#query sequence for exonerate,termini, branch site sequence and position
NHE6	Intron 10-11	HOMO	GT-AG	ATGATCCTTAACC	-18

##orthologous introns found
name	intron start end	donor site	acceptor site	5'	3'	strand	
homonhe7	107929,110240	TTTTGTATCCTTTT	TGGAAACTGTTGGTCCCTTAACCTTCTACCTTGTGGTCAGGTTGC	"GT"	"AG"	-	


##donor and acceptor sites predictions in geneid, branch point sequence and position of it in the intron.

name	donor prediction	donor score	acceptor prediction	acceptor score	branch sequence	position of branch point (in intron)	
homonhe7	Donor:U2Intron	-5.12	Acceptor:U2Intron	 2.37	TGGTCCCTTAACC	-20		
homonhe7	Donor:U12gtagIntron	 9.27	Acceptor:U12gtagIntron	 8.65	TGGTCCCTTAACC	-20