Command line: [exonerate -q dselG_U_prot.fasta -t D_sim_G.fasta -m protein2genome -W 3 --showtargetgff yes]
C4 Alignment display:
  Model: protein2genome
  Raw score: 301
  Aligned positions 6->97 of query
  Aligned positions 894->1226 of target

Query: dSelG
Target: gnl|Dsim-washu-w501-asm|Contig43.124

    7 : AsnGlyArgValTrpGluLysArgProTrpAspTrpArgArgIleValGluLeuPheValGl :   26
        :!!||||||:!!|||||||||||||||||||||! !!:!|||:!!:!!!!::!!||||||||
        AspGlyArgLeuTrpGluLysArgProTrpAspLeuLysArgValLeuAspIlePheValGl
  895 : GATGGTCGTCTGTGGGAGAAACGTCCTTGGGACTTGAAACGAGTTTTGGACATATTCGTGGG :  954

   27 : yIleTrpPheAlaIleLysGln{Le}  >>>> Target Intron 1 >>>>  {u}PheL :   36
        |||||||||||||:!!||||||{||}            59 bp            {|}||| 
        yIleTrpPheAlaValLysGln{Le}                             {u}PheA
  955 : TATATGGTTCGCCGTCAAACAG{TT}gt.........................ag{G}TTTG : 1043

   37 : euThrPheLeuAlaProPheThrGlyAsn<->AsnAsnGlnAlaAsnProArgArgGlyAsn :   55
         !:!!||||||:!!|||||||||||||||   !:!|||  !! !|||  !||||||||||||
        laSerPheLeuSerProPheThrGlyAsnAspSerAsnGlyAspAsnPheArgArgGlyAsn
 1044 : CATCGTTCCTGTCTCCATTCACTGGAAATGATAGCAACGGAGATAACTTCCGTCGAGGAAAT : 1103

   56 : GlyTrpGlyGlyGlyGlyGlyTrpGlyGlyGlyGlyGlyGlyGlyGlyGlyGlyGlyGlyGl :   76
        ||||||   |||.!!.!!.!!|||||||||||||||||||||||||||||||||||||||||
        GlyTrp---GlySerSerSerTrpGlyGlyGlyGlyGlyGlyGlyGlyGlyGlyGlyGlyGl
 1104 : GGATGG---GGAAGTAGCAGCTGGGGTGGAGGGGGCGGTGGTGGCGGCGGTGGCGGTGGTGG : 1163

   77 : yArgProGlySerGlySerGlyGlyLeuArgProAsnArgArgIleGlyArgIleGlnPro :   97
        | !!  !|||.!!|||.!!||||||  ! !!  !...  !|||  !||| !!:!!::!|||
        yGlyGlyGlyGlyGlyGlyGlyGlyGlyGlyGlyGlyTyrArgGlyGlyGlyLeuArgPro
 1164 : CGGAGGTGGTGGCGGTGGCGGTGGCGGCGGCGGTGGATATCGCGGAGGCGGATTAAGGCCT : 1226

vulgar: dSelG 6 97 . gnl|Dsim-washu-w501-asm|Contig43.124 894 1226 + 301 M 28 84 S 0 2 5 0 2 I 0 55 3 0 2 S 1 1 M 11 33 G 0 3 M 12 36 G 1 0 M 38 114

_______________________________________________________________________


C4 Alignment display:
  Model: protein2genome
  Raw score: 188
  Aligned positions 53->110 of query
  Aligned positions 2->181 of target

Query: dSelG
Target: gnl|Dsim-washu-w501-asm|Contig43.124

  54 : ArgGlyAsnGlyTrpGlyGlyGlyGlyGlyTrpGlyGlyGlyGlyGlyGly-----GlyGlyGl :  72
       ||||||!  ! ! !  !! !!||||||||||||||||||! !  !! ! !!#####! !|||||
       ArgGlyMetAspGlyArgCysGlyGlyGlyTrpGlyGlyValProGluArg#####ValGlyGl
   3 : CGCGGAATGGATGGCCGATGCGGGGGAGGATGGGGCGGCGTTCCTGAAAGATGAAGGTTGGCGG :  64

  73 : yGlyGlyGlyGlyArgProGly<->SerGlySerGlyGlyLeuArgProAsnArgArgIleGly :  92
       ||||||||||||||||||||||    !!  !..!||||||||||||||||||||||||||||||
       yGlyGlyGlyGlyArgProGly***ArgLeuGluGlyGlyLeuArgProAsnArgArgIleGly
  65 : CGGTGGAGGAGGAAGACCTGGATGACGTCTAGAGGGGGGACTAAGACCAAACCGCCGGATCGGC : 127

  93 : ArgIleGlnProThrMetSerCysAsnMetProAlaGlyGlyGly***Gly : 110
       |||||||||||||||||||||||||||||||||||||||||||||||||||
       ArgIleGlnProThrMetSerCysAsnMetProAlaGlyGlyGly***Gly
 128 : CGCATTCAGCCGACTATGAGCTGTAATATGCCCGCTGGAGGCGGATGAGGA : 181

vulgar: dSelG 53 110 . gnl|Dsim-washu-w501-asm|Contig43.124 2 181 + 188 M 17 51 F 0 5 M 10 30 G 0 3 M 30 90


______________________________________________________________________________________________


C4 Alignment display:
  Model: protein2genome
  Raw score: 177
  Aligned positions 55->102 of query
  Aligned positions 1127->1271 of target

Query: dSelG
Target: gnl|Dsim-washu-w501-asm|Contig43.124

   56 : AsnGlyTrpGlyGlyGlyGlyGlyTrpGlyGlyGlyGlyGlyGlyGlyGlyGlyGlyGlyGl :   75
        ..!||| !!||||||||||||||| ! |||||||||||||||||||||||||||||||||||
        GlyGlyGlyGlyGlyGlyGlyGlyGlyGlyGlyGlyGlyGlyGlyGlyGlyGlyGlyGlyGl
 1128 : GGTGGAGGGGGCGGTGGTGGCGGCGGTGGCGGTGGTGGCGGAGGTGGTGGCGGTGGCGGTGG : 1187

   76 : yGlyArgProGlySerGlySerGlyGlyLeuArgProAsnArgArgIleGlyArgIle<->G :   95
        |||| !!  !|||! ! !!.!!||||||||||||||||||!:!|||||||||||||||   !
        yGlyGlyGlyGlyTyrArgGlyGlyGlyLeuArgProAsnLysArgIleGlyArgIleProP
 1188 : CGGCGGCGGTGGATATCGCGGAGGCGGATTAAGGCCTAACAAACGAATTGGGCGCATTCCGC : 1250

   96 : lnProThrMetSerCysAsn :  102
          |||:!!...||||||!:!
        roProSerGlnSerCysSer
 1251 : CCCCCTCCCAATCCTGCAGT : 1271

vulgar: dSelG 55 102 . gnl|Dsim-washu-w501-asm|Contig43.124 1127 1271 + 177 M 40 120 G 0 3 M 7 21