BLASTP 2.2.10 [Oct-19-2004]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

RID: 1111080438-26659-175056342260.BLASTQ4

Query= hg16_dna|GENSCAN_predicted_peptide_1|129_aa
         (129 letters)


Database: Non-redundant SwissProt sequences 
           164,271 sequences; 60,490,055 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs

Taxonomy reports

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|45477126|sp|Q86X10|KC19_HUMAN  Protein KIAA1219                 27   2.5   
gi|1174412|sp|P02549|SPCA_HUMAN  Spectrin alpha chain, eryth...    26   3.2   
gi|1708117|sp|P01914|HB2C_HUMAN  HLA class II histocompatibi...    26   4.2   
gi|34395493|sp|Q30167|2B1A_HUMAN  HLA class II histocompatib...    26   4.2   
gi|59797889|sp|Q9H2F5|EPC1_HUMAN  Enhancer of polycomb homol...    25   5.5   
gi|1708072|sp|P49915|GUAA_HUMAN  GMP synthase [glutamine-hyd...    25   5.5   
gi|122252|sp|P01911|HB2G_HUMAN  HLA class II histocompatibil...    25   7.2   
gi|20981706|sp|P17812|PYRG_HUMAN  CTP synthase (UTP--ammonia...    25   9.3   
gi|26006802|sp|Q8NCM2|KCNH5_HUMAN  Potassium voltage-gated c...    25   9.3   
gi|4033376|sp|Q14524|SCN5A_HUMAN  Sodium channel protein typ...    25   9.3   


Alignments

>gi|45477126|sp|Q86X10|KC19_HUMAN   Protein KIAA1219
          Length = 1494

 Score = 26.6 bits (57), Expect = 2.5
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 6   QWEDDVSTELQKITAAPMLTLVPIQADAMERGRAAASV 43
           QW  D+S  L  +     L  V +  D+ +R RA +SV
Sbjct: 773 QWRQDMSISLAALELLSGLAKVKVMVDSGDRKRAISSV 810



>gi|1174412|sp|P02549|SPCA_HUMAN   Spectrin alpha chain, erythrocyte (Erythroid alpha-spectrin)
          Length = 2418

 Score = 26.2 bits (56), Expect = 3.2
 Identities = 12/39 (30%), Positives = 22/39 (56%)

Query: 75   KKKEENVDHGLAASLGQQLYAVEKDHDFFIAQIAVPAAD 113
            +K EEN+   +      ++  ++KDH+ F+A +A   AD
Sbjct: 2059 EKMEENLSEPVHCVSLNEIRQLQKDHEDFLASLARAQAD 2097



>gi|1708117|sp|P01914|HB2C_HUMAN   HLA class II histocompatibility antigen, DR-1 beta chain precursor
           (Clone P2-beta-4)
          Length = 266

 Score = 25.8 bits (55), Expect = 4.2
 Identities = 15/40 (37%), Positives = 20/40 (50%)

Query: 30  QADAMERGRAAASVEDKHSGTKADRFRHQQRVTFKVVHCP 69
           Q D +ER RAA     +H+    + F  Q+RV  KV   P
Sbjct: 93  QKDLLERRRAAVDTYCRHNYGVGESFTVQRRVQPKVTVYP 132



>gi|34395493|sp|Q30167|2B1A_HUMAN   HLA class II histocompatibility antigen, DRB1-10 beta chain
           precursor (MHC class I antigen DRB1*10) (DRw10)
          Length = 266

 Score = 25.8 bits (55), Expect = 4.2
 Identities = 15/40 (37%), Positives = 20/40 (50%)

Query: 30  QADAMERGRAAASVEDKHSGTKADRFRHQQRVTFKVVHCP 69
           Q D +ER RAA     +H+    + F  Q+RV  KV   P
Sbjct: 93  QKDLLERRRAAVDTYCRHNYGVGESFTVQRRVQPKVTVYP 132



>gi|59797889|sp|Q9H2F5|EPC1_HUMAN   Enhancer of polycomb homolog 1
          Length = 836

 Score = 25.4 bits (54), Expect = 5.5
 Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 4/50 (8%)

Query: 74  IKKKEENVDHGLAASLGQQLYAVEKDHDFFIAQIAVPAADRILVFWKTSY 123
           ++K+EE+  H   A   QQ+Y  ++D+      I VP A+  + ++++ Y
Sbjct: 45  MEKEEESEHHLQRAISAQQVYGEKRDN----MVIPVPEAESNIAYYESIY 90



>gi|1708072|sp|P49915|GUAA_HUMAN   GMP synthase [glutamine-hydrolyzing] (Glutamine amidotransferase)
           (GMP synthetase)
          Length = 693

 Score = 25.4 bits (54), Expect = 5.5
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 53  DRFRHQQRVTFKVVHCPPGCRIKKKEENVDHGLAASLGQQLYAVEKDHDFFIAQIAVPAA 112
           +R  +Q++V    VH   G   K++ ++V+  L   LG Q+  +   H F+     +P +
Sbjct: 257 NRALNQEQVI--AVHIDNGFMRKRESQSVEEALK-KLGIQVKVINAAHSFYNGTTTLPIS 313

Query: 113 D 113
           D
Sbjct: 314 D 314



>gi|122252|sp|P01911|HB2G_HUMAN   HLA class II histocompatibility antigen, DW2.2/DR2.2 beta chain
          Length = 198

 Score = 25.0 bits (53), Expect = 7.2
 Identities = 14/40 (35%), Positives = 20/40 (50%)

Query: 30  QADAMERGRAAASVEDKHSGTKADRFRHQQRVTFKVVHCP 69
           Q D +E+ RAA     +H+    + F  Q+RV  KV   P
Sbjct: 64  QKDILEQARAAVDTYCRHNYGVVESFTVQRRVQPKVTVYP 103



>gi|20981706|sp|P17812|PYRG_HUMAN   CTP synthase (UTP--ammonia ligase) (CTP synthetase)
          Length = 591

 Score = 24.6 bits (52), Expect = 9.3
 Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 14/112 (12%)

Query: 4   LIQWEDDVSTELQKITAAPMLTLVP-----IQADAMERGRAAASVEDKHSGTK-----AD 53
           ++ W+D  STE    T+ P++  +P          M  G+     + K+S  +     AD
Sbjct: 413 VLGWQDANSTEFDPTTSHPVVVDMPEHNPGQMGGTMRLGKRRTLFQTKNSVMRKLYGDAD 472

Query: 54  RFRHQQRVTFKVVHCPPGCRIKKKEENVDHGLAASLGQQLYAVE-KDHDFFI 104
               + R  F+V      C  ++  + V   +    G+++  VE +DH FF+
Sbjct: 473 YLEERHRHRFEVNPVWKKCLEEQGLKFVGQDVE---GERMEIVELEDHPFFV 521



>gi|26006802|sp|Q8NCM2|KCNH5_HUMAN   Potassium voltage-gated channel subfamily H member 5 (Voltage-gated
           potassium channel subunit Kv10.2) (Ether-a-go-go
           potassium channel 2) (hEAG2)
          Length = 988

 Score = 24.6 bits (52), Expect = 9.3
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 4/60 (6%)

Query: 61  VTFKVVHCPPGCRIKKKEENVDHGLAASLGQQLYAVEKDHDFFIAQIAVPAADRILVFWK 120
           V F+ +HC PG  I    E+VD  L   +   L  ++ D    I        D   +FWK
Sbjct: 564 VEFQTIHCAPGDLIYHAGESVD-ALCFVVSGSLEVIQDDEVVAILGKGDVFGD---IFWK 619



>gi|4033376|sp|Q14524|SCN5A_HUMAN   Sodium channel protein type V alpha subunit (Voltage-gated sodium
           channel alpha subunit Nav1.5) (Sodium channel protein,
           cardiac muscle alpha-subunit) (HH1)
          Length = 2016

 Score = 24.6 bits (52), Expect = 9.3
 Identities = 10/17 (58%), Positives = 10/17 (58%)

Query: 68  CPPGCRIKKKEENVDHG 84
           CP G R  K  EN DHG
Sbjct: 335 CPEGYRCLKAGENPDHG 351






  Database: Non-redundant SwissProt sequences
    Posted date:  Mar 15, 2005 10:11 AM
  Number of letters in database: 60,490,055
  Number of sequences in database:  164,271
  
Lambda     K      H
   0.320    0.133    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 584,529
Number of Sequences: 164271
Number of extensions: 21632
Number of successful extensions: 46
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43
Number of HSP's gapped (non-prelim): 3
length of query: 129
length of database: 6,424,444
effective HSP length: 84
effective length of query: 45
effective length of database: 5,424,424
effective search space: 244099080
effective search space used: 244099080
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)







 


 
Format
  


 


 
Show
  Graphical OverviewLinkoutSequence RetrievalNCBI-giAlignmentPSSMBioseq in HTMLPlain textASN.1XMLformat


 


 
Use new formatter
  Masking CharacterDefault(X for protein, n for nucleotide)Lower Case
Masking ColorBlackGreyRed



 


 
Number of:
  Descriptions01050100250500
Alignments01050100250500



 


 
Alignment view
  PairwisePairwise with identitiesquery-anchored with identitiesquery-anchored without identitiesflat query-anchored with identitiesflat query-anchored without identitiesHit Table


 


 
Format for PSI-BLAST
  with inclusion threshold:


 


 
Limit results by entrez query
   or select from:All organismsViruses [ORGN]Archaea [ORGN]Bacteria [ORGN]Eukaryota [ORGN]Viridiplantae [ORGN]Fungi [ORGN]Metazoa [ORGN]Arthropoda [ORGN]Vertebrata [ORGN]Mammalia [ORGN]Rodentia [ORGN]Primates [ORGN]-------------------Aeropyrum pernix [ORGN]Aquifex aeolicus [ORGN]Arabidopsis thaliana [ORGN]Bacillus subtilis [ORGN]Bos taurus [ORGN]Caenorhabditis elegans [ORGN]Canis familiaris[ORGN]Danio rerio [ORGN]Dictyostelium discoideum [ORGN]Drosophila melanogaster [ORGN]Escherichia coli [ORGN]Gallus gallus [ORGN]Homo sapiens [ORGN]Human immunodeficiency virus type 1 [ORGN]Methanococcus jannaschii [ORGN]Mus musculus [ORGN]Oryctolagus cuniculus [ORGN]Oryza sativa [ORGN]Ovis aries [ORGN]Plasmodium falciparum [ORGN]Rattus norvegicus [ORGN]Saccharomyces cerevisiae [ORGN]Schizosaccharomyces pombe [ORGN]Xenopus tropicalis[ORGN]Simian immunodeficiency virus [ORGN]Sus scrofa[ORGN]Synechocystis PCC6803 [ORGN]Takifugu rubripes [ORGN]Xenopus laevis [ORGN]Zea mays [ORGN]


 


 
Expect value range:
    







 or