleoprotein U (hnRNP U) (Scaffold 
attachment factor A) (SAF-A) (p120) (pp120)
Length=824

 Score = 26.9 bits (58),  Expect = 6.0
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 0/53 (0%)

Query  29   DPEKFADSDQDRDPHRLNSHLKLGFEDVIAEPVTTHSFDKVWICSHALFEISK  81
            + E F D+    D +  + H K+  + + A  +T  SF  +W    A + +SK
Sbjct  278  EDEHFDDTVVCLDTYNCDLHFKISRDRLSASSLTMESFAFLWAGGRASYGVSK  330


>gi|141697|sp|P15822|ZEP1_HUMAN Gene info Zinc finger protein 40 (Human immunodeficiency virus type I enhancer-binding 
protein 1) (HIV-EP1) (Major histocompatibility 
complex binding protein 1) (MBP-1) (Positive regulatory domain 
II binding factor 1) (PRDII-BF1)
Length=2717

 Score = 26.9 bits (58),  Expect = 6.0
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 0/54 (0%)

Query  12   LFMDDDSYSHHSGLEYADPEKFADSDQDRDPHRLNSHLKLGFEDVIAEPVTTHS  65
            LF+   S       E ADP KF+D D+  D   L+S  +    + I+    T S
Sbjct  135  LFLQQPSELRRWRSEGADPAKFSDLDEQCDSSSLSSKTRTDNSECISSHCGTTS  188


>gi|1346079|sp|P48169|GBRA4_HUMAN Gene info Gamma-aminobutyric-acid receptor alpha-4 subunit precursor (GABA(A) 
receptor)
Length=554

 Score = 26.9 bits (58),  Expect = 6.0
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)

Query  96   LAFIAGILFATLS--CLHICLNQILGQSE  122
            +A  AG+ FA L   CL +CLN+  GQ++
Sbjct  10   IALSAGVSFALLRFLCLAVCLNESPGQNQ  38


>gi|134873|sp|P23327|SRCH_HUMAN Gene info Sarcoplasmic reticulum histidine-rich calcium-binding protein 
precursor
Length=699

 Score = 26.9 bits (58),  Expect = 6.0
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 4/33 (12%)

Query  175  DNM-EECDRCYHCSIVYERRTMLLFCQPATEPG  206
            +NM E CD+C HC   Y      L C+    PG
Sbjct  647  ENMGEHCDQCQHCQFCY---LCPLVCETVCAPG  676


>gi|13878821|sp|Q92956|TNR14_HUMAN Gene info Tumor necrosis factor receptor superfamily member 14 precursor 
(Herpesvirus entry mediator A) (Tumor necrosis factor receptor-like 
2) (TR2)
Length=283

 Score = 26.6 bits (57),  Expect = 7.9
 Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 0/37 (0%)

Query  151  LQNEGTQDFNAFCKDLPNGSAFSADNMEECDRCYHCS  187
            +Q  GT+  +  C++ P G+      +EEC     CS
Sbjct  150  VQKGGTESQDTLCQNCPPGTFSPNGTLEECQHQTKCS  186


>gi|6094322|sp|Q07889|SOS1_HUMAN Gene info Son of sevenless homolog 1 (SOS-1)
Length=1333

 Score = 26.6 bits (57),  Expect = 7.9
 Identities = 28/92 (30%), Positives = 35/92 (38%), Gaps = 13/92 (14%)

Query  110  LHICLNQILGQSELPGVSEAKL-----FVMLRTQLKFDVGGSLDSLLQNEGTQDFNAFCK  164
            L IC     GQ  LPG S A+      F M + Q+        D    NE    F    K
Sbjct  467  LMICCKSNHGQPRLPGASNAEYRLKEKFFMRKVQIN-------DKDDTNEYKHAFEIILK  519

Query  165  DLPNGSAFSADNMEECDRCYHCSIVYERRTML  196
            D  N   FSA + EE +      I  + R+ L
Sbjct  520  D-ENSVIFSAKSAEEKNNWMAALISLQYRSTL  550


>gi|1717829|sp|Q06418|TYRO3_HUMAN Gene info Tyrosine-protein kinase receptor TYRO3 precursor (Tyrosine-protein 
kinase RSE) (Tyrosine-protein kinase SKY) (Tyrosine-protein 
kinase DTK) (Protein-tyrosine kinase byk)
Length=890

 Score = 26.6 bits (57),  Expect = 7.9
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 0/43 (0%)

Query  106  TLSCLHICLNQILGQSELPGVSEAKLFVMLRTQLKFDVGGSLD  148
            + +CL + L  ILGQ  +   S+  L++ +    +   GGSL+
Sbjct  778  SFTCLRMELENILGQLSVLSASQDPLYINIERAEEPTAGGSLE  820





  





  Database: Non-redundant SwissProt sequences
    Posted date:  Mar 15, 2006  2:23 AM
  Number of letters in database: 7,391,856
  Number of sequences in database:  13,628
Lambda     K      H
   0.323    0.139    0.429 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13628
Number of Hits to DB: 414730
Number of extensions: 17663
Number of successful extensions: 39
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 0
Length of query: 219
Length of database: 7391856
Length adjustment: 92
Effective length of query: 127
Effective length of database: 7391856
Effective search space: 938765712
Effective search space used: 779536160
T: 11
A: 40
X1: 16 (7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 57 (26.6 bits)