CLUSTAL W (1.82) multiple sequence alignment


fastachunk_yak_reverscompl_dsp      TGTATATTGTATGTTTGGTTTACACCCAGTTAGCATATTTTTATTGCAGG 50
fastachunk_pse230_81646_510_ds      -ACAGATTGCA-GTTGGAAATGTAGTC-GCTGTCCCGAAGCCACTGCAGA 47
                                       * **** * *** *   *  *  * * *  *        * *****

fastachunk_yak_reverscompl_dsp      GAGCTAGCAAAAATG-GTTCTACTCCAGATGGCCAAAGCTACCTTGAGGC 99
fastachunk_pse230_81646_510_ds      TAGGATTGGACTATGCACTGCGGAATAGATCCGAAATACATTATTTTCTG 97
                                     **      *  ***   *       ****    **  *    **

fastachunk_yak_reverscompl_dsp      AGCGGAAAAAGACGAGATTAAAAAACTTCTTGCATAAATTGTATATGTCA 149
fastachunk_pse230_81646_510_ds      AGCTGTGTGAAATAAGCATATGTACCTTAGGGTGGGACTGGACCATGCAG 147
                                    *** *    * *  **  **   * ***   *    * * *   ***

fastachunk_yak_reverscompl_dsp      TTTTAGGATACAAACCTTATGTTTCAGTATCAAATACACTTTTAAATACA 199
fastachunk_pse230_81646_510_ds      TGTTCGCAGACATTGACTCGGTGCTCGAAGCAGA-ACTGATTGGTGACCA 196
                                    * ** * * ***     *  **    * * ** * **   **      **

fastachunk_yak_reverscompl_dsp      GTTGTGTATAGCTTTTAAAACGTCAACTATTTATATCGATGTTTTGGATA 249
fastachunk_pse230_81646_510_ds      ATCGTTTTGGGCATTTGCAGAG---ACCCATTCTGGCAGGTCAGCAGACT 243
                                     * ** *   ** ***  *  *   **   ** *  *         **

fastachunk_yak_reverscompl_dsp      AGCTGATACAAAAAATTCCATTTTTATATAAAAAAATATTGTGTATTTTA 299
fastachunk_pse230_81646_510_ds      TCTTGTTTCGGGGCGGCGCAGATATTTATTGCACT-TGGGGTTTATTGTG 292
                                       ** * *         **  * * ***   *   *   ** **** *

fastachunk_yak_reverscompl_dsp      TTATTTTGAATATGTAAAATTTTGTTCTGATTT-TACCCAAGTCAGCTGA 348
fastachunk_pse230_81646_510_ds      CCAGCACACTTGTGTAAAGTAAACCTAGGGGAGGCGCACACAATTATCGC 342
                                      *       * ****** *     *  *       * **        *

fastachunk_yak_reverscompl_dsp      GATCAGCTGATCTTTGCAAAACTGATATGGAT--GGAATCTCC---CTTC 393
fastachunk_pse230_81646_510_ds      ATTCTCCGCATTCAATTGATTTTAATTTCGATTCGTAGTTCCCTAGCCCC 392
                                      **  *  **       *   * ** * ***  * * *  **   *  *

fastachunk_yak_reverscompl_dsp      TGAAGTGCTAAGAATATCGATAAGTGTTCAAGTGTCAT-CACTAGCCCAA 442
fastachunk_pse230_81646_510_ds      TGAATTTTCGTTTTGACAATCACAGAATCAACAGCCACGTACTAGCTTTC 442
                                    **** *         *     *     ****  * **   ******

fastachunk_yak_reverscompl_dsp      AACACG-ATATTTTCTATTCAGCTGTTTCTAAAACCGGTGCTTAGAATTT 491
fastachunk_pse230_81646_510_ds      GATATGCGTGGCGAATGGCAAGAGCGCTCCAACCCTACCATTCCGTCATG 492
                                     * * *  *      *    **     ** **  *      *  *   *

fastachunk_yak_reverscompl_dsp      CGCGCACTATGTTTCAGCC 510
fastachunk_pse230_81646_510_ds      CAC-CAAGATGTTTCGGCC 510
                                    * * **  ******* ***


CLUSTAL W (1.82) Multiple Sequence Alignments



Sequence format is Pearson
Sequence 1: fastachunk_yak_reverscompl_dsp      510 bp
Sequence 2: fastachunk_pse230_81646_510_ds      510 bp
Start of Pairwise alignments
Aligning...
Sequences (1:2) Aligned. Score:  2
Guide tree        file created:   [/ebi/extserv/clustalw-work/interactive/clustalw-20050317-12091051.dnd]
Start of Multiple Alignment
There are 1 groups
Aligning...
Group 1:                     Delayed
Sequence:2     Score:4571
Alignment Score 864
CLUSTAL-Alignment file created  [/ebi/extserv/clustalw-work/interactive/clustalw-20050317-12091051.aln]