#query sequence for exonerate,termini, branch site sequence and position
NHE6 Intron homologous to human 10-11	GALLUS	GT-AG	AGTTTCCTTAACA	-16

##orthologous introns found
name	intron start end	donor site	acceptor site	5'	3'	strand	
gallusnhe7	40968,44481	TTTTGTATCCTTTT	CCCCAGGAAGGTGAAATCCTTAACCCTCAGCTGTGAACAGATTGC	"GT"	"AG"	+	


##donor and acceptor sites predictions in geneid, branch point sequence and position of it in the intron.

name	donor prediction	donor score	acceptor prediction	acceptor score	branch sequence	position of branch point (in intron)	
gallusnhe7	Donor:U2Intron	-5.12	Acceptor:U2Intron	-1.20	GAAATCCTTAACC	-18		
gallusnhe7	Donor:U12gtagIntron	 9.27	Acceptor:U12gtagIntron	 9.57	GAAATCCTTAACC	-18